Scutellaria seleriana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420962.1 · 3–76 bp · −
psbA · MW420962.1 · 376–1,434 bp · −
trnK-UUU · MW420962.1 · 1,679–4,268 bp · −
matK · MW420962.1 · 1,970–3,514 bp · −
rps16 · MW420962.1 · 5,180–6,307 bp · −
trnQ-UUC · MW420962.1 · 7,430–7,501 bp · −
trnS-GCU · MW420962.1 · 8,621–8,708 bp · −
atpA · MW420962.1 · 10,497–12,020 bp · −
atpF · MW420962.1 · 12,102–13,332 bp · −
atpH · MW420962.1 · 13,693–13,938 bp · −
atpI · MW420962.1 · 14,928–15,671 bp · −
rps2 · MW420962.1 · 16,014–16,724 bp · −
rpoC2 · MW420962.1 · 16,941–21,146 bp · −
rpoC1 · MW420962.1 · 21,292–24,121 bp · −
rpoB · MW420962.1 · 24,148–27,360 bp · −
psbM · MW420962.1 · 30,405–30,518 bp · −
trnD-GUC · MW420962.1 · 31,045–31,118 bp · −
trnY-GUA · MW420962.1 · 31,232–31,315 bp · −
trnE-UUC · MW420962.1 · 31,375–31,447 bp · −
trnS-UCA · MW420962.1 · 36,073–36,165 bp · −
trnfM-CAU · MW420962.1 · 37,136–37,209 bp · −
rps14 · MW420962.1 · 37,359–37,661 bp · −
psaB · MW420962.1 · 37,789–39,993 bp · −
psaA · MW420962.1 · 40,019–42,271 bp · −
ycf3 · MW420962.1 · 42,970–44,888 bp · −
rps4 · MW420962.1 · 46,141–46,746 bp · −
trnT-UGU · MW420962.1 · 47,079–47,151 bp · −
ndhJ · MW420962.1 · 49,423–49,899 bp · −
ndhK · MW420962.1 · 50,007–50,684 bp · −
ndhC · MW420962.1 · 50,738–51,100 bp · −
trnV-UAC · MW420962.1 · 51,546–52,199 bp · −
atpE · MW420962.1 · 52,661–53,062 bp · −
atpB · MW420962.1 · 53,059–54,555 bp · −
psbJ · MW420962.1 · 64,334–64,456 bp · −
psbL · MW420962.1 · 64,590–64,706 bp · −
psbF · MW420962.1 · 64,730–64,849 bp · −
psbE · MW420962.1 · 64,864–65,115 bp · −
trnW-CCA · MW420962.1 · 66,515–66,588 bp · −
trnP-UGG · MW420962.1 · 66,758–66,831 bp · −
rpl20 · MW420962.1 · 68,635–69,021 bp · −
rps12 · MW420962.1 · 69,806–69,931 bp · −
rps12 · MW420962.1 · 97,128–97,918 bp · −
clpP · MW420962.1 · 70,073–72,015 bp · −
psbN · MW420962.1 · 74,364–74,495 bp · −
rpoA · MW420962.1 · 77,871–78,878 bp · −
rps11 · MW420962.1 · 78,950–79,366 bp · −
rpl36 · MW420962.1 · 79,467–79,580 bp · −
infA · MW420962.1 · 79,676–79,909 bp · −
rps8 · MW420962.1 · 80,025–80,435 bp · −
rpl14 · MW420962.1 · 80,603–80,971 bp · −
rpl16 · MW420962.1 · 81,083–82,327 bp · −
rps3 · MW420962.1 · 82,482–83,144 bp · −
rpl22 · MW420962.1 · 83,146–83,601 bp · −
rps19 · MW420962.1 · 83,661–83,939 bp · −
rpl2 · MW420962.1 · 83,994–85,476 bp · −
rpl23 · MW420962.1 · 85,495–85,776 bp · −
trnI-CAU · MW420962.1 · 85,936–86,009 bp · −
trnL-CAA · MW420962.1 · 93,507–93,587 bp · −
ndhB · MW420962.1 · 94,121–96,332 bp · −
rps7 · MW420962.1 · 96,607–97,074 bp · −
ndhF · MW420962.1 · 109,107–111,338 bp · −
ndhD · MW420962.1 · 113,845–115,155 bp · −
psaC · MW420962.1 · 115,474–115,719 bp · −
ndhE · MW420962.1 · 115,958–116,263 bp · −
ndhG · MW420962.1 · 116,485–117,015 bp · −
ndhI · MW420962.1 · 117,378–117,878 bp · −
ndhA · MW420962.1 · 117,959–120,058 bp · −
ndhH · MW420962.1 · 120,060–121,241 bp · −
rps15 · MW420962.1 · 121,330–121,602 bp · −
ycf1 · MW420962.1 · 121,890–127,283 bp · −
trnR-ACC · MW420962.1 · 128,241–128,314 bp · −
rrn5 · MW420962.1 · 128,549–128,669 bp · −
rrn4.5 · MW420962.1 · 128,917–129,019 bp · −
rrn23 · MW420962.1 · 129,118–131,930 bp · −
trnA-UGC · MW420962.1 · 132,100–132,982 bp · −
trnI-GAU · MW420962.1 · 133,048–134,066 bp · −
rrn16 · MW420962.1 · 134,365–135,855 bp · −
trnV-GAC · MW420962.1 · 136,083–136,154 bp · −
ycf15 · MW420962.1 · 142,397–142,594 bp · −
ycf2 · MW420962.1 · 142,736–149,545 bp · −
psbK · MW420962.1 · 7,820–8,005 bp · +
psbI · MW420962.1 · 8,400–8,510 bp · +
trnG-UCC · MW420962.1 · 9,402–10,148 bp · +
trnR-UCU · MW420962.1 · 10,329–10,400 bp · +
trnC-GCA · MW420962.1 · 28,520–28,590 bp · +
petN · MW420962.1 · 29,302–29,391 bp · +
trnT-GGU · MW420962.1 · 32,011–32,082 bp · +
psbD · MW420962.1 · 33,399–34,460 bp · +
psbC · MW420962.1 · 34,408–35,829 bp · +
psbZ · MW420962.1 · 36,485–36,673 bp · +
trnG-GCC · MW420962.1 · 36,922–36,992 bp · +
trnS-GGA · MW420962.1 · 45,771–45,857 bp · +
trnL-UAA · MW420962.1 · 47,831–48,398 bp · +
trnF-GAA · MW420962.1 · 48,703–48,775 bp · +
trnM-CAU · MW420962.1 · 52,380–52,452 bp · +
rbcL · MW420962.1 · 55,353–56,792 bp · +
accD · MW420962.1 · 57,516–58,994 bp · +
psaI · MW420962.1 · 59,706–59,816 bp · +
ycf4 · MW420962.1 · 60,250–60,804 bp · +
cemA · MW420962.1 · 61,485–62,144 bp · +
petA · MW420962.1 · 62,352–63,314 bp · +
petL · MW420962.1 · 66,012–66,107 bp · +
petG · MW420962.1 · 66,283–66,396 bp · +
psaJ · MW420962.1 · 67,105–67,230 bp · +
rpl33 · MW420962.1 · 67,718–67,918 bp · +
rps18 · MW420962.1 · 68,093–68,398 bp · +
rps12 · MW420962.1 · 137,725–138,515 bp · +
psbB · MW420962.1 · 72,478–74,004 bp · +
psbT · MW420962.1 · 74,196–74,303 bp · +
psbH · MW420962.1 · 74,599–74,820 bp · +
petB · MW420962.1 · 74,946–76,315 bp · +
petD · MW420962.1 · 76,504–77,708 bp · +
ycf2 · MW420962.1 · 86,098–92,907 bp · +
ycf15 · MW420962.1 · 93,049–93,246 bp · +
trnV-GAC · MW420962.1 · 99,489–99,560 bp · +
rrn16 · MW420962.1 · 99,788–101,278 bp · +
trnI-GAU · MW420962.1 · 101,577–102,595 bp · +
trnA-UGC · MW420962.1 · 102,661–103,543 bp · +
rrn23 · MW420962.1 · 103,713–106,525 bp · +
rrn4.5 · MW420962.1 · 106,624–106,726 bp · +
rrn5 · MW420962.1 · 106,974–107,094 bp · +
trnR-ACC · MW420962.1 · 107,329–107,402 bp · +
trnN-GUU · MW420962.1 · 107,959–108,030 bp · +
rpl32 · MW420962.1 · 111,841–112,017 bp · +
trnL-UAG · MW420962.1 · 112,453–112,532 bp · +
ccsA · MW420962.1 · 112,638–113,612 bp · +
trnN-GUU · MW420962.1 · 127,613–127,684 bp · +
rps7 · MW420962.1 · 138,569–139,036 bp · +
ndhB · MW420962.1 · 139,311–141,522 bp · +
trnL-CAA · MW420962.1 · 142,056–142,136 bp · +
trnI-CAU · MW420962.1 · 149,634–149,707 bp · +
rpl23 · MW420962.1 · 149,867–150,148 bp · +
rpl2 · MW420962.1 · 150,167–151,649 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria seleriana
ANNOTATED PLASTOME
MW420962.1
151,744 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37936 75872 113808 151744 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 376 1434 1059 Locate
trnK-UUU gene − 1679 4268 2590 Locate
matK gene − 1970 3514 1545 Locate
rps16 gene − 5180 6307 1128 Locate
trnQ-UUC gene − 7430 7501 72 Locate
psbK gene + 7820 8005 186 Locate
psbI gene + 8400 8510 111 Locate
trnS-GCU gene − 8621 8708 88 Locate
trnG-UCC gene + 9402 10148 747 Locate
trnR-UCU gene + 10329 10400 72 Locate
atpA gene − 10497 12020 1524 Locate
atpF gene − 12102 13332 1231 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14928 15671 744 Locate
rps2 gene − 16014 16724 711 Locate
rpoC2 gene − 16941 21146 4206 Locate
rpoC1 gene − 21292 24121 2830 Locate
rpoB gene − 24148 27360 3213 Locate
trnC-GCA gene + 28520 28590 71 Locate
petN gene + 29302 29391 90 Locate
psbM gene − 30405 30518 114 Locate
trnD-GUC gene − 31045 31118 74 Locate
trnY-GUA gene − 31232 31315 84 Locate
trnE-UUC gene − 31375 31447 73 Locate
trnT-GGU gene + 32011 32082 72 Locate
psbD gene + 33399 34460 1062 Locate
psbC gene + 34408 35829 1422 Locate
trnS-UCA gene − 36073 36165 93 Locate
psbZ gene + 36485 36673 189 Locate
trnG-GCC gene + 36922 36992 71 Locate
trnfM-CAU gene − 37136 37209 74 Locate
rps14 gene − 37359 37661 303 Locate
psaB gene − 37789 39993 2205 Locate
psaA gene − 40019 42271 2253 Locate
ycf3 gene − 42970 44888 1919 Locate
trnS-GGA gene + 45771 45857 87 Locate
rps4 gene − 46141 46746 606 Locate
trnT-UGU gene − 47079 47151 73 Locate
trnL-UAA gene + 47831 48398 568 Locate
trnF-GAA gene + 48703 48775 73 Locate
ndhJ gene − 49423 49899 477 Locate
ndhK gene − 50007 50684 678 Locate
ndhC gene − 50738 51100 363 Locate
trnV-UAC gene − 51546 52199 654 Locate
trnM-CAU gene + 52380 52452 73 Locate
atpE gene − 52661 53062 402 Locate
atpB gene − 53059 54555 1497 Locate
rbcL gene + 55353 56792 1440 Locate
accD gene + 57516 58994 1479 Locate
psaI gene + 59706 59816 111 Locate
ycf4 gene + 60250 60804 555 Locate
cemA gene + 61485 62144 660 Locate
petA gene + 62352 63314 963 Locate
psbJ gene − 64334 64456 123 Locate
psbL gene − 64590 64706 117 Locate
psbF gene − 64730 64849 120 Locate
psbE gene − 64864 65115 252 Locate
petL gene + 66012 66107 96 Locate
petG gene + 66283 66396 114 Locate
trnW-CCA gene − 66515 66588 74 Locate
trnP-UGG gene − 66758 66831 74 Locate
psaJ gene + 67105 67230 126 Locate
rpl33 gene + 67718 67918 201 Locate
rps18 gene + 68093 68398 306 Locate
rpl20 gene − 68635 69021 387 Locate
rps12 gene − 69806 69931 126 Locate
clpP gene − 70073 72015 1943 Locate
psbB gene + 72478 74004 1527 Locate
psbT gene + 74196 74303 108 Locate
psbN gene − 74364 74495 132 Locate
psbH gene + 74599 74820 222 Locate
petB gene + 74946 76315 1370 Locate
petD gene + 76504 77708 1205 Locate
rpoA gene − 77871 78878 1008 Locate
rps11 gene − 78950 79366 417 Locate
rpl36 gene − 79467 79580 114 Locate
infA gene − 79676 79909 234 Locate
rps8 gene − 80025 80435 411 Locate
rpl14 gene − 80603 80971 369 Locate
rpl16 gene − 81083 82327 1245 Locate
rps3 gene − 82482 83144 663 Locate
rpl22 gene − 83146 83601 456 Locate
rps19 gene − 83661 83939 279 Locate
rpl2 gene − 83994 85476 1483 Locate
rpl23 gene − 85495 85776 282 Locate
trnI-CAU gene − 85936 86009 74 Locate
ycf2 gene + 86098 92907 6810 Locate
ycf15 gene + 93049 93246 198 Locate
trnL-CAA gene − 93507 93587 81 Locate
ndhB gene − 94121 96332 2212 Locate
rps7 gene − 96607 97074 468 Locate
rps12 gene − 97128 97918 791 Locate
trnV-GAC gene + 99489 99560 72 Locate
rrn16 gene + 99788 101278 1491 Locate
trnI-GAU gene + 101577 102595 1019 Locate
trnA-UGC gene + 102661 103543 883 Locate
rrn23 gene + 103713 106525 2813 Locate
rrn4.5 gene + 106624 106726 103 Locate
rrn5 gene + 106974 107094 121 Locate
trnR-ACC gene + 107329 107402 74 Locate
trnN-GUU gene + 107959 108030 72 Locate
ndhF gene − 109107 111338 2232 Locate
rpl32 gene + 111841 112017 177 Locate
trnL-UAG gene + 112453 112532 80 Locate
ccsA gene + 112638 113612 975 Locate
ndhD gene − 113845 115155 1311 Locate
psaC gene − 115474 115719 246 Locate
ndhE gene − 115958 116263 306 Locate
ndhG gene − 116485 117015 531 Locate
ndhI gene − 117378 117878 501 Locate
ndhA gene − 117959 120058 2100 Locate
ndhH gene − 120060 121241 1182 Locate
rps15 gene − 121330 121602 273 Locate
ycf1 gene − 121890 127283 5394 Locate
trnN-GUU gene + 127613 127684 72 Locate
trnR-ACC gene − 128241 128314 74 Locate
rrn5 gene − 128549 128669 121 Locate
rrn4.5 gene − 128917 129019 103 Locate
rrn23 gene − 129118 131930 2813 Locate
trnA-UGC gene − 132100 132982 883 Locate
trnI-GAU gene − 133048 134066 1019 Locate
rrn16 gene − 134365 135855 1491 Locate
trnV-GAC gene − 136083 136154 72 Locate
rps12 gene + 137725 138515 791 Locate
rps7 gene + 138569 139036 468 Locate
ndhB gene + 139311 141522 2212 Locate
trnL-CAA gene + 142056 142136 81 Locate
ycf15 gene − 142397 142594 198 Locate
ycf2 gene − 142736 149545 6810 Locate
trnI-CAU gene + 149634 149707 74 Locate
rpl23 gene + 149867 150148 282 Locate
rpl2 gene + 150167 151649 1483 Locate
Status Available
Accession MW420962.1
Length 151,744 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources