Scutellaria splendens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420963.1 · 3–76 bp · −
psbA · MW420963.1 · 399–1,457 bp · −
trnK-UUU · MW420963.1 · 1,702–4,290 bp · −
matK · MW420963.1 · 1,993–3,537 bp · −
rps16 · MW420963.1 · 5,210–6,331 bp · −
trnQ-UUC · MW420963.1 · 7,465–7,536 bp · −
trnS-GCU · MW420963.1 · 8,671–8,758 bp · −
atpA · MW420963.1 · 10,534–12,057 bp · −
atpF · MW420963.1 · 12,141–13,371 bp · −
atpH · MW420963.1 · 13,734–13,979 bp · −
atpI · MW420963.1 · 14,964–15,707 bp · −
rps2 · MW420963.1 · 16,049–16,759 bp · −
rpoC2 · MW420963.1 · 16,976–21,181 bp · −
rpoC1 · MW420963.1 · 21,327–24,162 bp · −
rpoB · MW420963.1 · 24,189–27,401 bp · −
psbM · MW420963.1 · 30,446–30,559 bp · −
trnD-GUC · MW420963.1 · 31,086–31,159 bp · −
trnY-GUA · MW420963.1 · 31,273–31,356 bp · −
trnE-UUC · MW420963.1 · 31,416–31,488 bp · −
trnS-UCA · MW420963.1 · 36,109–36,201 bp · −
trnfM-CAU · MW420963.1 · 37,195–37,268 bp · −
rps14 · MW420963.1 · 37,418–37,720 bp · −
psaB · MW420963.1 · 37,851–40,055 bp · −
psaA · MW420963.1 · 40,081–42,333 bp · −
ycf3 · MW420963.1 · 43,031–44,954 bp · −
rps4 · MW420963.1 · 46,216–46,821 bp · −
trnT-UGU · MW420963.1 · 47,156–47,228 bp · −
ndhJ · MW420963.1 · 49,503–49,979 bp · −
ndhK · MW420963.1 · 50,087–50,764 bp · −
ndhC · MW420963.1 · 50,818–51,180 bp · −
trnV-UAC · MW420963.1 · 51,637–52,290 bp · −
atpE · MW420963.1 · 52,752–53,153 bp · −
atpB · MW420963.1 · 53,150–54,646 bp · −
psbJ · MW420963.1 · 64,403–64,525 bp · −
psbL · MW420963.1 · 64,659–64,775 bp · −
psbF · MW420963.1 · 64,799–64,918 bp · −
psbE · MW420963.1 · 64,933–65,184 bp · −
trnW-CCA · MW420963.1 · 66,595–66,668 bp · −
trnP-UGG · MW420963.1 · 66,838–66,911 bp · −
rpl20 · MW420963.1 · 68,704–69,090 bp · −
rps12 · MW420963.1 · 69,865–69,990 bp · −
rps12 · MW420963.1 · 97,207–97,997 bp · −
clpP · MW420963.1 · 70,132–72,073 bp · −
psbN · MW420963.1 · 74,421–74,552 bp · −
rpoA · MW420963.1 · 78,128–78,949 bp · −
rps11 · MW420963.1 · 79,021–79,437 bp · −
rpl36 · MW420963.1 · 79,538–79,651 bp · −
infA · MW420963.1 · 79,747–79,980 bp · −
rps8 · MW420963.1 · 80,097–80,507 bp · −
rpl14 · MW420963.1 · 80,667–81,035 bp · −
rpl16 · MW420963.1 · 81,147–82,405 bp · −
rps3 · MW420963.1 · 82,560–83,222 bp · −
rpl22 · MW420963.1 · 83,249–83,680 bp · −
rps19 · MW420963.1 · 83,740–84,018 bp · −
rpl2 · MW420963.1 · 84,073–85,555 bp · −
rpl23 · MW420963.1 · 85,574–85,855 bp · −
trnI-CAU · MW420963.1 · 86,015–86,088 bp · −
trnL-CAA · MW420963.1 · 93,586–93,666 bp · −
ndhB · MW420963.1 · 94,200–96,411 bp · −
rps7 · MW420963.1 · 96,686–97,153 bp · −
ndhF · MW420963.1 · 109,182–111,413 bp · −
ndhD · MW420963.1 · 113,929–115,458 bp · −
psaC · MW420963.1 · 115,558–115,803 bp · −
ndhE · MW420963.1 · 116,042–116,347 bp · −
ndhG · MW420963.1 · 116,569–117,099 bp · −
ndhI · MW420963.1 · 117,462–117,962 bp · −
ndhA · MW420963.1 · 118,043–120,148 bp · −
ndhH · MW420963.1 · 120,150–121,331 bp · −
rps15 · MW420963.1 · 121,420–121,692 bp · −
ycf1 · MW420963.1 · 121,981–127,404 bp · −
trnR-ACC · MW420963.1 · 128,353–128,426 bp · −
rrn5 · MW420963.1 · 128,661–128,781 bp · −
rrn4.5 · MW420963.1 · 129,029–129,131 bp · −
rrn23 · MW420963.1 · 129,230–132,042 bp · −
trnA-UGC · MW420963.1 · 132,212–133,099 bp · −
trnI-GAU · MW420963.1 · 133,165–134,183 bp · −
rrn16 · MW420963.1 · 134,482–135,972 bp · −
trnV-GAC · MW420963.1 · 136,200–136,271 bp · −
ycf15 · MW420963.1 · 142,514–142,711 bp · −
ycf2 · MW420963.1 · 142,853–149,662 bp · −
psbK · MW420963.1 · 7,861–8,046 bp · +
psbI · MW420963.1 · 8,441–8,551 bp · +
trnG-UCC · MW420963.1 · 9,443–10,191 bp · +
trnR-UCU · MW420963.1 · 10,366–10,437 bp · +
trnC-GCA · MW420963.1 · 28,560–28,630 bp · +
petN · MW420963.1 · 29,343–29,432 bp · +
trnT-GGU · MW420963.1 · 32,052–32,123 bp · +
psbD · MW420963.1 · 33,434–34,495 bp · +
psbC · MW420963.1 · 34,443–35,864 bp · +
psbZ · MW420963.1 · 36,521–36,709 bp · +
trnG-GCC · MW420963.1 · 36,981–37,051 bp · +
trnS-GGA · MW420963.1 · 45,845–45,931 bp · +
trnL-UAA · MW420963.1 · 47,909–48,478 bp · +
trnF-GAA · MW420963.1 · 48,783–48,855 bp · +
trnM-CAU · MW420963.1 · 52,471–52,543 bp · +
rbcL · MW420963.1 · 55,414–56,853 bp · +
accD · MW420963.1 · 57,570–59,048 bp · +
psaI · MW420963.1 · 59,759–59,869 bp · +
ycf4 · MW420963.1 · 60,311–60,865 bp · +
cemA · MW420963.1 · 61,546–62,205 bp · +
petA · MW420963.1 · 62,412–63,374 bp · +
petL · MW420963.1 · 66,092–66,187 bp · +
petG · MW420963.1 · 66,363–66,476 bp · +
psaJ · MW420963.1 · 67,185–67,319 bp · +
rpl33 · MW420963.1 · 67,807–68,007 bp · +
rps18 · MW420963.1 · 68,162–68,467 bp · +
rps12 · MW420963.1 · 137,842–138,632 bp · +
psbB · MW420963.1 · 72,535–74,061 bp · +
psbT · MW420963.1 · 74,253–74,360 bp · +
psbH · MW420963.1 · 74,656–74,877 bp · +
petB · MW420963.1 · 75,003–76,370 bp · +
petD · MW420963.1 · 76,559–77,775 bp · +
ycf2 · MW420963.1 · 86,177–92,986 bp · +
ycf15 · MW420963.1 · 93,128–93,325 bp · +
trnV-GAC · MW420963.1 · 99,568–99,639 bp · +
rrn16 · MW420963.1 · 99,867–101,357 bp · +
trnI-GAU · MW420963.1 · 101,656–102,674 bp · +
trnA-UGC · MW420963.1 · 102,740–103,627 bp · +
rrn23 · MW420963.1 · 103,797–106,609 bp · +
rrn4.5 · MW420963.1 · 106,708–106,810 bp · +
rrn5 · MW420963.1 · 107,058–107,178 bp · +
trnR-ACC · MW420963.1 · 107,413–107,486 bp · +
trnN-GUU · MW420963.1 · 108,043–108,114 bp · +
rpl32 · MW420963.1 · 111,931–112,107 bp · +
trnL-UAG · MW420963.1 · 112,542–112,621 bp · +
ccsA · MW420963.1 · 112,721–113,695 bp · +
trnN-GUU · MW420963.1 · 127,725–127,796 bp · +
rps7 · MW420963.1 · 138,686–139,153 bp · +
ndhB · MW420963.1 · 139,428–141,639 bp · +
trnL-CAA · MW420963.1 · 142,173–142,253 bp · +
trnI-CAU · MW420963.1 · 149,751–149,824 bp · +
rpl23 · MW420963.1 · 149,984–150,265 bp · +
rpl2 · MW420963.1 · 150,284–151,766 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria splendens
ANNOTATED PLASTOME
MW420963.1
151,861 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37965 75930 113896 151861 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACC trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 399 1457 1059 Locate
trnK-UUU gene − 1702 4290 2589 Locate
matK gene − 1993 3537 1545 Locate
rps16 gene − 5210 6331 1122 Locate
trnQ-UUC gene − 7465 7536 72 Locate
psbK gene + 7861 8046 186 Locate
psbI gene + 8441 8551 111 Locate
trnS-GCU gene − 8671 8758 88 Locate
trnG-UCC gene + 9443 10191 749 Locate
trnR-UCU gene + 10366 10437 72 Locate
atpA gene − 10534 12057 1524 Locate
atpF gene − 12141 13371 1231 Locate
atpH gene − 13734 13979 246 Locate
atpI gene − 14964 15707 744 Locate
rps2 gene − 16049 16759 711 Locate
rpoC2 gene − 16976 21181 4206 Locate
rpoC1 gene − 21327 24162 2836 Locate
rpoB gene − 24189 27401 3213 Locate
trnC-GCA gene + 28560 28630 71 Locate
petN gene + 29343 29432 90 Locate
psbM gene − 30446 30559 114 Locate
trnD-GUC gene − 31086 31159 74 Locate
trnY-GUA gene − 31273 31356 84 Locate
trnE-UUC gene − 31416 31488 73 Locate
trnT-GGU gene + 32052 32123 72 Locate
psbD gene + 33434 34495 1062 Locate
psbC gene + 34443 35864 1422 Locate
trnS-UCA gene − 36109 36201 93 Locate
psbZ gene + 36521 36709 189 Locate
trnG-GCC gene + 36981 37051 71 Locate
trnfM-CAU gene − 37195 37268 74 Locate
rps14 gene − 37418 37720 303 Locate
psaB gene − 37851 40055 2205 Locate
psaA gene − 40081 42333 2253 Locate
ycf3 gene − 43031 44954 1924 Locate
trnS-GGA gene + 45845 45931 87 Locate
rps4 gene − 46216 46821 606 Locate
trnT-UGU gene − 47156 47228 73 Locate
trnL-UAA gene + 47909 48478 570 Locate
trnF-GAA gene + 48783 48855 73 Locate
ndhJ gene − 49503 49979 477 Locate
ndhK gene − 50087 50764 678 Locate
ndhC gene − 50818 51180 363 Locate
trnV-UAC gene − 51637 52290 654 Locate
trnM-CAU gene + 52471 52543 73 Locate
atpE gene − 52752 53153 402 Locate
atpB gene − 53150 54646 1497 Locate
rbcL gene + 55414 56853 1440 Locate
accD gene + 57570 59048 1479 Locate
psaI gene + 59759 59869 111 Locate
ycf4 gene + 60311 60865 555 Locate
cemA gene + 61546 62205 660 Locate
petA gene + 62412 63374 963 Locate
psbJ gene − 64403 64525 123 Locate
psbL gene − 64659 64775 117 Locate
psbF gene − 64799 64918 120 Locate
psbE gene − 64933 65184 252 Locate
petL gene + 66092 66187 96 Locate
petG gene + 66363 66476 114 Locate
trnW-CCA gene − 66595 66668 74 Locate
trnP-UGG gene − 66838 66911 74 Locate
psaJ gene + 67185 67319 135 Locate
rpl33 gene + 67807 68007 201 Locate
rps18 gene + 68162 68467 306 Locate
rpl20 gene − 68704 69090 387 Locate
rps12 gene − 69865 69990 126 Locate
clpP gene − 70132 72073 1942 Locate
psbB gene + 72535 74061 1527 Locate
psbT gene + 74253 74360 108 Locate
psbN gene − 74421 74552 132 Locate
psbH gene + 74656 74877 222 Locate
petB gene + 75003 76370 1368 Locate
petD gene + 76559 77775 1217 Locate
rpoA gene − 78128 78949 822 Locate
rps11 gene − 79021 79437 417 Locate
rpl36 gene − 79538 79651 114 Locate
infA gene − 79747 79980 234 Locate
rps8 gene − 80097 80507 411 Locate
rpl14 gene − 80667 81035 369 Locate
rpl16 gene − 81147 82405 1259 Locate
rps3 gene − 82560 83222 663 Locate
rpl22 gene − 83249 83680 432 Locate
rps19 gene − 83740 84018 279 Locate
rpl2 gene − 84073 85555 1483 Locate
rpl23 gene − 85574 85855 282 Locate
trnI-CAU gene − 86015 86088 74 Locate
ycf2 gene + 86177 92986 6810 Locate
ycf15 gene + 93128 93325 198 Locate
trnL-CAA gene − 93586 93666 81 Locate
ndhB gene − 94200 96411 2212 Locate
rps7 gene − 96686 97153 468 Locate
rps12 gene − 97207 97997 791 Locate
trnV-GAC gene + 99568 99639 72 Locate
rrn16 gene + 99867 101357 1491 Locate
trnI-GAU gene + 101656 102674 1019 Locate
trnA-UGC gene + 102740 103627 888 Locate
rrn23 gene + 103797 106609 2813 Locate
rrn4.5 gene + 106708 106810 103 Locate
rrn5 gene + 107058 107178 121 Locate
trnR-ACC gene + 107413 107486 74 Locate
trnN-GUU gene + 108043 108114 72 Locate
ndhF gene − 109182 111413 2232 Locate
rpl32 gene + 111931 112107 177 Locate
trnL-UAG gene + 112542 112621 80 Locate
ccsA gene + 112721 113695 975 Locate
ndhD gene − 113929 115458 1530 Locate
psaC gene − 115558 115803 246 Locate
ndhE gene − 116042 116347 306 Locate
ndhG gene − 116569 117099 531 Locate
ndhI gene − 117462 117962 501 Locate
ndhA gene − 118043 120148 2106 Locate
ndhH gene − 120150 121331 1182 Locate
rps15 gene − 121420 121692 273 Locate
ycf1 gene − 121981 127404 5424 Locate
trnN-GUU gene + 127725 127796 72 Locate
trnR-ACC gene − 128353 128426 74 Locate
rrn5 gene − 128661 128781 121 Locate
rrn4.5 gene − 129029 129131 103 Locate
rrn23 gene − 129230 132042 2813 Locate
trnA-UGC gene − 132212 133099 888 Locate
trnI-GAU gene − 133165 134183 1019 Locate
rrn16 gene − 134482 135972 1491 Locate
trnV-GAC gene − 136200 136271 72 Locate
rps12 gene + 137842 138632 791 Locate
rps7 gene + 138686 139153 468 Locate
ndhB gene + 139428 141639 2212 Locate
trnL-CAA gene + 142173 142253 81 Locate
ycf15 gene − 142514 142711 198 Locate
ycf2 gene − 142853 149662 6810 Locate
trnI-CAU gene + 149751 149824 74 Locate
rpl23 gene + 149984 150265 282 Locate
rpl2 gene + 150284 151766 1483 Locate
Status Available
Accession MW420963.1
Length 151,861 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources