LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 gene sequences

Coordinate-aware organelle record

Scutellaria tsinyunensis chloroplast dna

Available NC_050161.1 152,089 bp 130 genes
DNA resources Accession record
Scutellaria tsinyunensis chloroplast Biopython GenomeDiagram 1.79; GenBank local location segments. trnH-GUG · NC_050161.1 · 3–76 bp · − psbA · NC_050161.1 · 365–1,423 bp · − trnK-UUU · NC_050161.1 · 1,676–4,263 bp · − matK · NC_050161.1 · 1,971–3,506 bp · − rps16 · NC_050161.1 · 5,144–6,317 bp · − trnQ-UUG · NC_050161.1 · 7,336–7,407 bp · − trnS-GCU · NC_050161.1 · 8,547–8,634 bp · − atpA · NC_050161.1 · 10,411–11,934 bp · − atpF · NC_050161.1 · 12,017–13,244 bp · − atpH · NC_050161.1 · 13,600–13,845 bp · − atpI · NC_050161.1 · 14,833–15,576 bp · − rps2 · NC_050161.1 · 15,925–16,635 bp · − rpoC2 · NC_050161.1 · 16,852–21,057 bp · − rpoC1 · NC_050161.1 · 21,212–24,040 bp · − rpoB · NC_050161.1 · 24,067–27,279 bp · − psbM · NC_050161.1 · 30,339–30,443 bp · − trnD-GUC · NC_050161.1 · 30,970–31,043 bp · − trnY-GUA · NC_050161.1 · 31,157–31,240 bp · − trnS-UGA · NC_050161.1 · 35,992–36,083 bp · − trnfM-CAU · NC_050161.1 · 37,089–37,162 bp · − rps14 · NC_050161.1 · 37,312–37,614 bp · − psaB · NC_050161.1 · 37,742–39,946 bp · − psaA · NC_050161.1 · 39,972–42,224 bp · − ycf3 · NC_050161.1 · 42,894–44,818 bp · − rps4 · NC_050161.1 · 46,075–46,680 bp · − trnT-UGU · NC_050161.1 · 47,022–47,094 bp · − ndhJ · NC_050161.1 · 49,369–49,845 bp · − ndhK · NC_050161.1 · 49,953–50,630 bp · − ndhC · NC_050161.1 · 50,683–51,045 bp · − trnV-UAC · NC_050161.1 · 51,900–52,552 bp · − atpE · NC_050161.1 · 53,021–53,422 bp · − atpB · NC_050161.1 · 53,419–54,906 bp · − psbJ · NC_050161.1 · 64,531–64,653 bp · − psbL · NC_050161.1 · 64,787–64,903 bp · − psbF · NC_050161.1 · 64,927–65,046 bp · − psbE · NC_050161.1 · 65,061–65,312 bp · − trnW-CCA · NC_050161.1 · 66,724–66,797 bp · − trnP-UGG · NC_050161.1 · 66,967–67,040 bp · − rpl20 · NC_050161.1 · 68,838–69,224 bp · − rps12 · NC_050161.1 · 70,004–70,129 bp · − rps12 · NC_050161.1 · 97,344–98,134 bp · − clpP · NC_050161.1 · 70,272–72,204 bp · − psbN · NC_050161.1 · 74,564–74,695 bp · − rpoA · NC_050161.1 · 78,065–79,078 bp · − rps11 · NC_050161.1 · 79,150–79,566 bp · − rpl36 · NC_050161.1 · 79,668–79,781 bp · − infA · NC_050161.1 · 79,877–80,110 bp · − rps8 · NC_050161.1 · 80,230–80,640 bp · − rpl14 · NC_050161.1 · 80,811–81,179 bp · − rpl16 · NC_050161.1 · 81,306–82,539 bp · − rps3 · NC_050161.1 · 82,694–83,356 bp · − rpl22 · NC_050161.1 · 83,358–83,813 bp · − rps19 · NC_050161.1 · 83,873–84,151 bp · − rpl2 · NC_050161.1 · 84,206–85,688 bp · − rpl23 · NC_050161.1 · 85,707–85,988 bp · − trnI-CAU · NC_050161.1 · 86,148–86,221 bp · − trnL-CAA · NC_050161.1 · 93,714–93,794 bp · − ndhB · NC_050161.1 · 94,337–96,548 bp · − rps7 · NC_050161.1 · 96,823–97,290 bp · − trnN-GUU · NC_050161.1 · 108,154–108,225 bp · − ndhF · NC_050161.1 · 109,302–111,542 bp · − psaC · NC_050161.1 · 115,689–115,934 bp · − ndhE · NC_050161.1 · 116,191–116,496 bp · − ndhG · NC_050161.1 · 116,718–117,248 bp · − ndhI · NC_050161.1 · 117,613–118,113 bp · − ndhA · NC_050161.1 · 118,194–120,286 bp · − ndhH · NC_050161.1 · 120,288–121,469 bp · − rps15 · NC_050161.1 · 121,572–121,844 bp · − ycf1 · NC_050161.1 · 122,111–127,645 bp · − trnR-ACG · NC_050161.1 · 128,593–128,666 bp · − rrn5S · NC_050161.1 · 128,901–129,021 bp · − rrn4.5S · NC_050161.1 · 129,269–129,371 bp · − rrn23S · NC_050161.1 · 129,470–132,273 bp · − trnA-UGC · NC_050161.1 · 132,443–133,325 bp · − trnI-GAU · NC_050161.1 · 133,390–134,410 bp · − rrn16S · NC_050161.1 · 134,709–136,199 bp · − trnV-GAC · NC_050161.1 · 136,417–136,488 bp · − ycf15 · NC_050161.1 · 142,742–142,939 bp · − ycf2 · NC_050161.1 · 143,081–149,890 bp · − psbK · NC_050161.1 · 7,741–7,926 bp · + psbI · NC_050161.1 · 8,318–8,428 bp · + trnG-UCC · NC_050161.1 · 9,311–10,071 bp · + trnR-UCU · NC_050161.1 · 10,242–10,313 bp · + trnC-GCA · NC_050161.1 · 28,450–28,520 bp · + petN · NC_050161.1 · 29,238–29,327 bp · + trnT-GGU · NC_050161.1 · 31,948–32,019 bp · + psbD · NC_050161.1 · 33,327–34,388 bp · + psbC · NC_050161.1 · 34,336–35,757 bp · + psbZ · NC_050161.1 · 36,404–36,592 bp · + trnG-GCC · NC_050161.1 · 36,864–36,934 bp · + trnS-GGA · NC_050161.1 · 45,703–45,789 bp · + trnL-UAA · NC_050161.1 · 47,780–48,342 bp · + trnF-GAA · NC_050161.1 · 48,649–48,721 bp · + trnM-CAU · NC_050161.1 · 52,733–52,805 bp · + rbcL · NC_050161.1 · 55,677–57,119 bp · + accD · NC_050161.1 · 57,853–59,319 bp · + psaI · NC_050161.1 · 59,893–60,003 bp · + ycf4 · NC_050161.1 · 60,437–60,991 bp · + cemA · NC_050161.1 · 61,729–62,328 bp · + petA · NC_050161.1 · 62,535–63,497 bp · + petL · NC_050161.1 · 66,221–66,316 bp · + petG · NC_050161.1 · 66,492–66,605 bp · + psaJ · NC_050161.1 · 67,313–67,447 bp · + rpl33 · NC_050161.1 · 67,921–68,121 bp · + rps18 · NC_050161.1 · 68,296–68,601 bp · + rps12 · NC_050161.1 · 138,066–138,856 bp · + psbB · NC_050161.1 · 72,671–74,197 bp · + psbT · NC_050161.1 · 74,389–74,490 bp · + psbH · NC_050161.1 · 74,799–75,020 bp · + petB · NC_050161.1 · 75,145–76,512 bp · + petD · NC_050161.1 · 76,701–77,902 bp · + ycf2 · NC_050161.1 · 86,310–93,119 bp · + ycf15 · NC_050161.1 · 93,261–93,458 bp · + trnV-GAC · NC_050161.1 · 99,712–99,783 bp · + rrn16S · NC_050161.1 · 100,001–101,491 bp · + trnI-GAU · NC_050161.1 · 101,790–102,810 bp · + trnA-UGC · NC_050161.1 · 102,875–103,757 bp · + rrn23S · NC_050161.1 · 103,927–106,730 bp · + rrn4.5S · NC_050161.1 · 106,829–106,931 bp · + rrn5S · NC_050161.1 · 107,179–107,299 bp · + trnR-ACG · NC_050161.1 · 107,534–107,607 bp · + rpl32 · NC_050161.1 · 112,063–112,239 bp · + trnL-UAG · NC_050161.1 · 112,684–112,763 bp · + ccsA · NC_050161.1 · 112,860–113,834 bp · + trnN-GUU · NC_050161.1 · 127,975–128,046 bp · + rps7 · NC_050161.1 · 138,910–139,377 bp · + ndhB · NC_050161.1 · 139,652–141,863 bp · + trnL-CAA · NC_050161.1 · 142,406–142,486 bp · + trnI-CAU · NC_050161.1 · 149,979–150,052 bp · + rpl23 · NC_050161.1 · 150,212–150,493 bp · + rpl2 · NC_050161.1 · 150,512–151,994 bp · + 0 kb 13 kb 26 kb 39 kb 52 kb 65 kb 78 kb 91 kb 104 kb 117 kb 130 kb 143 kb Scutellaria tsinyunensis ANNOTATED PLASTOME NC_050161.1 152,089 bp · 130 genes Gene function Transfer RNA Photosystem II Other Ribosomal protein ATP synthase RNA polymerase Cytochrome Photosystem I NADH dehydrogenase Ribosomal RNA

Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram.

Gene-position browser

Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.

131 local segments
GeneTypeGroupStrandStartEndLength
trnH-GUGgenetranslation-rna−37674
psbAgenephotosystem-ii−36514231059
trnK-UUUgenetranslation-rna−167642632588
matKgeneother−197135061536
rps16generibosomal-protein−514463171174
trnQ-UUGgenetranslation-rna−7336740772
psbKgenephotosystem-ii+77417926186
psbIgenephotosystem-ii+83188428111
trnS-GCUgenetranslation-rna−8547863488
trnG-UCCgenetranslation-rna+931110071761
trnR-UCUgenetranslation-rna+102421031372
atpAgeneatp-synthase−10411119341524
atpFgeneatp-synthase−12017132441228
atpHgeneatp-synthase−1360013845246
atpIgeneatp-synthase−1483315576744
rps2generibosomal-protein−1592516635711
rpoC2generna-polymerase−16852210574206
rpoC1generna-polymerase−21212240402829
rpoBgenerna-polymerase−24067272793213
trnC-GCAgenetranslation-rna+284502852071
petNgenecytochrome+292382932790
psbMgenephotosystem-ii−3033930443105
trnD-GUCgenetranslation-rna−309703104374
trnY-GUAgenetranslation-rna−311573124084
trnT-GGUgenetranslation-rna+319483201972
psbDgenephotosystem-ii+33327343881062
psbCgenephotosystem-ii+34336357571422
trnS-UGAgenetranslation-rna−359923608392
psbZgenephotosystem-ii+3640436592189
trnG-GCCgenetranslation-rna+368643693471
trnfM-CAUgenetranslation-rna−370893716274
rps14generibosomal-protein−3731237614303
psaBgenephotosystem-i−37742399462205
psaAgenephotosystem-i−39972422242253
ycf3geneother−42894448181925
trnS-GGAgenetranslation-rna+457034578987
rps4generibosomal-protein−4607546680606
trnT-UGUgenetranslation-rna−470224709473
trnL-UAAgenetranslation-rna+4778048342563
trnF-GAAgenetranslation-rna+486494872173
ndhJgenenad-dehydrogenase−4936949845477
ndhKgenenad-dehydrogenase−4995350630678
ndhCgenenad-dehydrogenase−5068351045363
trnV-UACgenetranslation-rna−5190052552653
trnM-CAUgenetranslation-rna+527335280573
atpEgeneatp-synthase−5302153422402
atpBgeneatp-synthase−53419549061488
rbcLgeneother+55677571191443
accDgeneother+57853593191467
psaIgenephotosystem-i+5989360003111
ycf4geneother+6043760991555
cemAgeneother+6172962328600
petAgenecytochrome+6253563497963
psbJgenephotosystem-ii−6453164653123
psbLgenephotosystem-ii−6478764903117
psbFgenephotosystem-ii−6492765046120
psbEgenephotosystem-ii−6506165312252
petLgenecytochrome+662216631696
petGgenecytochrome+6649266605114
trnW-CCAgenetranslation-rna−667246679774
trnP-UGGgenetranslation-rna−669676704074
psaJgenephotosystem-i+6731367447135
rpl33generibosomal-protein+6792168121201
rps18generibosomal-protein+6829668601306
rpl20generibosomal-protein−6883869224387
rps12generibosomal-protein−7000470129126
clpPgeneother−70272722041933
psbBgenephotosystem-ii+72671741971527
psbTgenephotosystem-ii+7438974490102
psbNgenephotosystem-ii−7456474695132
psbHgenephotosystem-ii+7479975020222
petBgenecytochrome+75145765121368
petDgenecytochrome+76701779021202
rpoAgenerna-polymerase−78065790781014
rps11generibosomal-protein−7915079566417
rpl36generibosomal-protein−7966879781114
infAgeneother−7987780110234
rps8generibosomal-protein−8023080640411
rpl14generibosomal-protein−8081181179369
rpl16generibosomal-protein−81306825391234
rps3generibosomal-protein−8269483356663
rpl22generibosomal-protein−8335883813456
rps19generibosomal-protein−8387384151279
rpl2generibosomal-protein−84206856881483
rpl23generibosomal-protein−8570785988282
trnI-CAUgenetranslation-rna−861488622174
ycf2geneother+86310931196810
ycf15geneother+9326193458198
trnL-CAAgenetranslation-rna−937149379481
ndhBgenenad-dehydrogenase−94337965482212
rps7generibosomal-protein−9682397290468
rps12generibosomal-protein−9734498134791
trnV-GACgenetranslation-rna+997129978372
rrn16Sgeneribosomal-rna+1000011014911491
trnI-GAUgenetranslation-rna+1017901028101021
trnA-UGCgenetranslation-rna+102875103757883
rrn23Sgeneribosomal-rna+1039271067302804
rrn4.5Sgeneribosomal-rna+106829106931103
rrn5Sgeneribosomal-rna+107179107299121
trnR-ACGgenetranslation-rna+10753410760774
trnN-GUUgenetranslation-rna−10815410822572
ndhFgenenad-dehydrogenase−1093021115422241
rpl32generibosomal-protein+112063112239177
trnL-UAGgenetranslation-rna+11268411276380
ccsAgeneother+112860113834975
psaCgenephotosystem-i−115689115934246
ndhEgenenad-dehydrogenase−116191116496306
ndhGgenenad-dehydrogenase−116718117248531
ndhIgenenad-dehydrogenase−117613118113501
ndhAgenenad-dehydrogenase−1181941202862093
ndhHgenenad-dehydrogenase−1202881214691182
rps15generibosomal-protein−121572121844273
ycf1geneother−1221111276455535
trnN-GUUgenetranslation-rna+12797512804672
trnR-ACGgenetranslation-rna−12859312866674
rrn5Sgeneribosomal-rna−128901129021121
rrn4.5Sgeneribosomal-rna−129269129371103
rrn23Sgeneribosomal-rna−1294701322732804
trnA-UGCgenetranslation-rna−132443133325883
trnI-GAUgenetranslation-rna−1333901344101021
rrn16Sgeneribosomal-rna−1347091361991491
trnV-GACgenetranslation-rna−13641713648872
rps12generibosomal-protein+138066138856791
rps7generibosomal-protein+138910139377468
ndhBgenenad-dehydrogenase+1396521418632212
trnL-CAAgenetranslation-rna+14240614248681
ycf15geneother−142742142939198
ycf2geneother−1430811498906810
trnI-CAUgenetranslation-rna+14997915005274
rpl23generibosomal-protein+150212150493282
rpl2generibosomal-protein+1505121519941483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources
Chloroplast DNANC_050161.1DNA · accDNC_050161DNA · atpBNC_050161DNA · matKNC_050161DNA · ndhFNC_050161DNA · psbANC_050161DNA · rbcLNC_050161DNA · rps12NC_050161DNA · ycf1NC_050161