Scutellaria tuberifera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_059812.1 · 3–76 bp · −
psbA · NC_059812.1 · 386–1,444 bp · −
trnK-UUU · NC_059812.1 · 1,677–4,264 bp · −
matK · NC_059812.1 · 1,972–3,507 bp · −
rps16 · NC_059812.1 · 5,160–6,327 bp · −
trnQ-UUG · NC_059812.1 · 7,474–7,545 bp · −
trnS-GCU · NC_059812.1 · 8,677–8,764 bp · −
atpA · NC_059812.1 · 10,555–12,078 bp · −
atpF · NC_059812.1 · 12,153–13,380 bp · −
atpH · NC_059812.1 · 13,742–13,987 bp · −
atpI · NC_059812.1 · 14,984–15,727 bp · −
rps2 · NC_059812.1 · 16,076–16,786 bp · −
rpoC2 · NC_059812.1 · 17,003–21,208 bp · −
rpoC1 · NC_059812.1 · 21,363–24,198 bp · −
rpoB · NC_059812.1 · 24,225–27,437 bp · −
psbM · NC_059812.1 · 30,542–30,646 bp · −
trnD-GUC · NC_059812.1 · 31,171–31,244 bp · −
trnY-GUA · NC_059812.1 · 31,358–31,441 bp · −
trnS-UGA · NC_059812.1 · 36,212–36,303 bp · −
trnfM-CAU · NC_059812.1 · 37,299–37,372 bp · −
rps14 · NC_059812.1 · 37,522–37,824 bp · −
psaB · NC_059812.1 · 37,952–40,156 bp · −
psaA · NC_059812.1 · 40,182–42,434 bp · −
ycf3 · NC_059812.1 · 43,108–45,030 bp · −
rps4 · NC_059812.1 · 46,279–46,884 bp · −
trnT-UGU · NC_059812.1 · 47,226–47,298 bp · −
ndhJ · NC_059812.1 · 49,581–50,057 bp · −
ndhK · NC_059812.1 · 50,157–50,834 bp · −
ndhC · NC_059812.1 · 50,887–51,249 bp · −
trnV-UAC · NC_059812.1 · 52,246–52,898 bp · −
atpE · NC_059812.1 · 53,362–53,763 bp · −
atpB · NC_059812.1 · 53,760–55,247 bp · −
psbJ · NC_059812.1 · 64,685–64,807 bp · −
psbL · NC_059812.1 · 64,941–65,057 bp · −
psbF · NC_059812.1 · 65,081–65,200 bp · −
psbE · NC_059812.1 · 65,215–65,466 bp · −
trnW-CCA · NC_059812.1 · 66,876–66,949 bp · −
trnP-UGG · NC_059812.1 · 67,119–67,192 bp · −
rpl20 · NC_059812.1 · 68,988–69,374 bp · −
rps12 · NC_059812.1 · 70,157–70,282 bp · −
rps12 · NC_059812.1 · 97,503–98,293 bp · −
clpP · NC_059812.1 · 70,425–72,357 bp · −
psbN · NC_059812.1 · 74,713–74,844 bp · −
rpoA · NC_059812.1 · 78,218–79,231 bp · −
rps11 · NC_059812.1 · 79,303–79,719 bp · −
rpl36 · NC_059812.1 · 79,821–79,934 bp · −
infA · NC_059812.1 · 80,030–80,263 bp · −
rps8 · NC_059812.1 · 80,383–80,793 bp · −
rpl14 · NC_059812.1 · 80,959–81,327 bp · −
rpl16 · NC_059812.1 · 81,454–82,697 bp · −
rps3 · NC_059812.1 · 82,852–83,514 bp · −
rpl22 · NC_059812.1 · 83,516–83,971 bp · −
rps19 · NC_059812.1 · 84,031–84,309 bp · −
rpl2 · NC_059812.1 · 84,365–85,847 bp · −
rpl23 · NC_059812.1 · 85,866–86,147 bp · −
trnI-CAU · NC_059812.1 · 86,307–86,380 bp · −
trnL-CAA · NC_059812.1 · 93,873–93,953 bp · −
ndhB · NC_059812.1 · 94,496–96,707 bp · −
rps7 · NC_059812.1 · 96,982–97,449 bp · −
trnN-GUU · NC_059812.1 · 108,336–108,407 bp · −
ndhF · NC_059812.1 · 109,484–111,724 bp · −
psaC · NC_059812.1 · 115,869–116,114 bp · −
ndhE · NC_059812.1 · 116,371–116,676 bp · −
ndhG · NC_059812.1 · 116,907–117,437 bp · −
ndhI · NC_059812.1 · 117,802–118,302 bp · −
ndhA · NC_059812.1 · 118,383–120,482 bp · −
ndhH · NC_059812.1 · 120,484–121,665 bp · −
rps15 · NC_059812.1 · 121,768–122,040 bp · −
ycf1 · NC_059812.1 · 122,315–127,864 bp · −
trnR-ACG · NC_059812.1 · 128,812–128,885 bp · −
rrn5S · NC_059812.1 · 129,120–129,240 bp · −
rrn4.5S · NC_059812.1 · 129,488–129,590 bp · −
rrn23S · NC_059812.1 · 129,689–132,501 bp · −
trnA-UGC · NC_059812.1 · 132,671–133,557 bp · −
trnI-GAU · NC_059812.1 · 133,622–134,642 bp · −
rrn16S · NC_059812.1 · 134,941–136,431 bp · −
trnV-GAC · NC_059812.1 · 136,659–136,730 bp · −
ycf15 · NC_059812.1 · 142,984–143,181 bp · −
ycf2 · NC_059812.1 · 143,323–150,132 bp · −
psbK · NC_059812.1 · 7,870–8,055 bp · +
psbI · NC_059812.1 · 8,446–8,556 bp · +
trnG-UCC · NC_059812.1 · 9,452–10,212 bp · +
trnR-UCU · NC_059812.1 · 10,387–10,458 bp · +
trnC-GCA · NC_059812.1 · 28,599–28,669 bp · +
petN · NC_059812.1 · 29,372–29,461 bp · +
trnT-GGU · NC_059812.1 · 32,156–32,227 bp · +
psbD · NC_059812.1 · 33,538–34,599 bp · +
psbC · NC_059812.1 · 34,547–35,968 bp · +
psbZ · NC_059812.1 · 36,624–36,812 bp · +
trnG-GCC · NC_059812.1 · 37,084–37,154 bp · +
trnS-GGA · NC_059812.1 · 45,907–45,993 bp · +
trnL-UAA · NC_059812.1 · 47,985–48,553 bp · +
trnF-GAA · NC_059812.1 · 48,860–48,932 bp · +
trnM-CAU · NC_059812.1 · 53,080–53,152 bp · +
rbcL · NC_059812.1 · 56,019–57,461 bp · +
accD · NC_059812.1 · 58,172–59,638 bp · +
psaI · NC_059812.1 · 60,371–60,481 bp · +
ycf4 · NC_059812.1 · 60,915–61,469 bp · +
cemA · NC_059812.1 · 62,152–62,751 bp · +
petA · NC_059812.1 · 62,958–63,920 bp · +
petL · NC_059812.1 · 66,374–66,469 bp · +
petG · NC_059812.1 · 66,644–66,757 bp · +
psaJ · NC_059812.1 · 67,464–67,598 bp · +
rpl33 · NC_059812.1 · 68,070–68,270 bp · +
rps18 · NC_059812.1 · 68,445–68,750 bp · +
rps12 · NC_059812.1 · 138,308–138,536 bp · +
rps12 · NC_059812.1 · 139,073–139,098 bp · +
psbB · NC_059812.1 · 72,820–74,346 bp · +
psbT · NC_059812.1 · 74,538–74,639 bp · +
psbH · NC_059812.1 · 74,948–75,169 bp · +
petB · NC_059812.1 · 75,294–76,660 bp · +
petD · NC_059812.1 · 76,849–78,055 bp · +
ycf2 · NC_059812.1 · 86,469–93,278 bp · +
ycf15 · NC_059812.1 · 93,420–93,617 bp · +
trnV-GAC · NC_059812.1 · 99,871–99,942 bp · +
rrn16S · NC_059812.1 · 100,170–101,660 bp · +
trnI-GAU · NC_059812.1 · 101,959–102,979 bp · +
trnA-UGC · NC_059812.1 · 103,044–103,930 bp · +
rrn23S · NC_059812.1 · 104,100–106,912 bp · +
rrn4.5S · NC_059812.1 · 107,011–107,113 bp · +
rrn5S · NC_059812.1 · 107,361–107,481 bp · +
trnR-ACG · NC_059812.1 · 107,716–107,789 bp · +
ycf1 · NC_059812.1 · 108,737–109,519 bp · +
rpl32 · NC_059812.1 · 112,241–112,417 bp · +
trnL-UAG · NC_059812.1 · 112,860–112,939 bp · +
ccsA · NC_059812.1 · 113,040–114,014 bp · +
trnN-GUU · NC_059812.1 · 128,194–128,265 bp · +
rps7 · NC_059812.1 · 139,152–139,619 bp · +
ndhB · NC_059812.1 · 139,894–142,105 bp · +
trnL-CAA · NC_059812.1 · 142,648–142,728 bp · +
trnI-CAU · NC_059812.1 · 150,221–150,294 bp · +
rpl23 · NC_059812.1 · 150,454–150,735 bp · +
rpl2 · NC_059812.1 · 150,754–152,236 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria tuberifera
ANNOTATED PLASTOME
NC_059812.1
152,332 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38083 76166 114249 152332 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 386 1444 1059 Locate
trnK-UUU gene − 1677 4264 2588 Locate
matK gene − 1972 3507 1536 Locate
rps16 gene − 5160 6327 1168 Locate
trnQ-UUG gene − 7474 7545 72 Locate
psbK gene + 7870 8055 186 Locate
psbI gene + 8446 8556 111 Locate
trnS-GCU gene − 8677 8764 88 Locate
trnG-UCC gene + 9452 10212 761 Locate
trnR-UCU gene + 10387 10458 72 Locate
atpA gene − 10555 12078 1524 Locate
atpF gene − 12153 13380 1228 Locate
atpH gene − 13742 13987 246 Locate
atpI gene − 14984 15727 744 Locate
rps2 gene − 16076 16786 711 Locate
rpoC2 gene − 17003 21208 4206 Locate
rpoC1 gene − 21363 24198 2836 Locate
rpoB gene − 24225 27437 3213 Locate
trnC-GCA gene + 28599 28669 71 Locate
petN gene + 29372 29461 90 Locate
psbM gene − 30542 30646 105 Locate
trnD-GUC gene − 31171 31244 74 Locate
trnY-GUA gene − 31358 31441 84 Locate
trnT-GGU gene + 32156 32227 72 Locate
psbD gene + 33538 34599 1062 Locate
psbC gene + 34547 35968 1422 Locate
trnS-UGA gene − 36212 36303 92 Locate
psbZ gene + 36624 36812 189 Locate
trnG-GCC gene + 37084 37154 71 Locate
trnfM-CAU gene − 37299 37372 74 Locate
rps14 gene − 37522 37824 303 Locate
psaB gene − 37952 40156 2205 Locate
psaA gene − 40182 42434 2253 Locate
ycf3 gene − 43108 45030 1923 Locate
trnS-GGA gene + 45907 45993 87 Locate
rps4 gene − 46279 46884 606 Locate
trnT-UGU gene − 47226 47298 73 Locate
trnL-UAA gene + 47985 48553 569 Locate
trnF-GAA gene + 48860 48932 73 Locate
ndhJ gene − 49581 50057 477 Locate
ndhK gene − 50157 50834 678 Locate
ndhC gene − 50887 51249 363 Locate
trnV-UAC gene − 52246 52898 653 Locate
trnM-CAU gene + 53080 53152 73 Locate
atpE gene − 53362 53763 402 Locate
atpB gene − 53760 55247 1488 Locate
rbcL gene + 56019 57461 1443 Locate
accD gene + 58172 59638 1467 Locate
psaI gene + 60371 60481 111 Locate
ycf4 gene + 60915 61469 555 Locate
cemA gene + 62152 62751 600 Locate
petA gene + 62958 63920 963 Locate
psbJ gene − 64685 64807 123 Locate
psbL gene − 64941 65057 117 Locate
psbF gene − 65081 65200 120 Locate
psbE gene − 65215 65466 252 Locate
petL gene + 66374 66469 96 Locate
petG gene + 66644 66757 114 Locate
trnW-CCA gene − 66876 66949 74 Locate
trnP-UGG gene − 67119 67192 74 Locate
psaJ gene + 67464 67598 135 Locate
rpl33 gene + 68070 68270 201 Locate
rps18 gene + 68445 68750 306 Locate
rpl20 gene − 68988 69374 387 Locate
rps12 gene − 70157 70282 126 Locate
clpP gene − 70425 72357 1933 Locate
psbB gene + 72820 74346 1527 Locate
psbT gene + 74538 74639 102 Locate
psbN gene − 74713 74844 132 Locate
psbH gene + 74948 75169 222 Locate
petB gene + 75294 76660 1367 Locate
petD gene + 76849 78055 1207 Locate
rpoA gene − 78218 79231 1014 Locate
rps11 gene − 79303 79719 417 Locate
rpl36 gene − 79821 79934 114 Locate
infA gene − 80030 80263 234 Locate
rps8 gene − 80383 80793 411 Locate
rpl14 gene − 80959 81327 369 Locate
rpl16 gene − 81454 82697 1244 Locate
rps3 gene − 82852 83514 663 Locate
rpl22 gene − 83516 83971 456 Locate
rps19 gene − 84031 84309 279 Locate
rpl2 gene − 84365 85847 1483 Locate
rpl23 gene − 85866 86147 282 Locate
trnI-CAU gene − 86307 86380 74 Locate
ycf2 gene + 86469 93278 6810 Locate
ycf15 gene + 93420 93617 198 Locate
trnL-CAA gene − 93873 93953 81 Locate
ndhB gene − 94496 96707 2212 Locate
rps7 gene − 96982 97449 468 Locate
rps12 gene − 97503 98293 791 Locate
trnV-GAC gene + 99871 99942 72 Locate
rrn16S gene + 100170 101660 1491 Locate
trnI-GAU gene + 101959 102979 1021 Locate
trnA-UGC gene + 103044 103930 887 Locate
rrn23S gene + 104100 106912 2813 Locate
rrn4.5S gene + 107011 107113 103 Locate
rrn5S gene + 107361 107481 121 Locate
trnR-ACG gene + 107716 107789 74 Locate
trnN-GUU gene − 108336 108407 72 Locate
ycf1 gene + 108737 109519 783 Locate
ndhF gene − 109484 111724 2241 Locate
rpl32 gene + 112241 112417 177 Locate
trnL-UAG gene + 112860 112939 80 Locate
ccsA gene + 113040 114014 975 Locate
psaC gene − 115869 116114 246 Locate
ndhE gene − 116371 116676 306 Locate
ndhG gene − 116907 117437 531 Locate
ndhI gene − 117802 118302 501 Locate
ndhA gene − 118383 120482 2100 Locate
ndhH gene − 120484 121665 1182 Locate
rps15 gene − 121768 122040 273 Locate
ycf1 gene − 122315 127864 5550 Locate
trnN-GUU gene + 128194 128265 72 Locate
trnR-ACG gene − 128812 128885 74 Locate
rrn5S gene − 129120 129240 121 Locate
rrn4.5S gene − 129488 129590 103 Locate
rrn23S gene − 129689 132501 2813 Locate
trnA-UGC gene − 132671 133557 887 Locate
trnI-GAU gene − 133622 134642 1021 Locate
rrn16S gene − 134941 136431 1491 Locate
trnV-GAC gene − 136659 136730 72 Locate
rps12 gene + 138308 138536 229 Locate
rps12 gene + 139073 139098 26 Locate
rps7 gene + 139152 139619 468 Locate
ndhB gene + 139894 142105 2212 Locate
trnL-CAA gene + 142648 142728 81 Locate
ycf15 gene − 142984 143181 198 Locate
ycf2 gene − 143323 150132 6810 Locate
trnI-CAU gene + 150221 150294 74 Locate
rpl23 gene + 150454 150735 282 Locate
rpl2 gene + 150754 152236 1483 Locate
Status Available
Accession NC_059812.1
Length 152,332 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources