Stachys geobombycis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_082543.1 · 2–75 bp · −
psbA · NC_082543.1 · 404–1,462 bp · −
trnK-UUU · NC_082543.1 · 1,695–4,277 bp · −
matK · NC_082543.1 · 1,996–3,525 bp · −
rps16 · NC_082543.1 · 4,932–6,072 bp · −
trnQ-UUG · NC_082543.1 · 6,898–6,969 bp · −
trnS-GCU · NC_082543.1 · 8,099–8,186 bp · −
atpA · NC_082543.1 · 9,953–11,476 bp · −
atpF · NC_082543.1 · 11,564–12,775 bp · −
atpH · NC_082543.1 · 13,142–13,387 bp · −
atpI · NC_082543.1 · 14,343–15,086 bp · −
rps2 · NC_082543.1 · 15,317–16,027 bp · −
rpoC2 · NC_082543.1 · 16,358–20,446 bp · −
rpoC1 · NC_082543.1 · 20,601–23,437 bp · −
rpoB · NC_082543.1 · 23,464–26,676 bp · −
psbM · NC_082543.1 · 29,275–29,379 bp · −
trnD-GUC · NC_082543.1 · 29,898–29,971 bp · −
trnY-GUA · NC_082543.1 · 30,087–30,170 bp · −
trnE-UUC · NC_082543.1 · 30,230–30,302 bp · −
trnS-UGA · NC_082543.1 · 34,674–34,766 bp · −
trnM-CAU · NC_082543.1 · 35,727–35,800 bp · −
rps14 · NC_082543.1 · 35,950–36,252 bp · −
psaB · NC_082543.1 · 36,388–38,592 bp · −
psaA · NC_082543.1 · 38,618–40,870 bp · −
ycf3 · NC_082543.1 · 41,620–43,562 bp · −
rps4 · NC_082543.1 · 44,113–44,718 bp · −
trnT-UGU · NC_082543.1 · 45,104–45,176 bp · −
ndhJ · NC_082543.1 · 47,462–47,938 bp · −
ndhK · NC_082543.1 · 48,039–48,716 bp · −
ndhC · NC_082543.1 · 48,770–49,132 bp · −
atpE · NC_082543.1 · 51,197–51,598 bp · −
atpB · NC_082543.1 · 51,595–53,091 bp · −
psbJ · NC_082543.1 · 62,228–62,350 bp · −
psbL · NC_082543.1 · 62,488–62,604 bp · −
psbF · NC_082543.1 · 62,628–62,747 bp · −
psbE · NC_082543.1 · 62,762–63,013 bp · −
trnW-CCA · NC_082543.1 · 64,443–64,516 bp · −
trnP-UGG · NC_082543.1 · 64,686–64,759 bp · −
rpl20 · NC_082543.1 · 66,514–66,900 bp · −
rps12 · NC_082543.1 · 67,641–67,754 bp · −
rps12 · NC_082543.1 · 94,963–95,756 bp · −
clpP · NC_082543.1 · 67,880–69,735 bp · −
psbN · NC_082543.1 · 72,068–72,199 bp · −
rpoA · NC_082543.1 · 75,587–76,600 bp · −
rps11 · NC_082543.1 · 76,672–77,088 bp · −
rpl36 · NC_082543.1 · 77,191–77,304 bp · −
infA · NC_082543.1 · 77,400–77,633 bp · −
rps8 · NC_082543.1 · 77,757–78,170 bp · −
rpl14 · NC_082543.1 · 78,338–78,706 bp · −
rpl16 · NC_082543.1 · 78,833–80,126 bp · −
rps3 · NC_082543.1 · 80,280–80,942 bp · −
rpl22 · NC_082543.1 · 80,927–81,391 bp · −
rps19 · NC_082543.1 · 81,455–81,733 bp · −
rpl2 · NC_082543.1 · 81,785–83,276 bp · −
rpl23 · NC_082543.1 · 83,295–83,576 bp · −
trnM-CAU · NC_082543.1 · 83,750–83,823 bp · −
trnL-CAA · NC_082543.1 · 91,330–91,410 bp · −
ndhB · NC_082543.1 · 91,956–94,167 bp · −
rps7 · NC_082543.1 · 94,442–94,909 bp · −
trnN-GUU · NC_082543.1 · 105,857–105,928 bp · −
ndhF · NC_082543.1 · 107,318–109,546 bp · −
ndhD · NC_082543.1 · 112,275–113,804 bp · −
psaC · NC_082543.1 · 113,899–114,144 bp · −
ndhE · NC_082543.1 · 114,396–114,701 bp · −
ndhG · NC_082543.1 · 114,911–115,441 bp · −
ndhI · NC_082543.1 · 115,817–116,323 bp · −
ndhA · NC_082543.1 · 116,403–118,515 bp · −
ndhH · NC_082543.1 · 118,517–119,698 bp · −
rps15 · NC_082543.1 · 119,799–120,071 bp · −
ycf1 · NC_082543.1 · 120,461–126,004 bp · −
trnR-ACG · NC_082543.1 · 126,969–127,042 bp · −
rrn5S · NC_082543.1 · 127,277–127,397 bp · −
rrn4.5S · NC_082543.1 · 127,653–127,755 bp · −
rrn23S · NC_082543.1 · 127,854–130,664 bp · −
trnA-UGC · NC_082543.1 · 130,856–131,734 bp · −
trnI-UUC · NC_082543.1 · 131,799–132,807 bp · −
rrn16S · NC_082543.1 · 133,101–134,591 bp · −
trnV-GAC · NC_082543.1 · 134,819–134,890 bp · −
ycf15 · NC_082543.1 · 141,189–141,386 bp · −
ycf2 · NC_082543.1 · 141,480–145,943 bp · −
psbK · NC_082543.1 · 7,306–7,491 bp · +
psbI · NC_082543.1 · 7,867–7,977 bp · +
trnS-CGA · NC_082543.1 · 8,864–9,625 bp · +
trnR-UCU · NC_082543.1 · 9,785–9,856 bp · +
trnC-GCA · NC_082543.1 · 27,775–27,845 bp · +
petN · NC_082543.1 · 28,683–28,772 bp · +
trnT-GGU · NC_082543.1 · 30,873–30,944 bp · +
psbD · NC_082543.1 · 32,015–33,076 bp · +
psbC · NC_082543.1 · 33,024–34,445 bp · +
psbZ · NC_082543.1 · 35,094–35,282 bp · +
trnG-GCC · NC_082543.1 · 35,508–35,578 bp · +
trnS-GGA · NC_082543.1 · 43,879–43,965 bp · +
trnL-UAA · NC_082543.1 · 45,861–46,434 bp · +
trnF-GAA · NC_082543.1 · 46,730–46,802 bp · +
trnM-CAU · NC_082543.1 · 50,911–50,983 bp · +
rbcL · NC_082543.1 · 53,893–55,338 bp · +
accD · NC_082543.1 · 56,039–57,505 bp · +
psaI · NC_082543.1 · 57,903–58,013 bp · +
ycf4 · NC_082543.1 · 58,448–59,002 bp · +
cemA · NC_082543.1 · 59,309–59,998 bp · +
petA · NC_082543.1 · 60,222–61,184 bp · +
petL · NC_082543.1 · 63,934–64,029 bp · +
petG · NC_082543.1 · 64,204–64,317 bp · +
psaJ · NC_082543.1 · 65,032–65,166 bp · +
rpl33 · NC_082543.1 · 65,646–65,846 bp · +
rps18 · NC_082543.1 · 65,992–66,297 bp · +
rps12 · NC_082543.1 · 136,502–137,295 bp · +
psbB · NC_082543.1 · 70,173–71,699 bp · +
psbT · NC_082543.1 · 71,893–71,994 bp · +
psbH · NC_082543.1 · 72,303–72,524 bp · +
petB · NC_082543.1 · 72,649–74,021 bp · +
petD · NC_082543.1 · 74,215–75,424 bp · +
ycf2 · NC_082543.1 · 86,315–90,778 bp · +
ycf15 · NC_082543.1 · 90,872–91,069 bp · +
trnV-GAC · NC_082543.1 · 97,368–97,439 bp · +
rrn16S · NC_082543.1 · 97,667–99,157 bp · +
trnI-UUC · NC_082543.1 · 99,451–100,459 bp · +
trnA-UGC · NC_082543.1 · 100,524–101,402 bp · +
rrn23S · NC_082543.1 · 101,594–104,404 bp · +
rrn4.5S · NC_082543.1 · 104,503–104,605 bp · +
rrn5S · NC_082543.1 · 104,861–104,981 bp · +
trnR-ACG · NC_082543.1 · 105,216–105,289 bp · +
rpl32 · NC_082543.1 · 110,037–110,213 bp · +
trnL-UAG · NC_082543.1 · 110,955–111,034 bp · +
ccsA · NC_082543.1 · 111,122–112,093 bp · +
trnN-GUU · NC_082543.1 · 126,330–126,401 bp · +
rps7 · NC_082543.1 · 137,349–137,816 bp · +
ndhB · NC_082543.1 · 138,091–140,302 bp · +
trnL-CAA · NC_082543.1 · 140,848–140,928 bp · +
trnM-CAU · NC_082543.1 · 148,435–148,508 bp · +
rpl23 · NC_082543.1 · 148,682–148,963 bp · +
rpl2 · NC_082543.1 · 148,982–150,473 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys geobombycis
ANNOTATED PLASTOME
NC_082543.1
150,566 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37642 75283 112924 150566 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-UUC trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-UUC rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 404 1462 1059 Locate
trnK-UUU gene − 1695 4277 2583 Locate
matK gene − 1996 3525 1530 Locate
rps16 gene − 4932 6072 1141 Locate
trnQ-UUG gene − 6898 6969 72 Locate
psbK gene + 7306 7491 186 Locate
psbI gene + 7867 7977 111 Locate
trnS-GCU gene − 8099 8186 88 Locate
trnS-CGA gene + 8864 9625 762 Locate
trnR-UCU gene + 9785 9856 72 Locate
atpA gene − 9953 11476 1524 Locate
atpF gene − 11564 12775 1212 Locate
atpH gene − 13142 13387 246 Locate
atpI gene − 14343 15086 744 Locate
rps2 gene − 15317 16027 711 Locate
rpoC2 gene − 16358 20446 4089 Locate
rpoC1 gene − 20601 23437 2837 Locate
rpoB gene − 23464 26676 3213 Locate
trnC-GCA gene + 27775 27845 71 Locate
petN gene + 28683 28772 90 Locate
psbM gene − 29275 29379 105 Locate
trnD-GUC gene − 29898 29971 74 Locate
trnY-GUA gene − 30087 30170 84 Locate
trnE-UUC gene − 30230 30302 73 Locate
trnT-GGU gene + 30873 30944 72 Locate
psbD gene + 32015 33076 1062 Locate
psbC gene + 33024 34445 1422 Locate
trnS-UGA gene − 34674 34766 93 Locate
psbZ gene + 35094 35282 189 Locate
trnG-GCC gene + 35508 35578 71 Locate
trnM-CAU gene − 35727 35800 74 Locate
rps14 gene − 35950 36252 303 Locate
psaB gene − 36388 38592 2205 Locate
psaA gene − 38618 40870 2253 Locate
ycf3 gene − 41620 43562 1943 Locate
trnS-GGA gene + 43879 43965 87 Locate
rps4 gene − 44113 44718 606 Locate
trnT-UGU gene − 45104 45176 73 Locate
trnL-UAA gene + 45861 46434 574 Locate
trnF-GAA gene + 46730 46802 73 Locate
ndhJ gene − 47462 47938 477 Locate
ndhK gene − 48039 48716 678 Locate
ndhC gene − 48770 49132 363 Locate
trnM-CAU gene + 50911 50983 73 Locate
atpE gene − 51197 51598 402 Locate
atpB gene − 51595 53091 1497 Locate
rbcL gene + 53893 55338 1446 Locate
accD gene + 56039 57505 1467 Locate
psaI gene + 57903 58013 111 Locate
ycf4 gene + 58448 59002 555 Locate
cemA gene + 59309 59998 690 Locate
petA gene + 60222 61184 963 Locate
psbJ gene − 62228 62350 123 Locate
psbL gene − 62488 62604 117 Locate
psbF gene − 62628 62747 120 Locate
psbE gene − 62762 63013 252 Locate
petL gene + 63934 64029 96 Locate
petG gene + 64204 64317 114 Locate
trnW-CCA gene − 64443 64516 74 Locate
trnP-UGG gene − 64686 64759 74 Locate
psaJ gene + 65032 65166 135 Locate
rpl33 gene + 65646 65846 201 Locate
rps18 gene + 65992 66297 306 Locate
rpl20 gene − 66514 66900 387 Locate
rps12 gene − 67641 67754 114 Locate
clpP gene − 67880 69735 1856 Locate
psbB gene + 70173 71699 1527 Locate
psbT gene + 71893 71994 102 Locate
psbN gene − 72068 72199 132 Locate
psbH gene + 72303 72524 222 Locate
petB gene + 72649 74021 1373 Locate
petD gene + 74215 75424 1210 Locate
rpoA gene − 75587 76600 1014 Locate
rps11 gene − 76672 77088 417 Locate
rpl36 gene − 77191 77304 114 Locate
infA gene − 77400 77633 234 Locate
rps8 gene − 77757 78170 414 Locate
rpl14 gene − 78338 78706 369 Locate
rpl16 gene − 78833 80126 1294 Locate
rps3 gene − 80280 80942 663 Locate
rpl22 gene − 80927 81391 465 Locate
rps19 gene − 81455 81733 279 Locate
rpl2 gene − 81785 83276 1492 Locate
rpl23 gene − 83295 83576 282 Locate
trnM-CAU gene − 83750 83823 74 Locate
ycf2 gene + 86315 90778 4464 Locate
ycf15 gene + 90872 91069 198 Locate
trnL-CAA gene − 91330 91410 81 Locate
ndhB gene − 91956 94167 2212 Locate
rps7 gene − 94442 94909 468 Locate
rps12 gene − 94963 95756 794 Locate
trnV-GAC gene + 97368 97439 72 Locate
rrn16S gene + 97667 99157 1491 Locate
trnI-UUC gene + 99451 100459 1009 Locate
trnA-UGC gene + 100524 101402 879 Locate
rrn23S gene + 101594 104404 2811 Locate
rrn4.5S gene + 104503 104605 103 Locate
rrn5S gene + 104861 104981 121 Locate
trnR-ACG gene + 105216 105289 74 Locate
trnN-GUU gene − 105857 105928 72 Locate
ndhF gene − 107318 109546 2229 Locate
rpl32 gene + 110037 110213 177 Locate
trnL-UAG gene + 110955 111034 80 Locate
ccsA gene + 111122 112093 972 Locate
ndhD gene − 112275 113804 1530 Locate
psaC gene − 113899 114144 246 Locate
ndhE gene − 114396 114701 306 Locate
ndhG gene − 114911 115441 531 Locate
ndhI gene − 115817 116323 507 Locate
ndhA gene − 116403 118515 2113 Locate
ndhH gene − 118517 119698 1182 Locate
rps15 gene − 119799 120071 273 Locate
ycf1 gene − 120461 126004 5544 Locate
trnN-GUU gene + 126330 126401 72 Locate
trnR-ACG gene − 126969 127042 74 Locate
rrn5S gene − 127277 127397 121 Locate
rrn4.5S gene − 127653 127755 103 Locate
rrn23S gene − 127854 130664 2811 Locate
trnA-UGC gene − 130856 131734 879 Locate
trnI-UUC gene − 131799 132807 1009 Locate
rrn16S gene − 133101 134591 1491 Locate
trnV-GAC gene − 134819 134890 72 Locate
rps12 gene + 136502 137295 794 Locate
rps7 gene + 137349 137816 468 Locate
ndhB gene + 138091 140302 2212 Locate
trnL-CAA gene + 140848 140928 81 Locate
ycf15 gene − 141189 141386 198 Locate
ycf2 gene − 141480 145943 4464 Locate
trnM-CAU gene + 148435 148508 74 Locate
rpl23 gene + 148682 148963 282 Locate
rpl2 gene + 148982 150473 1492 Locate
Status Available
Accession NC_082543.1
Length 150,566 bp
GC content 38.5%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources