Stachys recta subsp. recta chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272180.1 · 2–75 bp · −
psbA · PP272180.1 · 533–1,591 bp · −
trnK-UUU · PP272180.1 · 1,822–4,407 bp · −
matK · PP272180.1 · 2,123–3,652 bp · −
rps16 · PP272180.1 · 5,071–6,211 bp · −
trnQ-UUG · PP272180.1 · 6,905–6,976 bp · −
trnS-GCU · PP272180.1 · 8,108–8,195 bp · −
atpA · PP272180.1 · 10,003–11,526 bp · −
atpF · PP272180.1 · 11,614–12,823 bp · −
atpH · PP272180.1 · 13,200–13,445 bp · −
atpI · PP272180.1 · 14,252–14,995 bp · −
rps2 · PP272180.1 · 15,220–15,930 bp · −
rpoC2 · PP272180.1 · 16,257–20,333 bp · −
rpoC1 · PP272180.1 · 20,500–23,331 bp · −
rpoB · PP272180.1 · 23,358–26,570 bp · −
psbM · PP272180.1 · 29,155–29,259 bp · −
trnD-GUC · PP272180.1 · 29,789–29,862 bp · −
trnY-GUA · PP272180.1 · 29,980–30,063 bp · −
trnE-UUC · PP272180.1 · 30,115–30,187 bp · −
trnS-UGA · PP272180.1 · 34,629–34,721 bp · −
trnM-CAU · PP272180.1 · 35,672–35,745 bp · −
rps14 · PP272180.1 · 35,895–36,197 bp · −
psaB · PP272180.1 · 36,331–38,535 bp · −
psaA · PP272180.1 · 38,561–40,813 bp · −
ycf3 · PP272180.1 · 41,542–43,486 bp · −
rps4 · PP272180.1 · 44,037–44,642 bp · −
trnT-UGU · PP272180.1 · 45,042–45,114 bp · −
ndhJ · PP272180.1 · 47,291–47,767 bp · −
ndhK · PP272180.1 · 47,868–48,545 bp · −
ndhC · PP272180.1 · 48,599–48,961 bp · −
trnV · PP272180.1 · 49,905–50,563 bp · −
atpE · PP272180.1 · 51,037–51,438 bp · −
atpB · PP272180.1 · 51,435–52,931 bp · −
psbJ · PP272180.1 · 62,060–62,182 bp · −
psbL · PP272180.1 · 62,320–62,436 bp · −
psbF · PP272180.1 · 62,460–62,579 bp · −
psbE · PP272180.1 · 62,594–62,845 bp · −
trnW-CCA · PP272180.1 · 64,277–64,350 bp · −
trnP-UGG · PP272180.1 · 64,519–64,592 bp · −
rpl20 · PP272180.1 · 66,348–66,734 bp · −
rps12 · PP272180.1 · 67,478–67,591 bp · −
rps12 · PP272180.1 · 94,828–95,621 bp · −
clpP · PP272180.1 · 67,716–69,591 bp · −
psbN · PP272180.1 · 71,927–72,058 bp · −
rpoA · PP272180.1 · 75,455–76,468 bp · −
rps11 · PP272180.1 · 76,540–76,956 bp · −
rpl36 · PP272180.1 · 77,059–77,172 bp · −
infA · PP272180.1 · 77,268–77,501 bp · −
rps8 · PP272180.1 · 77,624–78,037 bp · −
rpl14 · PP272180.1 · 78,205–78,573 bp · −
rpl16 · PP272180.1 · 78,700–80,005 bp · −
rps3 · PP272180.1 · 80,151–80,813 bp · −
rpl22 · PP272180.1 · 80,798–81,262 bp · −
rps19 · PP272180.1 · 81,326–81,604 bp · −
rpl2 · PP272180.1 · 81,656–83,147 bp · −
rpl23 · PP272180.1 · 83,166–83,447 bp · −
trnM-CAU · PP272180.1 · 83,621–83,694 bp · −
trnL-CAA · PP272180.1 · 91,196–91,276 bp · −
ndhB · PP272180.1 · 91,821–94,032 bp · −
rps7 · PP272180.1 · 94,307–94,774 bp · −
trnN-GUU · PP272180.1 · 105,714–105,785 bp · −
ndhF · PP272180.1 · 107,175–109,403 bp · −
ndhD · PP272180.1 · 112,037–113,566 bp · −
psaC · PP272180.1 · 113,661–113,906 bp · −
ndhE · PP272180.1 · 114,158–114,463 bp · −
ndhG · PP272180.1 · 114,673–115,203 bp · −
ndhI · PP272180.1 · 115,562–116,068 bp · −
ndhA · PP272180.1 · 116,148–118,290 bp · −
ndhH · PP272180.1 · 118,292–119,473 bp · −
rps15 · PP272180.1 · 119,574–119,846 bp · −
ycf1 · PP272180.1 · 120,239–125,764 bp · −
trnR-ACG · PP272180.1 · 126,722–126,795 bp · −
rrn5S · PP272180.1 · 127,030–127,150 bp · −
rrn4.5S · PP272180.1 · 127,406–127,508 bp · −
rrn23S · PP272180.1 · 127,607–130,417 bp · −
trnA-UGC · PP272180.1 · 130,609–131,487 bp · −
trnI-UUC · PP272180.1 · 131,552–132,555 bp · −
rrn16S · PP272180.1 · 132,845–134,335 bp · −
trnV-GAC · PP272180.1 · 134,563–134,634 bp · −
ycf15 · PP272180.1 · 140,941–141,189 bp · −
ycf2 · PP272180.1 · 141,232–148,092 bp · −
psbK · PP272180.1 · 7,313–7,498 bp · +
psbI · PP272180.1 · 7,876–7,986 bp · +
trnG-UCC · PP272180.1 · 8,900–9,658 bp · +
trnR-UCU · PP272180.1 · 9,835–9,906 bp · +
trnC-GCA · PP272180.1 · 27,670–27,740 bp · +
petN · PP272180.1 · 28,562–28,651 bp · +
trnT-GGU · PP272180.1 · 30,812–30,883 bp · +
psbD · PP272180.1 · 31,970–33,031 bp · +
psbC · PP272180.1 · 32,979–34,400 bp · +
psbZ · PP272180.1 · 35,049–35,237 bp · +
trnG-GCC · PP272180.1 · 35,461–35,531 bp · +
trnS-GGA · PP272180.1 · 43,793–43,879 bp · +
trnL-UAA · PP272180.1 · 45,786–46,359 bp · +
trnF-GAA · PP272180.1 · 46,533–46,605 bp · +
trnM-CAU · PP272180.1 · 50,752–50,824 bp · +
rbcL · PP272180.1 · 53,735–55,180 bp · +
accD · PP272180.1 · 55,872–57,329 bp · +
psaI · PP272180.1 · 57,737–57,847 bp · +
ycf4 · PP272180.1 · 58,282–58,836 bp · +
cemA · PP272180.1 · 59,148–59,837 bp · +
petA · PP272180.1 · 60,054–61,016 bp · +
petL · PP272180.1 · 63,768–63,863 bp · +
petG · PP272180.1 · 64,038–64,151 bp · +
psaJ · PP272180.1 · 64,867–65,001 bp · +
rpl33 · PP272180.1 · 65,480–65,680 bp · +
rps18 · PP272180.1 · 65,827–66,132 bp · +
rps12 · PP272180.1 · 136,254–137,047 bp · +
psbB · PP272180.1 · 70,034–71,560 bp · +
psbT · PP272180.1 · 71,752–71,853 bp · +
psbH · PP272180.1 · 72,162–72,383 bp · +
petB · PP272180.1 · 72,508–73,888 bp · +
petD · PP272180.1 · 74,083–75,292 bp · +
ycf2 · PP272180.1 · 83,783–90,643 bp · +
ycf15 · PP272180.1 · 90,686–90,934 bp · +
trnV-GAC · PP272180.1 · 97,241–97,312 bp · +
rrn16S · PP272180.1 · 97,540–99,030 bp · +
trnI-UUC · PP272180.1 · 99,320–100,323 bp · +
trnA-UGC · PP272180.1 · 100,388–101,266 bp · +
rrn23S · PP272180.1 · 101,458–104,268 bp · +
rrn4.5S · PP272180.1 · 104,367–104,469 bp · +
rrn5S · PP272180.1 · 104,725–104,845 bp · +
trnR-ACG · PP272180.1 · 105,080–105,153 bp · +
ycf1 · PP272180.1 · 106,111–107,241 bp · +
rpl32 · PP272180.1 · 109,844–110,020 bp · +
trnL-UAG · PP272180.1 · 110,717–110,796 bp · +
ccsA · PP272180.1 · 110,884–111,855 bp · +
trnN-GUU · PP272180.1 · 126,090–126,161 bp · +
rps7 · PP272180.1 · 137,101–137,568 bp · +
ndhB · PP272180.1 · 137,843–140,054 bp · +
trnL-CAA · PP272180.1 · 140,599–140,679 bp · +
trnM-CAU · PP272180.1 · 148,181–148,254 bp · +
rpl23 · PP272180.1 · 148,428–148,709 bp · +
rpl2 · PP272180.1 · 148,728–150,219 bp · +
rps19 · PP272180.1 · 150,271–150,312 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys recta subsp. recta
ANNOTATED PLASTOME
PP272180.1
150,312 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37578 75156 112734 150312 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-UUC trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-UUC rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 533 1591 1059 Locate
trnK-UUU gene − 1822 4407 2586 Locate
matK gene − 2123 3652 1530 Locate
rps16 gene − 5071 6211 1141 Locate
trnQ-UUG gene − 6905 6976 72 Locate
psbK gene + 7313 7498 186 Locate
psbI gene + 7876 7986 111 Locate
trnS-GCU gene − 8108 8195 88 Locate
trnG-UCC gene + 8900 9658 759 Locate
trnR-UCU gene + 9835 9906 72 Locate
atpA gene − 10003 11526 1524 Locate
atpF gene − 11614 12823 1210 Locate
atpH gene − 13200 13445 246 Locate
atpI gene − 14252 14995 744 Locate
rps2 gene − 15220 15930 711 Locate
rpoC2 gene − 16257 20333 4077 Locate
rpoC1 gene − 20500 23331 2832 Locate
rpoB gene − 23358 26570 3213 Locate
trnC-GCA gene + 27670 27740 71 Locate
petN gene + 28562 28651 90 Locate
psbM gene − 29155 29259 105 Locate
trnD-GUC gene − 29789 29862 74 Locate
trnY-GUA gene − 29980 30063 84 Locate
trnE-UUC gene − 30115 30187 73 Locate
trnT-GGU gene + 30812 30883 72 Locate
psbD gene + 31970 33031 1062 Locate
psbC gene + 32979 34400 1422 Locate
trnS-UGA gene − 34629 34721 93 Locate
psbZ gene + 35049 35237 189 Locate
trnG-GCC gene + 35461 35531 71 Locate
trnM-CAU gene − 35672 35745 74 Locate
rps14 gene − 35895 36197 303 Locate
psaB gene − 36331 38535 2205 Locate
psaA gene − 38561 40813 2253 Locate
ycf3 gene − 41542 43486 1945 Locate
trnS-GGA gene + 43793 43879 87 Locate
rps4 gene − 44037 44642 606 Locate
trnT-UGU gene − 45042 45114 73 Locate
trnL-UAA gene + 45786 46359 574 Locate
trnF-GAA gene + 46533 46605 73 Locate
ndhJ gene − 47291 47767 477 Locate
ndhK gene − 47868 48545 678 Locate
ndhC gene − 48599 48961 363 Locate
trnV gene − 49905 50563 659 Locate
trnM-CAU gene + 50752 50824 73 Locate
atpE gene − 51037 51438 402 Locate
atpB gene − 51435 52931 1497 Locate
rbcL gene + 53735 55180 1446 Locate
accD gene + 55872 57329 1458 Locate
psaI gene + 57737 57847 111 Locate
ycf4 gene + 58282 58836 555 Locate
cemA gene + 59148 59837 690 Locate
petA gene + 60054 61016 963 Locate
psbJ gene − 62060 62182 123 Locate
psbL gene − 62320 62436 117 Locate
psbF gene − 62460 62579 120 Locate
psbE gene − 62594 62845 252 Locate
petL gene + 63768 63863 96 Locate
petG gene + 64038 64151 114 Locate
trnW-CCA gene − 64277 64350 74 Locate
trnP-UGG gene − 64519 64592 74 Locate
psaJ gene + 64867 65001 135 Locate
rpl33 gene + 65480 65680 201 Locate
rps18 gene + 65827 66132 306 Locate
rpl20 gene − 66348 66734 387 Locate
rps12 gene − 67478 67591 114 Locate
clpP gene − 67716 69591 1876 Locate
psbB gene + 70034 71560 1527 Locate
psbT gene + 71752 71853 102 Locate
psbN gene − 71927 72058 132 Locate
psbH gene + 72162 72383 222 Locate
petB gene + 72508 73888 1381 Locate
petD gene + 74083 75292 1210 Locate
rpoA gene − 75455 76468 1014 Locate
rps11 gene − 76540 76956 417 Locate
rpl36 gene − 77059 77172 114 Locate
infA gene − 77268 77501 234 Locate
rps8 gene − 77624 78037 414 Locate
rpl14 gene − 78205 78573 369 Locate
rpl16 gene − 78700 80005 1306 Locate
rps3 gene − 80151 80813 663 Locate
rpl22 gene − 80798 81262 465 Locate
rps19 gene − 81326 81604 279 Locate
rpl2 gene − 81656 83147 1492 Locate
rpl23 gene − 83166 83447 282 Locate
trnM-CAU gene − 83621 83694 74 Locate
ycf2 gene + 83783 90643 6861 Locate
ycf15 gene + 90686 90934 249 Locate
trnL-CAA gene − 91196 91276 81 Locate
ndhB gene − 91821 94032 2212 Locate
rps7 gene − 94307 94774 468 Locate
rps12 gene − 94828 95621 794 Locate
trnV-GAC gene + 97241 97312 72 Locate
rrn16S gene + 97540 99030 1491 Locate
trnI-UUC gene + 99320 100323 1004 Locate
trnA-UGC gene + 100388 101266 879 Locate
rrn23S gene + 101458 104268 2811 Locate
rrn4.5S gene + 104367 104469 103 Locate
rrn5S gene + 104725 104845 121 Locate
trnR-ACG gene + 105080 105153 74 Locate
trnN-GUU gene − 105714 105785 72 Locate
ycf1 gene + 106111 107241 1131 Locate
ndhF gene − 107175 109403 2229 Locate
rpl32 gene + 109844 110020 177 Locate
trnL-UAG gene + 110717 110796 80 Locate
ccsA gene + 110884 111855 972 Locate
ndhD gene − 112037 113566 1530 Locate
psaC gene − 113661 113906 246 Locate
ndhE gene − 114158 114463 306 Locate
ndhG gene − 114673 115203 531 Locate
ndhI gene − 115562 116068 507 Locate
ndhA gene − 116148 118290 2143 Locate
ndhH gene − 118292 119473 1182 Locate
rps15 gene − 119574 119846 273 Locate
ycf1 gene − 120239 125764 5526 Locate
trnN-GUU gene + 126090 126161 72 Locate
trnR-ACG gene − 126722 126795 74 Locate
rrn5S gene − 127030 127150 121 Locate
rrn4.5S gene − 127406 127508 103 Locate
rrn23S gene − 127607 130417 2811 Locate
trnA-UGC gene − 130609 131487 879 Locate
trnI-UUC gene − 131552 132555 1004 Locate
rrn16S gene − 132845 134335 1491 Locate
trnV-GAC gene − 134563 134634 72 Locate
rps12 gene + 136254 137047 794 Locate
rps7 gene + 137101 137568 468 Locate
ndhB gene + 137843 140054 2212 Locate
trnL-CAA gene + 140599 140679 81 Locate
ycf15 gene − 140941 141189 249 Locate
ycf2 gene − 141232 148092 6861 Locate
trnM-CAU gene + 148181 148254 74 Locate
rpl23 gene + 148428 148709 282 Locate
rpl2 gene + 148728 150219 1492 Locate
rps19 gene + 150271 150312 42 Locate
Status Available
Accession PP272180.1
Length 150,312 bp
GC content 38.6%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources