Teucrium chamaedrys subsp. chamaedrys chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272183.1 · 2–76 bp · −
psbA · PP272183.1 · 487–1,545 bp · −
trnK-UUU · PP272183.1 · 1,781–4,384 bp · −
matK · PP272183.1 · 2,104–3,639 bp · −
rps16 · PP272183.1 · 5,077–6,197 bp · −
trnQ-UUG · PP272183.1 · 7,082–7,154 bp · −
trnS-GCU · PP272183.1 · 8,294–8,381 bp · −
atpA · PP272183.1 · 10,201–11,724 bp · −
atpF · PP272183.1 · 11,853–13,101 bp · −
atpH · PP272183.1 · 13,455–13,700 bp · −
atpI · PP272183.1 · 14,705–15,448 bp · −
rps2 · PP272183.1 · 15,720–16,430 bp · −
rpoC2 · PP272183.1 · 16,685–20,809 bp · −
rpoC1 · PP272183.1 · 20,977–23,819 bp · −
rpoB · PP272183.1 · 23,863–27,075 bp · −
psbM · PP272183.1 · 30,037–30,141 bp · −
trnD-GUC · PP272183.1 · 30,660–30,736 bp · −
trnY-GUA · PP272183.1 · 30,841–30,926 bp · −
trnE-UUC · PP272183.1 · 30,985–31,057 bp · −
trnS-UGA · PP272183.1 · 35,734–35,826 bp · −
trnM-CAU · PP272183.1 · 36,859–36,933 bp · −
rps14 · PP272183.1 · 37,078–37,380 bp · −
psaB · PP272183.1 · 37,502–39,706 bp · −
psaA · PP272183.1 · 39,732–41,984 bp · −
ycf3 · PP272183.1 · 42,696–44,648 bp · −
rps4 · PP272183.1 · 45,637–46,236 bp · −
trnT-UGU · PP272183.1 · 46,602–46,676 bp · −
ndhJ · PP272183.1 · 48,991–49,467 bp · −
ndhK · PP272183.1 · 49,573–50,250 bp · −
ndhC · PP272183.1 · 50,304–50,666 bp · −
trnV-UAC · PP272183.1 · 51,570–52,229 bp · −
atpE · PP272183.1 · 52,683–53,084 bp · −
atpB · PP272183.1 · 53,081–54,577 bp · −
psbJ · PP272183.1 · 63,588–63,710 bp · −
psbL · PP272183.1 · 63,852–63,968 bp · −
psbF · PP272183.1 · 63,992–64,111 bp · −
psbE · PP272183.1 · 64,126–64,377 bp · −
trnW-CCA · PP272183.1 · 65,798–65,871 bp · −
trnP-UGG · PP272183.1 · 66,035–66,110 bp · −
rpl20 · PP272183.1 · 67,921–68,307 bp · −
rps12 · PP272183.1 · 69,156–69,269 bp · −
rps12 · PP272183.1 · 95,197–95,993 bp · −
clpP1 · PP272183.1 · 69,428–71,369 bp · −
psbN · PP272183.1 · 73,701–73,832 bp · −
rpoA · PP272183.1 · 77,216–78,235 bp · −
rps11 · PP272183.1 · 78,311–78,727 bp · −
rpl36 · PP272183.1 · 78,829–78,942 bp · −
infA · PP272183.1 · 79,052–79,285 bp · −
rps8 · PP272183.1 · 79,410–79,814 bp · −
rpl14 · PP272183.1 · 79,989–80,357 bp · −
rpl16 · PP272183.1 · 80,484–81,750 bp · −
rps3 · PP272183.1 · 81,900–82,544 bp · −
rpl22 · PP272183.1 · 82,529–82,990 bp · −
rps19 · PP272183.1 · 83,050–83,328 bp · −
rpl2 · PP272183.1 · 83,382–84,875 bp · −
rpl23 · PP272183.1 · 84,894–85,175 bp · −
trnM-CAU · PP272183.1 · 85,340–85,414 bp · −
trnL-CAA · PP272183.1 · 91,570–91,652 bp · −
ndhB · PP272183.1 · 92,201–94,412 bp · −
rps7 · PP272183.1 · 94,676–95,143 bp · −
trnN-GUU · PP272183.1 · 106,108–106,181 bp · −
ndhF · PP272183.1 · 107,536–109,752 bp · −
ndhD · PP272183.1 · 112,227–113,729 bp · −
psaC · PP272183.1 · 113,843–114,088 bp · −
ndhE · PP272183.1 · 114,339–114,644 bp · −
ndhG · PP272183.1 · 114,815–115,345 bp · −
ndhI · PP272183.1 · 115,683–116,189 bp · −
ndhA · PP272183.1 · 116,270–118,443 bp · −
ndhH · PP272183.1 · 118,445–119,626 bp · −
rps15 · PP272183.1 · 119,723–119,995 bp · −
ycf1 · PP272183.1 · 120,386–125,590 bp · −
trnR-ACG · PP272183.1 · 126,572–126,646 bp · −
rrn5 · PP272183.1 · 126,891–127,011 bp · −
rrn4.5 · PP272183.1 · 127,272–127,374 bp · −
rrn23 · PP272183.1 · 127,473–130,291 bp · −
trnA-UGC · PP272183.1 · 130,453–131,332 bp · −
trnI · PP272183.1 · 131,397–132,418 bp · −
trnV-GAC · PP272183.1 · 134,434–134,505 bp · −
ycf15 · PP272183.1 · 140,804–141,052 bp · −
ycf2 · PP272183.1 · 141,152–146,518 bp · −
psbK · PP272183.1 · 7,492–7,683 bp · +
psbI · PP272183.1 · 8,071–8,181 bp · +
trnG-UCC · PP272183.1 · 9,063–9,837 bp · +
trnR-UCU · PP272183.1 · 10,019–10,090 bp · +
trnC-GCA · PP272183.1 · 28,255–28,325 bp · +
petN · PP272183.1 · 28,982–29,071 bp · +
trnT-GGU · PP272183.1 · 31,626–31,699 bp · +
psbD · PP272183.1 · 33,046–34,107 bp · +
psbC · PP272183.1 · 34,055–35,476 bp · +
psbZ · PP272183.1 · 36,152–36,340 bp · +
trnG-GCC · PP272183.1 · 36,610–36,681 bp · +
trnS-GGA · PP272183.1 · 45,259–45,345 bp · +
trnL-UAA · PP272183.1 · 47,362–47,935 bp · +
trnF-GAA · PP272183.1 · 48,246–48,319 bp · +
trnM-CAU · PP272183.1 · 52,411–52,483 bp · +
rbcL · PP272183.1 · 55,432–56,874 bp · +
accD · PP272183.1 · 57,520–58,659 bp · +
psaI · PP272183.1 · 59,126–59,236 bp · +
ycf4 · PP272183.1 · 59,661–60,215 bp · +
cemA · PP272183.1 · 60,885–61,574 bp · +
petA · PP272183.1 · 61,779–62,741 bp · +
petL · PP272183.1 · 65,292–65,387 bp · +
petG · PP272183.1 · 65,561–65,674 bp · +
psaJ · PP272183.1 · 66,394–66,528 bp · +
rpl33 · PP272183.1 · 67,003–67,203 bp · +
rps18 · PP272183.1 · 67,381–67,686 bp · +
rps12 · PP272183.1 · 136,119–136,915 bp · +
psbB · PP272183.1 · 71,822–73,348 bp · +
psbT · PP272183.1 · 73,526–73,633 bp · +
psbH · PP272183.1 · 73,938–74,150 bp · +
petB · PP272183.1 · 74,271–75,608 bp · +
petD · PP272183.1 · 75,809–77,039 bp · +
ycf2 · PP272183.1 · 85,594–90,960 bp · +
ycf15 · PP272183.1 · 91,060–91,308 bp · +
trnV-GAC · PP272183.1 · 97,607–97,678 bp · +
rrn16 · PP272183.1 · 97,905–99,395 bp · +
trnI · PP272183.1 · 99,694–100,715 bp · +
trnA-UGC · PP272183.1 · 100,780–101,659 bp · +
rrn23 · PP272183.1 · 101,821–104,639 bp · +
rrn4.5 · PP272183.1 · 104,738–104,840 bp · +
rrn5 · PP272183.1 · 105,101–105,221 bp · +
trnR-ACG · PP272183.1 · 105,466–105,540 bp · +
ycf1 · PP272183.1 · 106,522–107,559 bp · +
rpl32 · PP272183.1 · 110,245–110,421 bp · +
trnL-UAG · PP272183.1 · 110,861–110,940 bp · +
ccsA · PP272183.1 · 111,024–111,995 bp · +
trnN-GUU · PP272183.1 · 125,931–126,004 bp · +
rrn16 · PP272183.1 · 132,718–134,207 bp · +
rps7 · PP272183.1 · 136,969–137,436 bp · +
ndhB · PP272183.1 · 137,700–139,911 bp · +
trnL-CAA · PP272183.1 · 140,460–140,542 bp · +
trnM-CAU · PP272183.1 · 146,698–146,772 bp · +
rpl23 · PP272183.1 · 146,937–147,218 bp · +
rpl2 · PP272183.1 · 147,237–148,730 bp · +
rps19 · PP272183.1 · 148,784–149,062 bp · +
rpl22 · PP272183.1 · 149,122–149,583 bp · +
rps3 · PP272183.1 · 149,568–149,963 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Teucrium chamaedrys subsp. chamaedrys
ANNOTATED PLASTOME
PP272183.1
149,963 bp · 136 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37491 74982 112472 149963 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn16 rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19 rpl22 rps3
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
137 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 487 1545 1059 Locate
trnK-UUU gene − 1781 4384 2604 Locate
matK gene − 2104 3639 1536 Locate
rps16 gene − 5077 6197 1121 Locate
trnQ-UUG gene − 7082 7154 73 Locate
psbK gene + 7492 7683 192 Locate
psbI gene + 8071 8181 111 Locate
trnS-GCU gene − 8294 8381 88 Locate
trnG-UCC gene + 9063 9837 775 Locate
trnR-UCU gene + 10019 10090 72 Locate
atpA gene − 10201 11724 1524 Locate
atpF gene − 11853 13101 1249 Locate
atpH gene − 13455 13700 246 Locate
atpI gene − 14705 15448 744 Locate
rps2 gene − 15720 16430 711 Locate
rpoC2 gene − 16685 20809 4125 Locate
rpoC1 gene − 20977 23819 2843 Locate
rpoB gene − 23863 27075 3213 Locate
trnC-GCA gene + 28255 28325 71 Locate
petN gene + 28982 29071 90 Locate
psbM gene − 30037 30141 105 Locate
trnD-GUC gene − 30660 30736 77 Locate
trnY-GUA gene − 30841 30926 86 Locate
trnE-UUC gene − 30985 31057 73 Locate
trnT-GGU gene + 31626 31699 74 Locate
psbD gene + 33046 34107 1062 Locate
psbC gene + 34055 35476 1422 Locate
trnS-UGA gene − 35734 35826 93 Locate
psbZ gene + 36152 36340 189 Locate
trnG-GCC gene + 36610 36681 72 Locate
trnM-CAU gene − 36859 36933 75 Locate
rps14 gene − 37078 37380 303 Locate
psaB gene − 37502 39706 2205 Locate
psaA gene − 39732 41984 2253 Locate
ycf3 gene − 42696 44648 1953 Locate
trnS-GGA gene + 45259 45345 87 Locate
rps4 gene − 45637 46236 600 Locate
trnT-UGU gene − 46602 46676 75 Locate
trnL-UAA gene + 47362 47935 574 Locate
trnF-GAA gene + 48246 48319 74 Locate
ndhJ gene − 48991 49467 477 Locate
ndhK gene − 49573 50250 678 Locate
ndhC gene − 50304 50666 363 Locate
trnV-UAC gene − 51570 52229 660 Locate
trnM-CAU gene + 52411 52483 73 Locate
atpE gene − 52683 53084 402 Locate
atpB gene − 53081 54577 1497 Locate
rbcL gene + 55432 56874 1443 Locate
accD gene + 57520 58659 1140 Locate
psaI gene + 59126 59236 111 Locate
ycf4 gene + 59661 60215 555 Locate
cemA gene + 60885 61574 690 Locate
petA gene + 61779 62741 963 Locate
psbJ gene − 63588 63710 123 Locate
psbL gene − 63852 63968 117 Locate
psbF gene − 63992 64111 120 Locate
psbE gene − 64126 64377 252 Locate
petL gene + 65292 65387 96 Locate
petG gene + 65561 65674 114 Locate
trnW-CCA gene − 65798 65871 74 Locate
trnP-UGG gene − 66035 66110 76 Locate
psaJ gene + 66394 66528 135 Locate
rpl33 gene + 67003 67203 201 Locate
rps18 gene + 67381 67686 306 Locate
rpl20 gene − 67921 68307 387 Locate
rps12 gene − 69156 69269 114 Locate
clpP1 gene − 69428 71369 1942 Locate
psbB gene + 71822 73348 1527 Locate
psbT gene + 73526 73633 108 Locate
psbN gene − 73701 73832 132 Locate
psbH gene + 73938 74150 213 Locate
petB gene + 74271 75608 1338 Locate
petD gene + 75809 77039 1231 Locate
rpoA gene − 77216 78235 1020 Locate
rps11 gene − 78311 78727 417 Locate
rpl36 gene − 78829 78942 114 Locate
infA gene − 79052 79285 234 Locate
rps8 gene − 79410 79814 405 Locate
rpl14 gene − 79989 80357 369 Locate
rpl16 gene − 80484 81750 1267 Locate
rps3 gene − 81900 82544 645 Locate
rpl22 gene − 82529 82990 462 Locate
rps19 gene − 83050 83328 279 Locate
rpl2 gene − 83382 84875 1494 Locate
rpl23 gene − 84894 85175 282 Locate
trnM-CAU gene − 85340 85414 75 Locate
ycf2 gene + 85594 90960 5367 Locate
ycf15 gene + 91060 91308 249 Locate
trnL-CAA gene − 91570 91652 83 Locate
ndhB gene − 92201 94412 2212 Locate
rps7 gene − 94676 95143 468 Locate
rps12 gene − 95197 95993 797 Locate
trnV-GAC gene + 97607 97678 72 Locate
rrn16 gene + 97905 99395 1491 Locate
trnI gene + 99694 100715 1022 Locate
trnA-UGC gene + 100780 101659 880 Locate
rrn23 gene + 101821 104639 2819 Locate
rrn4.5 gene + 104738 104840 103 Locate
rrn5 gene + 105101 105221 121 Locate
trnR-ACG gene + 105466 105540 75 Locate
trnN-GUU gene − 106108 106181 74 Locate
ycf1 gene + 106522 107559 1038 Locate
ndhF gene − 107536 109752 2217 Locate
rpl32 gene + 110245 110421 177 Locate
trnL-UAG gene + 110861 110940 80 Locate
ccsA gene + 111024 111995 972 Locate
ndhD gene − 112227 113729 1503 Locate
psaC gene − 113843 114088 246 Locate
ndhE gene − 114339 114644 306 Locate
ndhG gene − 114815 115345 531 Locate
ndhI gene − 115683 116189 507 Locate
ndhA gene − 116270 118443 2174 Locate
ndhH gene − 118445 119626 1182 Locate
rps15 gene − 119723 119995 273 Locate
ycf1 gene − 120386 125590 5205 Locate
trnN-GUU gene + 125931 126004 74 Locate
trnR-ACG gene − 126572 126646 75 Locate
rrn5 gene − 126891 127011 121 Locate
rrn4.5 gene − 127272 127374 103 Locate
rrn23 gene − 127473 130291 2819 Locate
trnA-UGC gene − 130453 131332 880 Locate
trnI gene − 131397 132418 1022 Locate
rrn16 gene + 132718 134207 1490 Locate
trnV-GAC gene − 134434 134505 72 Locate
rps12 gene + 136119 136915 797 Locate
rps7 gene + 136969 137436 468 Locate
ndhB gene + 137700 139911 2212 Locate
trnL-CAA gene + 140460 140542 83 Locate
ycf15 gene − 140804 141052 249 Locate
ycf2 gene − 141152 146518 5367 Locate
trnM-CAU gene + 146698 146772 75 Locate
rpl23 gene + 146937 147218 282 Locate
rpl2 gene + 147237 148730 1494 Locate
rps19 gene + 148784 149062 279 Locate
rpl22 gene + 149122 149583 462 Locate
rps3 gene + 149568 149963 396 Locate
Status Available
Accession PP272183.1
Length 149,963 bp
GC content 38.1%
Annotated genes 136
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 29 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources