Thymbra capitata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_086488.1 · 4–78 bp · −
psbA · NC_086488.1 · 382–1,440 bp · −
trnK-UUU · NC_086488.1 · 1,661–4,208 bp · −
matK · NC_086488.1 · 1,941–3,470 bp · −
rps16 · NC_086488.1 · 4,760–5,898 bp · −
trnQ-UUG · NC_086488.1 · 6,833–6,904 bp · −
trnS-GCU · NC_086488.1 · 8,129–8,216 bp · −
atpA · NC_086488.1 · 10,010–11,533 bp · −
atpF · NC_086488.1 · 11,629–12,884 bp · −
atpH · NC_086488.1 · 13,164–13,409 bp · −
atpI · NC_086488.1 · 14,420–15,163 bp · −
rps2 · NC_086488.1 · 15,386–16,096 bp · −
rpoC2 · NC_086488.1 · 16,316–20,503 bp · −
rpoC1 · NC_086488.1 · 20,676–23,487 bp · −
rpoB · NC_086488.1 · 23,514–26,726 bp · −
psbM · NC_086488.1 · 29,156–29,260 bp · −
trnD-GUC · NC_086488.1 · 29,769–29,842 bp · −
trnY-GUA · NC_086488.1 · 29,953–30,036 bp · −
trnE-UUC · NC_086488.1 · 30,116–30,188 bp · −
trnS-UGA · NC_086488.1 · 34,823–34,915 bp · −
trnfM-CAU · NC_086488.1 · 35,949–36,022 bp · −
rps14 · NC_086488.1 · 36,178–36,480 bp · −
psaB · NC_086488.1 · 36,603–38,807 bp · −
psaA · NC_086488.1 · 38,833–41,085 bp · −
pafI · NC_086488.1 · 41,874–43,811 bp · −
rps4 · NC_086488.1 · 44,612–45,217 bp · −
trnT-UGU · NC_086488.1 · 45,602–45,674 bp · −
ndhJ · NC_086488.1 · 47,912–48,388 bp · −
ndhK · NC_086488.1 · 48,499–49,176 bp · −
ndhC · NC_086488.1 · 49,228–49,590 bp · −
trnV-UAC · NC_086488.1 · 50,537–51,182 bp · −
atpE · NC_086488.1 · 51,630–52,031 bp · −
atpB · NC_086488.1 · 52,028–53,518 bp · −
psbJ · NC_086488.1 · 63,028–63,150 bp · −
psbL · NC_086488.1 · 63,285–63,401 bp · −
psbF · NC_086488.1 · 63,425–63,544 bp · −
psbE · NC_086488.1 · 63,559–63,810 bp · −
trnW-CCA · NC_086488.1 · 65,184–65,257 bp · −
trnP-UGG · NC_086488.1 · 65,431–65,504 bp · −
rpl20 · NC_086488.1 · 67,275–67,661 bp · −
rps12 · NC_086488.1 · 68,520–68,633 bp · −
rps12 · NC_086488.1 · 95,839–96,622 bp · −
clpP1 · NC_086488.1 · 68,758–70,663 bp · −
pbf1 · NC_086488.1 · 72,998–73,129 bp · −
rpoA · NC_086488.1 · 76,517–77,524 bp · −
rps11 · NC_086488.1 · 77,596–78,012 bp · −
rpl36 · NC_086488.1 · 78,122–78,235 bp · −
infA · NC_086488.1 · 78,331–78,564 bp · −
rps8 · NC_086488.1 · 78,690–79,094 bp · −
rpl14 · NC_086488.1 · 79,262–79,630 bp · −
rpl16 · NC_086488.1 · 79,762–81,041 bp · −
rps3 · NC_086488.1 · 81,186–81,848 bp · −
rpl22 · NC_086488.1 · 81,850–82,305 bp · −
rps19 · NC_086488.1 · 82,375–82,653 bp · −
rpl2 · NC_086488.1 · 82,712–84,201 bp · −
rpl23 · NC_086488.1 · 84,220–84,501 bp · −
trnI-CAU · NC_086488.1 · 84,667–84,740 bp · −
trnL-CAA · NC_086488.1 · 92,204–92,284 bp · −
ndhB · NC_086488.1 · 92,845–95,052 bp · −
rps7 · NC_086488.1 · 95,318–95,785 bp · −
trnN-GUU · NC_086488.1 · 106,723–106,794 bp · −
ndhF · NC_086488.1 · 108,148–110,379 bp · −
ndhD · NC_086488.1 · 113,137–114,447 bp · −
psaC · NC_086488.1 · 114,765–115,010 bp · −
ndhE · NC_086488.1 · 115,251–115,556 bp · −
ndhG · NC_086488.1 · 115,780–116,310 bp · −
ndhI · NC_086488.1 · 116,687–117,193 bp · −
ndhA · NC_086488.1 · 117,274–119,369 bp · −
ndhH · NC_086488.1 · 119,371–120,552 bp · −
rps15 · NC_086488.1 · 120,652–120,924 bp · −
ycf1 · NC_086488.1 · 121,351–126,906 bp · −
trnR-ACG · NC_086488.1 · 127,832–127,905 bp · −
rrn5 · NC_086488.1 · 128,149–128,269 bp · −
rrn4.5 · NC_086488.1 · 128,526–128,628 bp · −
rrn23 · NC_086488.1 · 128,727–131,537 bp · −
trnA-UGC · NC_086488.1 · 131,715–132,592 bp · −
trnI-GAU · NC_086488.1 · 132,662–133,684 bp · −
rrn16 · NC_086488.1 · 133,983–135,473 bp · −
trnV-GAC · NC_086488.1 · 135,700–135,771 bp · −
ycf15 · NC_086488.1 · 142,077–142,340 bp · −
ycf2 · NC_086488.1 · 142,416–149,201 bp · −
psbK · NC_086488.1 · 7,291–7,476 bp · +
psbI · NC_086488.1 · 7,865–7,975 bp · +
trnG-UCC · NC_086488.1 · 8,898–9,652 bp · +
trnR-UCU · NC_086488.1 · 9,834–9,905 bp · +
trnC-GCA · NC_086488.1 · 27,862–27,932 bp · +
petN · NC_086488.1 · 28,094–28,183 bp · +
trnT-GGU · NC_086488.1 · 30,747–30,818 bp · +
psbD · NC_086488.1 · 32,150–33,211 bp · +
psbC · NC_086488.1 · 33,195–34,580 bp · +
psbZ · NC_086488.1 · 35,255–35,443 bp · +
trnG-GCC · NC_086488.1 · 35,717–35,787 bp · +
trnS-GGA · NC_086488.1 · 44,252–44,338 bp · +
trnL-UAA · NC_086488.1 · 46,330–46,908 bp · +
trnF-GAA · NC_086488.1 · 47,201–47,273 bp · +
trnM-CAU · NC_086488.1 · 51,363–51,435 bp · +
rbcL · NC_086488.1 · 54,316–55,749 bp · +
accD · NC_086488.1 · 56,441–57,922 bp · +
psaI · NC_086488.1 · 58,386–58,496 bp · +
pafII · NC_086488.1 · 58,950–59,504 bp · +
cemA · NC_086488.1 · 60,142–60,831 bp · +
petA · NC_086488.1 · 61,045–62,007 bp · +
petL · NC_086488.1 · 64,690–64,785 bp · +
petG · NC_086488.1 · 64,956–65,069 bp · +
psaJ · NC_086488.1 · 65,777–65,911 bp · +
rpl33 · NC_086488.1 · 66,362–66,565 bp · +
rps18 · NC_086488.1 · 66,736–67,041 bp · +
psbB · NC_086488.1 · 71,115–72,641 bp · +
psbT · NC_086488.1 · 72,833–72,934 bp · +
psbH · NC_086488.1 · 73,235–73,456 bp · +
petB · NC_086488.1 · 73,582–74,962 bp · +
petD · NC_086488.1 · 75,150–76,334 bp · +
ycf2 · NC_086488.1 · 84,829–91,614 bp · +
ycf15 · NC_086488.1 · 91,690–91,953 bp · +
trnV-GAC · NC_086488.1 · 98,259–98,330 bp · +
rrn16 · NC_086488.1 · 98,557–100,047 bp · +
trnI-GAU · NC_086488.1 · 100,346–101,368 bp · +
trnA-UGC · NC_086488.1 · 101,438–102,315 bp · +
rrn23 · NC_086488.1 · 102,493–105,303 bp · +
rrn4.5 · NC_086488.1 · 105,402–105,504 bp · +
rrn5 · NC_086488.1 · 105,761–105,881 bp · +
trnR-ACG · NC_086488.1 · 106,125–106,198 bp · +
ycf1 · NC_086488.1 · 107,124–108,254 bp · +
rpl32 · NC_086488.1 · 110,847–111,017 bp · +
trnL-UAG · NC_086488.1 · 111,740–111,819 bp · +
ccsA · NC_086488.1 · 111,920–112,897 bp · +
trnN-GUU · NC_086488.1 · 127,236–127,307 bp · +
rps7 · NC_086488.1 · 138,245–138,712 bp · +
ndhB · NC_086488.1 · 138,978–141,185 bp · +
trnL-CAA · NC_086488.1 · 141,746–141,826 bp · +
trnI-CAU · NC_086488.1 · 149,290–149,363 bp · +
rpl23 · NC_086488.1 · 149,529–149,810 bp · +
rpl2 · NC_086488.1 · 149,829–151,318 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymbra capitata
ANNOTATED PLASTOME
NC_086488.1
151,475 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37869 75738 113606 151475 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 382 1440 1059 Locate
trnK-UUU gene − 1661 4208 2548 Locate
matK gene − 1941 3470 1530 Locate
rps16 gene − 4760 5898 1139 Locate
trnQ-UUG gene − 6833 6904 72 Locate
psbK gene + 7291 7476 186 Locate
psbI gene + 7865 7975 111 Locate
trnS-GCU gene − 8129 8216 88 Locate
trnG-UCC gene + 8898 9652 755 Locate
trnR-UCU gene + 9834 9905 72 Locate
atpA gene − 10010 11533 1524 Locate
atpF gene − 11629 12884 1256 Locate
atpH gene − 13164 13409 246 Locate
atpI gene − 14420 15163 744 Locate
rps2 gene − 15386 16096 711 Locate
rpoC2 gene − 16316 20503 4188 Locate
rpoC1 gene − 20676 23487 2812 Locate
rpoB gene − 23514 26726 3213 Locate
trnC-GCA gene + 27862 27932 71 Locate
petN gene + 28094 28183 90 Locate
psbM gene − 29156 29260 105 Locate
trnD-GUC gene − 29769 29842 74 Locate
trnY-GUA gene − 29953 30036 84 Locate
trnE-UUC gene − 30116 30188 73 Locate
trnT-GGU gene + 30747 30818 72 Locate
psbD gene + 32150 33211 1062 Locate
psbC gene + 33195 34580 1386 Locate
trnS-UGA gene − 34823 34915 93 Locate
psbZ gene + 35255 35443 189 Locate
trnG-GCC gene + 35717 35787 71 Locate
trnfM-CAU gene − 35949 36022 74 Locate
rps14 gene − 36178 36480 303 Locate
psaB gene − 36603 38807 2205 Locate
psaA gene − 38833 41085 2253 Locate
pafI gene − 41874 43811 1938 Locate
trnS-GGA gene + 44252 44338 87 Locate
rps4 gene − 44612 45217 606 Locate
trnT-UGU gene − 45602 45674 73 Locate
trnL-UAA gene + 46330 46908 579 Locate
trnF-GAA gene + 47201 47273 73 Locate
ndhJ gene − 47912 48388 477 Locate
ndhK gene − 48499 49176 678 Locate
ndhC gene − 49228 49590 363 Locate
trnV-UAC gene − 50537 51182 646 Locate
trnM-CAU gene + 51363 51435 73 Locate
atpE gene − 51630 52031 402 Locate
atpB gene − 52028 53518 1491 Locate
rbcL gene + 54316 55749 1434 Locate
accD gene + 56441 57922 1482 Locate
psaI gene + 58386 58496 111 Locate
pafII gene + 58950 59504 555 Locate
cemA gene + 60142 60831 690 Locate
petA gene + 61045 62007 963 Locate
psbJ gene − 63028 63150 123 Locate
psbL gene − 63285 63401 117 Locate
psbF gene − 63425 63544 120 Locate
psbE gene − 63559 63810 252 Locate
petL gene + 64690 64785 96 Locate
petG gene + 64956 65069 114 Locate
trnW-CCA gene − 65184 65257 74 Locate
trnP-UGG gene − 65431 65504 74 Locate
psaJ gene + 65777 65911 135 Locate
rpl33 gene + 66362 66565 204 Locate
rps18 gene + 66736 67041 306 Locate
rpl20 gene − 67275 67661 387 Locate
rps12 gene − 68520 68633 114 Locate
clpP1 gene − 68758 70663 1906 Locate
psbB gene + 71115 72641 1527 Locate
psbT gene + 72833 72934 102 Locate
pbf1 gene − 72998 73129 132 Locate
psbH gene + 73235 73456 222 Locate
petB gene + 73582 74962 1381 Locate
petD gene + 75150 76334 1185 Locate
rpoA gene − 76517 77524 1008 Locate
rps11 gene − 77596 78012 417 Locate
rpl36 gene − 78122 78235 114 Locate
infA gene − 78331 78564 234 Locate
rps8 gene − 78690 79094 405 Locate
rpl14 gene − 79262 79630 369 Locate
rpl16 gene − 79762 81041 1280 Locate
rps3 gene − 81186 81848 663 Locate
rpl22 gene − 81850 82305 456 Locate
rps19 gene − 82375 82653 279 Locate
rpl2 gene − 82712 84201 1490 Locate
rpl23 gene − 84220 84501 282 Locate
trnI-CAU gene − 84667 84740 74 Locate
ycf2 gene + 84829 91614 6786 Locate
ycf15 gene + 91690 91953 264 Locate
trnL-CAA gene − 92204 92284 81 Locate
ndhB gene − 92845 95052 2208 Locate
rps7 gene − 95318 95785 468 Locate
rps12 gene − 95839 96622 784 Locate
trnV-GAC gene + 98259 98330 72 Locate
rrn16 gene + 98557 100047 1491 Locate
trnI-GAU gene + 100346 101368 1023 Locate
trnA-UGC gene + 101438 102315 878 Locate
rrn23 gene + 102493 105303 2811 Locate
rrn4.5 gene + 105402 105504 103 Locate
rrn5 gene + 105761 105881 121 Locate
trnR-ACG gene + 106125 106198 74 Locate
trnN-GUU gene − 106723 106794 72 Locate
ycf1 gene + 107124 108254 1131 Locate
ndhF gene − 108148 110379 2232 Locate
rpl32 gene + 110847 111017 171 Locate
trnL-UAG gene + 111740 111819 80 Locate
ccsA gene + 111920 112897 978 Locate
ndhD gene − 113137 114447 1311 Locate
psaC gene − 114765 115010 246 Locate
ndhE gene − 115251 115556 306 Locate
ndhG gene − 115780 116310 531 Locate
ndhI gene − 116687 117193 507 Locate
ndhA gene − 117274 119369 2096 Locate
ndhH gene − 119371 120552 1182 Locate
rps15 gene − 120652 120924 273 Locate
ycf1 gene − 121351 126906 5556 Locate
trnN-GUU gene + 127236 127307 72 Locate
trnR-ACG gene − 127832 127905 74 Locate
rrn5 gene − 128149 128269 121 Locate
rrn4.5 gene − 128526 128628 103 Locate
rrn23 gene − 128727 131537 2811 Locate
trnA-UGC gene − 131715 132592 878 Locate
trnI-GAU gene − 132662 133684 1023 Locate
rrn16 gene − 133983 135473 1491 Locate
trnV-GAC gene − 135700 135771 72 Locate
rps7 gene + 138245 138712 468 Locate
ndhB gene + 138978 141185 2208 Locate
trnL-CAA gene + 141746 141826 81 Locate
ycf15 gene − 142077 142340 264 Locate
ycf2 gene − 142416 149201 6786 Locate
trnI-CAU gene + 149290 149363 74 Locate
rpl23 gene + 149529 149810 282 Locate
rpl2 gene + 149829 151318 1490 Locate
Status Available
Accession NC_086488.1
Length 151,475 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources