Thymus mastichina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_086485.1 · 11–85 bp · −
psbA · NC_086485.1 · 413–1,471 bp · −
trnK-UUU · NC_086485.1 · 1,692–4,232 bp · −
matK · NC_086485.1 · 1,972–3,495 bp · −
rps16 · NC_086485.1 · 4,777–5,921 bp · −
trnQ-UUG · NC_086485.1 · 6,843–6,914 bp · −
trnS-GCU · NC_086485.1 · 8,135–8,222 bp · −
atpA · NC_086485.1 · 10,028–11,551 bp · −
atpF · NC_086485.1 · 11,645–12,910 bp · −
atpH · NC_086485.1 · 13,196–13,441 bp · −
atpI · NC_086485.1 · 14,494–15,237 bp · −
rps2 · NC_086485.1 · 15,461–16,171 bp · −
rpoC2 · NC_086485.1 · 16,390–20,571 bp · −
rpoC1 · NC_086485.1 · 20,733–23,537 bp · −
rpoB · NC_086485.1 · 23,564–26,776 bp · −
psbM · NC_086485.1 · 29,198–29,302 bp · −
trnD-GUC · NC_086485.1 · 29,820–29,893 bp · −
trnY-GUA · NC_086485.1 · 30,004–30,087 bp · −
trnE-UUC · NC_086485.1 · 30,167–30,239 bp · −
trnS-UGA · NC_086485.1 · 34,896–34,988 bp · −
trnfM-CAU · NC_086485.1 · 36,025–36,098 bp · −
rps14 · NC_086485.1 · 36,243–36,545 bp · −
psaB · NC_086485.1 · 36,668–38,872 bp · −
psaA · NC_086485.1 · 38,898–41,150 bp · −
pafI · NC_086485.1 · 41,916–43,843 bp · −
rps4 · NC_086485.1 · 45,060–45,665 bp · −
trnT-UGU · NC_086485.1 · 46,049–46,121 bp · −
ndhJ · NC_086485.1 · 48,341–48,817 bp · −
ndhK · NC_086485.1 · 48,928–49,605 bp · −
ndhC · NC_086485.1 · 49,657–50,019 bp · −
trnV-UAC · NC_086485.1 · 50,982–51,625 bp · −
atpE · NC_086485.1 · 52,074–52,475 bp · −
atpB · NC_086485.1 · 52,472–53,962 bp · −
psbJ · NC_086485.1 · 63,434–63,556 bp · −
psbL · NC_086485.1 · 63,691–63,807 bp · −
psbF · NC_086485.1 · 63,831–63,950 bp · −
psbE · NC_086485.1 · 63,965–64,216 bp · −
trnW-CCA · NC_086485.1 · 65,594–65,667 bp · −
trnP-UGG · NC_086485.1 · 65,841–65,914 bp · −
rpl20 · NC_086485.1 · 67,679–68,065 bp · −
rps12 · NC_086485.1 · 68,877–68,990 bp · −
rps12 · NC_086485.1 · 96,163–96,956 bp · −
clpP1 · NC_086485.1 · 69,114–71,020 bp · −
pbf1 · NC_086485.1 · 73,343–73,474 bp · −
rpoA · NC_086485.1 · 76,863–77,870 bp · −
rps11 · NC_086485.1 · 77,943–78,359 bp · −
rpl36 · NC_086485.1 · 78,469–78,582 bp · −
infA · NC_086485.1 · 78,646–78,879 bp · −
rps8 · NC_086485.1 · 79,006–79,410 bp · −
rpl14 · NC_086485.1 · 79,581–79,949 bp · −
rpl16 · NC_086485.1 · 80,081–81,354 bp · −
rps3 · NC_086485.1 · 81,499–82,161 bp · −
rpl22 · NC_086485.1 · 82,146–82,613 bp · −
rps19 · NC_086485.1 · 82,683–82,961 bp · −
rpl2 · NC_086485.1 · 83,021–84,508 bp · −
rpl23 · NC_086485.1 · 84,527–84,808 bp · −
trnI-CAU · NC_086485.1 · 84,974–85,047 bp · −
trnL-CAA · NC_086485.1 · 92,528–92,608 bp · −
ndhB · NC_086485.1 · 93,169–95,376 bp · −
rps7 · NC_086485.1 · 95,642–96,109 bp · −
trnN-GUU · NC_086485.1 · 107,042–107,113 bp · −
ndhF · NC_086485.1 · 108,467–110,698 bp · −
ndhD · NC_086485.1 · 113,445–114,833 bp · −
psaC · NC_086485.1 · 115,072–115,317 bp · −
ndhE · NC_086485.1 · 115,552–115,857 bp · −
ndhG · NC_086485.1 · 116,081–116,611 bp · −
ndhI · NC_086485.1 · 117,000–117,506 bp · −
ndhA · NC_086485.1 · 117,582–119,673 bp · −
ndhH · NC_086485.1 · 119,675–120,856 bp · −
rps15 · NC_086485.1 · 120,956–121,228 bp · −
ycf1 · NC_086485.1 · 121,649–127,198 bp · −
trnR-ACG · NC_086485.1 · 128,124–128,197 bp · −
rrn5 · NC_086485.1 · 128,441–128,561 bp · −
rrn4.5 · NC_086485.1 · 128,822–128,924 bp · −
rrn23 · NC_086485.1 · 129,023–131,833 bp · −
trnA-UGC · NC_086485.1 · 131,999–132,876 bp · −
trnI-GAU · NC_086485.1 · 132,946–133,966 bp · −
rrn16 · NC_086485.1 · 134,265–135,755 bp · −
trnV-GAC · NC_086485.1 · 135,982–136,053 bp · −
ycf15 · NC_086485.1 · 142,369–142,617 bp · −
ycf2 · NC_086485.1 · 142,708–149,505 bp · −
psbK · NC_086485.1 · 7,295–7,480 bp · +
psbI · NC_086485.1 · 7,874–7,984 bp · +
trnG-UCC · NC_086485.1 · 8,912–9,668 bp · +
trnR-UCU · NC_086485.1 · 9,849–9,920 bp · +
trnC-GCA · NC_086485.1 · 27,899–27,969 bp · +
petN · NC_086485.1 · 28,130–28,219 bp · +
trnT-GGU · NC_086485.1 · 30,800–30,871 bp · +
psbD · NC_086485.1 · 32,218–33,279 bp · +
psbC · NC_086485.1 · 33,263–34,648 bp · +
psbZ · NC_086485.1 · 35,332–35,520 bp · +
trnG-GCC · NC_086485.1 · 35,792–35,862 bp · +
trnS-GGA · NC_086485.1 · 44,686–44,772 bp · +
trnL-UAA · NC_086485.1 · 46,786–47,340 bp · +
trnF-GAA · NC_086485.1 · 47,633–47,705 bp · +
trnM-CAU · NC_086485.1 · 51,806–51,878 bp · +
rbcL · NC_086485.1 · 54,756–56,189 bp · +
accD · NC_086485.1 · 56,879–58,360 bp · +
psaI · NC_086485.1 · 58,823–58,933 bp · +
pafII · NC_086485.1 · 59,381–59,935 bp · +
cemA · NC_086485.1 · 60,581–61,270 bp · +
petA · NC_086485.1 · 61,480–62,442 bp · +
petL · NC_086485.1 · 65,094–65,189 bp · +
petG · NC_086485.1 · 65,360–65,473 bp · +
psaJ · NC_086485.1 · 66,194–66,328 bp · +
rpl33 · NC_086485.1 · 66,765–66,968 bp · +
rps18 · NC_086485.1 · 67,142–67,447 bp · +
psbB · NC_086485.1 · 71,472–72,998 bp · +
psbT · NC_086485.1 · 73,173–73,274 bp · +
psbH · NC_086485.1 · 73,580–73,801 bp · +
petB · NC_086485.1 · 73,927–75,304 bp · +
petD · NC_086485.1 · 75,502–76,680 bp · +
ycf2 · NC_086485.1 · 85,136–91,933 bp · +
ycf15 · NC_086485.1 · 92,024–92,272 bp · +
trnV-GAC · NC_086485.1 · 98,588–98,659 bp · +
rrn16 · NC_086485.1 · 98,886–100,376 bp · +
trnI-GAU · NC_086485.1 · 100,675–101,695 bp · +
trnA-UGC · NC_086485.1 · 101,765–102,642 bp · +
rrn23 · NC_086485.1 · 102,808–105,618 bp · +
rrn4.5 · NC_086485.1 · 105,717–105,819 bp · +
rrn5 · NC_086485.1 · 106,080–106,200 bp · +
trnR-ACG · NC_086485.1 · 106,444–106,517 bp · +
ycf1 · NC_086485.1 · 107,443–108,573 bp · +
rpl32 · NC_086485.1 · 111,156–111,326 bp · +
trnL-UAG · NC_086485.1 · 112,040–112,119 bp · +
ccsA · NC_086485.1 · 112,217–113,194 bp · +
trnN-GUU · NC_086485.1 · 127,528–127,599 bp · +
rps7 · NC_086485.1 · 138,532–138,999 bp · +
ndhB · NC_086485.1 · 139,265–141,472 bp · +
trnL-CAA · NC_086485.1 · 142,033–142,113 bp · +
trnI-CAU · NC_086485.1 · 149,594–149,667 bp · +
rpl23 · NC_086485.1 · 149,833–150,114 bp · +
rpl2 · NC_086485.1 · 150,133–151,620 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus mastichina
ANNOTATED PLASTOME
NC_086485.1
151,722 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37930 75861 113792 151722 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 413 1471 1059 Locate
trnK-UUU gene − 1692 4232 2541 Locate
matK gene − 1972 3495 1524 Locate
rps16 gene − 4777 5921 1145 Locate
trnQ-UUG gene − 6843 6914 72 Locate
psbK gene + 7295 7480 186 Locate
psbI gene + 7874 7984 111 Locate
trnS-GCU gene − 8135 8222 88 Locate
trnG-UCC gene + 8912 9668 757 Locate
trnR-UCU gene + 9849 9920 72 Locate
atpA gene − 10028 11551 1524 Locate
atpF gene − 11645 12910 1266 Locate
atpH gene − 13196 13441 246 Locate
atpI gene − 14494 15237 744 Locate
rps2 gene − 15461 16171 711 Locate
rpoC2 gene − 16390 20571 4182 Locate
rpoC1 gene − 20733 23537 2805 Locate
rpoB gene − 23564 26776 3213 Locate
trnC-GCA gene + 27899 27969 71 Locate
petN gene + 28130 28219 90 Locate
psbM gene − 29198 29302 105 Locate
trnD-GUC gene − 29820 29893 74 Locate
trnY-GUA gene − 30004 30087 84 Locate
trnE-UUC gene − 30167 30239 73 Locate
trnT-GGU gene + 30800 30871 72 Locate
psbD gene + 32218 33279 1062 Locate
psbC gene + 33263 34648 1386 Locate
trnS-UGA gene − 34896 34988 93 Locate
psbZ gene + 35332 35520 189 Locate
trnG-GCC gene + 35792 35862 71 Locate
trnfM-CAU gene − 36025 36098 74 Locate
rps14 gene − 36243 36545 303 Locate
psaB gene − 36668 38872 2205 Locate
psaA gene − 38898 41150 2253 Locate
pafI gene − 41916 43843 1928 Locate
trnS-GGA gene + 44686 44772 87 Locate
rps4 gene − 45060 45665 606 Locate
trnT-UGU gene − 46049 46121 73 Locate
trnL-UAA gene + 46786 47340 555 Locate
trnF-GAA gene + 47633 47705 73 Locate
ndhJ gene − 48341 48817 477 Locate
ndhK gene − 48928 49605 678 Locate
ndhC gene − 49657 50019 363 Locate
trnV-UAC gene − 50982 51625 644 Locate
trnM-CAU gene + 51806 51878 73 Locate
atpE gene − 52074 52475 402 Locate
atpB gene − 52472 53962 1491 Locate
rbcL gene + 54756 56189 1434 Locate
accD gene + 56879 58360 1482 Locate
psaI gene + 58823 58933 111 Locate
pafII gene + 59381 59935 555 Locate
cemA gene + 60581 61270 690 Locate
petA gene + 61480 62442 963 Locate
psbJ gene − 63434 63556 123 Locate
psbL gene − 63691 63807 117 Locate
psbF gene − 63831 63950 120 Locate
psbE gene − 63965 64216 252 Locate
petL gene + 65094 65189 96 Locate
petG gene + 65360 65473 114 Locate
trnW-CCA gene − 65594 65667 74 Locate
trnP-UGG gene − 65841 65914 74 Locate
psaJ gene + 66194 66328 135 Locate
rpl33 gene + 66765 66968 204 Locate
rps18 gene + 67142 67447 306 Locate
rpl20 gene − 67679 68065 387 Locate
rps12 gene − 68877 68990 114 Locate
clpP1 gene − 69114 71020 1907 Locate
psbB gene + 71472 72998 1527 Locate
psbT gene + 73173 73274 102 Locate
pbf1 gene − 73343 73474 132 Locate
psbH gene + 73580 73801 222 Locate
petB gene + 73927 75304 1378 Locate
petD gene + 75502 76680 1179 Locate
rpoA gene − 76863 77870 1008 Locate
rps11 gene − 77943 78359 417 Locate
rpl36 gene − 78469 78582 114 Locate
infA gene − 78646 78879 234 Locate
rps8 gene − 79006 79410 405 Locate
rpl14 gene − 79581 79949 369 Locate
rpl16 gene − 80081 81354 1274 Locate
rps3 gene − 81499 82161 663 Locate
rpl22 gene − 82146 82613 468 Locate
rps19 gene − 82683 82961 279 Locate
rpl2 gene − 83021 84508 1488 Locate
rpl23 gene − 84527 84808 282 Locate
trnI-CAU gene − 84974 85047 74 Locate
ycf2 gene + 85136 91933 6798 Locate
ycf15 gene + 92024 92272 249 Locate
trnL-CAA gene − 92528 92608 81 Locate
ndhB gene − 93169 95376 2208 Locate
rps7 gene − 95642 96109 468 Locate
rps12 gene − 96163 96956 794 Locate
trnV-GAC gene + 98588 98659 72 Locate
rrn16 gene + 98886 100376 1491 Locate
trnI-GAU gene + 100675 101695 1021 Locate
trnA-UGC gene + 101765 102642 878 Locate
rrn23 gene + 102808 105618 2811 Locate
rrn4.5 gene + 105717 105819 103 Locate
rrn5 gene + 106080 106200 121 Locate
trnR-ACG gene + 106444 106517 74 Locate
trnN-GUU gene − 107042 107113 72 Locate
ycf1 gene + 107443 108573 1131 Locate
ndhF gene − 108467 110698 2232 Locate
rpl32 gene + 111156 111326 171 Locate
trnL-UAG gene + 112040 112119 80 Locate
ccsA gene + 112217 113194 978 Locate
ndhD gene − 113445 114833 1389 Locate
psaC gene − 115072 115317 246 Locate
ndhE gene − 115552 115857 306 Locate
ndhG gene − 116081 116611 531 Locate
ndhI gene − 117000 117506 507 Locate
ndhA gene − 117582 119673 2092 Locate
ndhH gene − 119675 120856 1182 Locate
rps15 gene − 120956 121228 273 Locate
ycf1 gene − 121649 127198 5550 Locate
trnN-GUU gene + 127528 127599 72 Locate
trnR-ACG gene − 128124 128197 74 Locate
rrn5 gene − 128441 128561 121 Locate
rrn4.5 gene − 128822 128924 103 Locate
rrn23 gene − 129023 131833 2811 Locate
trnA-UGC gene − 131999 132876 878 Locate
trnI-GAU gene − 132946 133966 1021 Locate
rrn16 gene − 134265 135755 1491 Locate
trnV-GAC gene − 135982 136053 72 Locate
rps7 gene + 138532 138999 468 Locate
ndhB gene + 139265 141472 2208 Locate
trnL-CAA gene + 142033 142113 81 Locate
ycf15 gene − 142369 142617 249 Locate
ycf2 gene − 142708 149505 6798 Locate
trnI-CAU gene + 149594 149667 74 Locate
rpl23 gene + 149833 150114 282 Locate
rpl2 gene + 150133 151620 1488 Locate
Status Available
Accession NC_086485.1
Length 151,722 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources