Thymus villosus subsp. lusitanicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON641262.1 · 11–85 bp · −
psbA · ON641262.1 · 408–1,466 bp · −
trnK-UUU · ON641262.1 · 1,687–4,227 bp · −
matK · ON641262.1 · 1,967–3,490 bp · −
rps16 · ON641262.1 · 4,779–5,923 bp · −
trnQ-UUG · ON641262.1 · 6,837–6,908 bp · −
trnS-GCU · ON641262.1 · 8,180–8,267 bp · −
atpA · ON641262.1 · 10,121–11,644 bp · −
atpF · ON641262.1 · 11,739–12,984 bp · −
atpH · ON641262.1 · 13,251–13,496 bp · −
atpI · ON641262.1 · 14,532–15,275 bp · −
rps2 · ON641262.1 · 15,498–16,208 bp · −
rpoC2 · ON641262.1 · 16,424–20,605 bp · −
rpoC1 · ON641262.1 · 20,767–23,583 bp · −
rpoB · ON641262.1 · 23,610–26,822 bp · −
psbM · ON641262.1 · 29,246–29,350 bp · −
trnD-GUC · ON641262.1 · 29,863–29,936 bp · −
trnY-GUA · ON641262.1 · 30,047–30,130 bp · −
trnE-UUC · ON641262.1 · 30,210–30,282 bp · −
trnS-UGA · ON641262.1 · 34,928–35,020 bp · −
trnfM-CAU · ON641262.1 · 36,063–36,136 bp · −
rps14 · ON641262.1 · 36,281–36,583 bp · −
psaB · ON641262.1 · 36,708–38,912 bp · −
psaA · ON641262.1 · 38,938–41,190 bp · −
pafI · ON641262.1 · 41,957–43,885 bp · −
rps4 · ON641262.1 · 45,111–45,716 bp · −
trnT-UGU · ON641262.1 · 46,116–46,188 bp · −
ndhJ · ON641262.1 · 48,430–48,906 bp · −
ndhK · ON641262.1 · 49,017–49,694 bp · −
ndhC · ON641262.1 · 49,746–50,108 bp · −
trnV-UAC · ON641262.1 · 51,077–51,719 bp · −
atpE · ON641262.1 · 52,168–52,569 bp · −
atpB · ON641262.1 · 52,566–54,056 bp · −
psbJ · ON641262.1 · 63,540–63,662 bp · −
psbL · ON641262.1 · 63,797–63,913 bp · −
psbF · ON641262.1 · 63,937–64,056 bp · −
psbE · ON641262.1 · 64,071–64,322 bp · −
trnW-CCA · ON641262.1 · 65,693–65,766 bp · −
trnP-UGG · ON641262.1 · 65,940–66,013 bp · −
rpl20 · ON641262.1 · 67,782–68,168 bp · −
rps12 · ON641262.1 · 68,973–69,086 bp · −
rps12 · ON641262.1 · 96,234–97,027 bp · −
clpP1 · ON641262.1 · 69,211–71,119 bp · −
pbf1 · ON641262.1 · 73,442–73,573 bp · −
rpoA · ON641262.1 · 76,961–77,968 bp · −
rps11 · ON641262.1 · 78,040–78,456 bp · −
rpl36 · ON641262.1 · 78,566–78,679 bp · −
infA · ON641262.1 · 78,743–78,976 bp · −
rps8 · ON641262.1 · 79,096–79,500 bp · −
rpl14 · ON641262.1 · 79,670–80,038 bp · −
rpl16 · ON641262.1 · 80,170–81,443 bp · −
rps3 · ON641262.1 · 81,588–82,250 bp · −
rpl22 · ON641262.1 · 82,235–82,702 bp · −
rps19 · ON641262.1 · 82,766–83,044 bp · −
rpl2 · ON641262.1 · 83,104–84,591 bp · −
rpl23 · ON641262.1 · 84,610–84,891 bp · −
trnI-CAU · ON641262.1 · 85,057–85,130 bp · −
trnL-CAA · ON641262.1 · 92,599–92,679 bp · −
ndhB · ON641262.1 · 93,240–95,447 bp · −
rps7 · ON641262.1 · 95,713–96,180 bp · −
trnN-GUU · ON641262.1 · 107,122–107,193 bp · −
ndhF · ON641262.1 · 108,547–110,778 bp · −
ndhD · ON641262.1 · 113,570–114,958 bp · −
psaC · ON641262.1 · 115,194–115,439 bp · −
ndhE · ON641262.1 · 115,674–115,979 bp · −
ndhG · ON641262.1 · 116,203–116,733 bp · −
ndhI · ON641262.1 · 117,118–117,624 bp · −
ndhA · ON641262.1 · 117,700–119,790 bp · −
ndhH · ON641262.1 · 119,792–120,973 bp · −
rps15 · ON641262.1 · 121,073–121,345 bp · −
ycf1 · ON641262.1 · 121,766–127,309 bp · −
trnR-ACG · ON641262.1 · 128,236–128,309 bp · −
rrn5 · ON641262.1 · 128,553–128,673 bp · −
rrn4.5 · ON641262.1 · 128,934–129,036 bp · −
rrn23 · ON641262.1 · 129,135–131,945 bp · −
trnA-UGC · ON641262.1 · 132,118–132,995 bp · −
trnI-GAU · ON641262.1 · 133,065–134,086 bp · −
rrn16 · ON641262.1 · 134,385–135,875 bp · −
trnV-GAC · ON641262.1 · 136,102–136,173 bp · −
ycf15 · ON641262.1 · 142,489–142,737 bp · −
ycf2 · ON641262.1 · 142,828–149,613 bp · −
psbK · ON641262.1 · 7,289–7,480 bp · +
psbI · ON641262.1 · 7,872–7,982 bp · +
trnG-UCC · ON641262.1 · 9,002–9,757 bp · +
trnR-UCU · ON641262.1 · 9,943–10,014 bp · +
trnC-GCA · ON641262.1 · 27,940–28,010 bp · +
petN · ON641262.1 · 28,171–28,260 bp · +
trnT-GGU · ON641262.1 · 30,841–30,912 bp · +
psbD · ON641262.1 · 32,253–33,314 bp · +
psbC · ON641262.1 · 33,298–34,683 bp · +
psbZ · ON641262.1 · 35,368–35,556 bp · +
trnG-GCC · ON641262.1 · 35,828–35,898 bp · +
trnS-GGA · ON641262.1 · 44,737–44,823 bp · +
trnL-UAA · ON641262.1 · 46,872–47,426 bp · +
trnF-GAA · ON641262.1 · 47,725–47,797 bp · +
trnM-CAU · ON641262.1 · 51,900–51,972 bp · +
rbcL · ON641262.1 · 54,854–56,287 bp · +
accD · ON641262.1 · 56,971–58,452 bp · +
psaI · ON641262.1 · 58,916–59,026 bp · +
pafII · ON641262.1 · 59,476–60,030 bp · +
cemA · ON641262.1 · 60,676–61,365 bp · +
petA · ON641262.1 · 61,579–62,541 bp · +
petL · ON641262.1 · 65,194–65,289 bp · +
petG · ON641262.1 · 65,459–65,572 bp · +
psaJ · ON641262.1 · 66,293–66,427 bp · +
rpl33 · ON641262.1 · 66,868–67,071 bp · +
rps18 · ON641262.1 · 67,242–67,547 bp · +
psbB · ON641262.1 · 71,571–73,097 bp · +
psbT · ON641262.1 · 73,272–73,373 bp · +
psbH · ON641262.1 · 73,679–73,900 bp · +
petB · ON641262.1 · 74,026–75,410 bp · +
petD · ON641262.1 · 75,598–76,778 bp · +
ycf2 · ON641262.1 · 85,219–92,004 bp · +
ycf15 · ON641262.1 · 92,095–92,343 bp · +
trnV-GAC · ON641262.1 · 98,659–98,730 bp · +
rrn16 · ON641262.1 · 98,957–100,447 bp · +
trnI-GAU · ON641262.1 · 100,746–101,767 bp · +
trnA-UGC · ON641262.1 · 101,837–102,714 bp · +
rrn23 · ON641262.1 · 102,887–105,697 bp · +
rrn4.5 · ON641262.1 · 105,796–105,898 bp · +
rrn5 · ON641262.1 · 106,159–106,279 bp · +
trnR-ACG · ON641262.1 · 106,523–106,596 bp · +
ycf1 · ON641262.1 · 107,523–108,653 bp · +
rpl32 · ON641262.1 · 111,248–111,421 bp · +
trnL-UAG · ON641262.1 · 112,149–112,228 bp · +
ccsA · ON641262.1 · 112,337–113,314 bp · +
trnN-GUU · ON641262.1 · 127,639–127,710 bp · +
rps7 · ON641262.1 · 138,652–139,119 bp · +
ndhB · ON641262.1 · 139,385–141,592 bp · +
trnL-CAA · ON641262.1 · 142,153–142,233 bp · +
trnI-CAU · ON641262.1 · 149,702–149,775 bp · +
rpl23 · ON641262.1 · 149,941–150,222 bp · +
rpl2 · ON641262.1 · 150,241–151,728 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus villosus subsp. lusitanicus
ANNOTATED PLASTOME
ON641262.1
151,830 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37958 75915 113872 151830 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 408 1466 1059 Locate
trnK-UUU gene − 1687 4227 2541 Locate
matK gene − 1967 3490 1524 Locate
rps16 gene − 4779 5923 1145 Locate
trnQ-UUG gene − 6837 6908 72 Locate
psbK gene + 7289 7480 192 Locate
psbI gene + 7872 7982 111 Locate
trnS-GCU gene − 8180 8267 88 Locate
trnG-UCC gene + 9002 9757 756 Locate
trnR-UCU gene + 9943 10014 72 Locate
atpA gene − 10121 11644 1524 Locate
atpF gene − 11739 12984 1246 Locate
atpH gene − 13251 13496 246 Locate
atpI gene − 14532 15275 744 Locate
rps2 gene − 15498 16208 711 Locate
rpoC2 gene − 16424 20605 4182 Locate
rpoC1 gene − 20767 23583 2817 Locate
rpoB gene − 23610 26822 3213 Locate
trnC-GCA gene + 27940 28010 71 Locate
petN gene + 28171 28260 90 Locate
psbM gene − 29246 29350 105 Locate
trnD-GUC gene − 29863 29936 74 Locate
trnY-GUA gene − 30047 30130 84 Locate
trnE-UUC gene − 30210 30282 73 Locate
trnT-GGU gene + 30841 30912 72 Locate
psbD gene + 32253 33314 1062 Locate
psbC gene + 33298 34683 1386 Locate
trnS-UGA gene − 34928 35020 93 Locate
psbZ gene + 35368 35556 189 Locate
trnG-GCC gene + 35828 35898 71 Locate
trnfM-CAU gene − 36063 36136 74 Locate
rps14 gene − 36281 36583 303 Locate
psaB gene − 36708 38912 2205 Locate
psaA gene − 38938 41190 2253 Locate
pafI gene − 41957 43885 1929 Locate
trnS-GGA gene + 44737 44823 87 Locate
rps4 gene − 45111 45716 606 Locate
trnT-UGU gene − 46116 46188 73 Locate
trnL-UAA gene + 46872 47426 555 Locate
trnF-GAA gene + 47725 47797 73 Locate
ndhJ gene − 48430 48906 477 Locate
ndhK gene − 49017 49694 678 Locate
ndhC gene − 49746 50108 363 Locate
trnV-UAC gene − 51077 51719 643 Locate
trnM-CAU gene + 51900 51972 73 Locate
atpE gene − 52168 52569 402 Locate
atpB gene − 52566 54056 1491 Locate
rbcL gene + 54854 56287 1434 Locate
accD gene + 56971 58452 1482 Locate
psaI gene + 58916 59026 111 Locate
pafII gene + 59476 60030 555 Locate
cemA gene + 60676 61365 690 Locate
petA gene + 61579 62541 963 Locate
psbJ gene − 63540 63662 123 Locate
psbL gene − 63797 63913 117 Locate
psbF gene − 63937 64056 120 Locate
psbE gene − 64071 64322 252 Locate
petL gene + 65194 65289 96 Locate
petG gene + 65459 65572 114 Locate
trnW-CCA gene − 65693 65766 74 Locate
trnP-UGG gene − 65940 66013 74 Locate
psaJ gene + 66293 66427 135 Locate
rpl33 gene + 66868 67071 204 Locate
rps18 gene + 67242 67547 306 Locate
rpl20 gene − 67782 68168 387 Locate
rps12 gene − 68973 69086 114 Locate
clpP1 gene − 69211 71119 1909 Locate
psbB gene + 71571 73097 1527 Locate
psbT gene + 73272 73373 102 Locate
pbf1 gene − 73442 73573 132 Locate
psbH gene + 73679 73900 222 Locate
petB gene + 74026 75410 1385 Locate
petD gene + 75598 76778 1181 Locate
rpoA gene − 76961 77968 1008 Locate
rps11 gene − 78040 78456 417 Locate
rpl36 gene − 78566 78679 114 Locate
infA gene − 78743 78976 234 Locate
rps8 gene − 79096 79500 405 Locate
rpl14 gene − 79670 80038 369 Locate
rpl16 gene − 80170 81443 1274 Locate
rps3 gene − 81588 82250 663 Locate
rpl22 gene − 82235 82702 468 Locate
rps19 gene − 82766 83044 279 Locate
rpl2 gene − 83104 84591 1488 Locate
rpl23 gene − 84610 84891 282 Locate
trnI-CAU gene − 85057 85130 74 Locate
ycf2 gene + 85219 92004 6786 Locate
ycf15 gene + 92095 92343 249 Locate
trnL-CAA gene − 92599 92679 81 Locate
ndhB gene − 93240 95447 2208 Locate
rps7 gene − 95713 96180 468 Locate
rps12 gene − 96234 97027 794 Locate
trnV-GAC gene + 98659 98730 72 Locate
rrn16 gene + 98957 100447 1491 Locate
trnI-GAU gene + 100746 101767 1022 Locate
trnA-UGC gene + 101837 102714 878 Locate
rrn23 gene + 102887 105697 2811 Locate
rrn4.5 gene + 105796 105898 103 Locate
rrn5 gene + 106159 106279 121 Locate
trnR-ACG gene + 106523 106596 74 Locate
trnN-GUU gene − 107122 107193 72 Locate
ycf1 gene + 107523 108653 1131 Locate
ndhF gene − 108547 110778 2232 Locate
rpl32 gene + 111248 111421 174 Locate
trnL-UAG gene + 112149 112228 80 Locate
ccsA gene + 112337 113314 978 Locate
ndhD gene − 113570 114958 1389 Locate
psaC gene − 115194 115439 246 Locate
ndhE gene − 115674 115979 306 Locate
ndhG gene − 116203 116733 531 Locate
ndhI gene − 117118 117624 507 Locate
ndhA gene − 117700 119790 2091 Locate
ndhH gene − 119792 120973 1182 Locate
rps15 gene − 121073 121345 273 Locate
ycf1 gene − 121766 127309 5544 Locate
trnN-GUU gene + 127639 127710 72 Locate
trnR-ACG gene − 128236 128309 74 Locate
rrn5 gene − 128553 128673 121 Locate
rrn4.5 gene − 128934 129036 103 Locate
rrn23 gene − 129135 131945 2811 Locate
trnA-UGC gene − 132118 132995 878 Locate
trnI-GAU gene − 133065 134086 1022 Locate
rrn16 gene − 134385 135875 1491 Locate
trnV-GAC gene − 136102 136173 72 Locate
rps7 gene + 138652 139119 468 Locate
ndhB gene + 139385 141592 2208 Locate
trnL-CAA gene + 142153 142233 81 Locate
ycf15 gene − 142489 142737 249 Locate
ycf2 gene − 142828 149613 6786 Locate
trnI-CAU gene + 149702 149775 74 Locate
rpl23 gene + 149941 150222 282 Locate
rpl2 gene + 150241 151728 1488 Locate
Status Available
Accession ON641262.1
Length 151,830 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources