Thymus vulgaris chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_086487.1 · 11–85 bp · −
psbA · NC_086487.1 · 408–1,466 bp · −
trnK-UUU · NC_086487.1 · 1,687–4,236 bp · −
matK · NC_086487.1 · 1,967–3,499 bp · −
rps16 · NC_086487.1 · 4,789–5,933 bp · −
trnQ-UUG · NC_086487.1 · 6,844–6,915 bp · −
trnS-GCU · NC_086487.1 · 8,132–8,219 bp · −
atpA · NC_086487.1 · 10,027–11,550 bp · −
atpF · NC_086487.1 · 11,644–12,904 bp · −
atpH · NC_086487.1 · 13,171–13,416 bp · −
atpI · NC_086487.1 · 14,451–15,194 bp · −
rps2 · NC_086487.1 · 15,418–16,128 bp · −
rpoC2 · NC_086487.1 · 16,347–20,528 bp · −
rpoC1 · NC_086487.1 · 20,690–23,494 bp · −
rpoB · NC_086487.1 · 23,521–26,733 bp · −
psbM · NC_086487.1 · 29,167–29,271 bp · −
trnD-GUC · NC_086487.1 · 29,789–29,862 bp · −
trnY-GUA · NC_086487.1 · 29,973–30,056 bp · −
trnE-UUC · NC_086487.1 · 30,136–30,208 bp · −
trnS-UGA · NC_086487.1 · 34,863–34,955 bp · −
trnfM-CAU · NC_086487.1 · 35,994–36,067 bp · −
rps14 · NC_086487.1 · 36,212–36,514 bp · −
psaB · NC_086487.1 · 36,637–38,841 bp · −
psaA · NC_086487.1 · 38,867–41,119 bp · −
pafI · NC_086487.1 · 41,890–43,817 bp · −
rps4 · NC_086487.1 · 45,029–45,634 bp · −
trnT-UGU · NC_086487.1 · 46,015–46,087 bp · −
ndhJ · NC_086487.1 · 48,328–48,804 bp · −
ndhK · NC_086487.1 · 48,915–49,592 bp · −
ndhC · NC_086487.1 · 49,644–50,006 bp · −
trnV-UAC · NC_086487.1 · 50,894–51,537 bp · −
atpE · NC_086487.1 · 51,986–52,387 bp · −
atpB · NC_086487.1 · 52,384–53,874 bp · −
psbJ · NC_086487.1 · 63,361–63,483 bp · −
psbL · NC_086487.1 · 63,618–63,734 bp · −
psbF · NC_086487.1 · 63,758–63,877 bp · −
psbE · NC_086487.1 · 63,892–64,143 bp · −
trnW-CCA · NC_086487.1 · 65,520–65,593 bp · −
trnP-UGG · NC_086487.1 · 65,767–65,840 bp · −
rpl20 · NC_086487.1 · 67,595–67,981 bp · −
rps12 · NC_086487.1 · 68,785–68,898 bp · −
rps12 · NC_086487.1 · 96,052–96,845 bp · −
clpP1 · NC_086487.1 · 69,022–70,928 bp · −
pbf1 · NC_086487.1 · 73,250–73,381 bp · −
rpoA · NC_086487.1 · 76,760–77,767 bp · −
rps11 · NC_086487.1 · 77,839–78,255 bp · −
rpl36 · NC_086487.1 · 78,365–78,478 bp · −
infA · NC_086487.1 · 78,542–78,775 bp · −
rps8 · NC_086487.1 · 78,900–79,304 bp · −
rpl14 · NC_086487.1 · 79,478–79,846 bp · −
rpl16 · NC_086487.1 · 79,978–81,242 bp · −
rps3 · NC_086487.1 · 81,387–82,049 bp · −
rpl22 · NC_086487.1 · 82,034–82,501 bp · −
rps19 · NC_086487.1 · 82,571–82,849 bp · −
rpl2 · NC_086487.1 · 82,910–84,397 bp · −
rpl23 · NC_086487.1 · 84,416–84,697 bp · −
trnI-CAU · NC_086487.1 · 84,863–84,936 bp · −
trnL-CAA · NC_086487.1 · 92,417–92,497 bp · −
ndhB · NC_086487.1 · 93,058–95,265 bp · −
rps7 · NC_086487.1 · 95,531–95,998 bp · −
trnN-GUU · NC_086487.1 · 106,937–107,008 bp · −
ndhF · NC_086487.1 · 108,362–110,593 bp · −
ndhD · NC_086487.1 · 113,367–114,755 bp · −
psaC · NC_086487.1 · 114,990–115,235 bp · −
ndhE · NC_086487.1 · 115,470–115,775 bp · −
ndhG · NC_086487.1 · 116,005–116,535 bp · −
ndhI · NC_086487.1 · 116,933–117,439 bp · −
ndhA · NC_086487.1 · 117,515–119,599 bp · −
ndhH · NC_086487.1 · 119,601–120,782 bp · −
rps15 · NC_086487.1 · 120,882–121,154 bp · −
ycf1 · NC_086487.1 · 121,575–127,118 bp · −
trnR-ACG · NC_086487.1 · 128,044–128,117 bp · −
rrn5 · NC_086487.1 · 128,361–128,481 bp · −
rrn4.5 · NC_086487.1 · 128,742–128,844 bp · −
rrn23 · NC_086487.1 · 128,943–131,753 bp · −
trnA-UGC · NC_086487.1 · 131,926–132,803 bp · −
trnI-GAU · NC_086487.1 · 132,873–133,892 bp · −
rrn16 · NC_086487.1 · 134,191–135,681 bp · −
trnV-GAC · NC_086487.1 · 135,908–135,979 bp · −
ycf15 · NC_086487.1 · 142,295–142,543 bp · −
ycf2 · NC_086487.1 · 142,634–149,431 bp · −
psbK · NC_086487.1 · 7,296–7,481 bp · +
psbI · NC_086487.1 · 7,869–7,979 bp · +
trnG-UCC · NC_086487.1 · 8,910–9,667 bp · +
trnR-UCU · NC_086487.1 · 9,849–9,920 bp · +
trnC-GCA · NC_086487.1 · 27,862–27,932 bp · +
petN · NC_086487.1 · 28,093–28,182 bp · +
trnT-GGU · NC_086487.1 · 30,768–30,839 bp · +
psbD · NC_086487.1 · 32,184–33,245 bp · +
psbC · NC_086487.1 · 33,229–34,614 bp · +
psbZ · NC_086487.1 · 35,301–35,489 bp · +
trnG-GCC · NC_086487.1 · 35,761–35,831 bp · +
trnS-GGA · NC_086487.1 · 44,655–44,741 bp · +
trnL-UAA · NC_086487.1 · 46,767–47,321 bp · +
trnF-GAA · NC_086487.1 · 47,614–47,686 bp · +
trnM-CAU · NC_086487.1 · 51,718–51,790 bp · +
rbcL · NC_086487.1 · 54,668–56,101 bp · +
accD · NC_086487.1 · 56,792–58,273 bp · +
psaI · NC_086487.1 · 58,737–58,847 bp · +
pafII · NC_086487.1 · 59,303–59,857 bp · +
cemA · NC_086487.1 · 60,500–61,189 bp · +
petA · NC_086487.1 · 61,403–62,365 bp · +
petL · NC_086487.1 · 65,021–65,116 bp · +
petG · NC_086487.1 · 65,286–65,399 bp · +
psaJ · NC_086487.1 · 66,111–66,245 bp · +
rpl33 · NC_086487.1 · 66,688–66,891 bp · +
rps18 · NC_086487.1 · 67,056–67,361 bp · +
psbB · NC_086487.1 · 71,380–72,906 bp · +
psbT · NC_086487.1 · 73,080–73,181 bp · +
psbH · NC_086487.1 · 73,487–73,708 bp · +
petB · NC_086487.1 · 73,834–75,211 bp · +
petD · NC_086487.1 · 75,399–76,577 bp · +
ycf2 · NC_086487.1 · 85,025–91,822 bp · +
ycf15 · NC_086487.1 · 91,913–92,161 bp · +
trnV-GAC · NC_086487.1 · 98,477–98,548 bp · +
rrn16 · NC_086487.1 · 98,775–100,265 bp · +
trnI-GAU · NC_086487.1 · 100,564–101,583 bp · +
trnA-UGC · NC_086487.1 · 101,653–102,530 bp · +
rrn23 · NC_086487.1 · 102,703–105,513 bp · +
rrn4.5 · NC_086487.1 · 105,612–105,714 bp · +
rrn5 · NC_086487.1 · 105,975–106,095 bp · +
trnR-ACG · NC_086487.1 · 106,339–106,412 bp · +
ycf1 · NC_086487.1 · 107,338–108,468 bp · +
rpl32 · NC_086487.1 · 111,066–111,236 bp · +
trnL-UAG · NC_086487.1 · 111,957–112,036 bp · +
ccsA · NC_086487.1 · 112,139–113,116 bp · +
trnN-GUU · NC_086487.1 · 127,448–127,519 bp · +
rps7 · NC_086487.1 · 138,458–138,925 bp · +
ndhB · NC_086487.1 · 139,191–141,398 bp · +
trnL-CAA · NC_086487.1 · 141,959–142,039 bp · +
trnI-CAU · NC_086487.1 · 149,520–149,593 bp · +
rpl23 · NC_086487.1 · 149,759–150,040 bp · +
rpl2 · NC_086487.1 · 150,059–151,546 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus vulgaris
ANNOTATED PLASTOME
NC_086487.1
151,649 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37912 75824 113737 151649 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 408 1466 1059 Locate
trnK-UUU gene − 1687 4236 2550 Locate
matK gene − 1967 3499 1533 Locate
rps16 gene − 4789 5933 1145 Locate
trnQ-UUG gene − 6844 6915 72 Locate
psbK gene + 7296 7481 186 Locate
psbI gene + 7869 7979 111 Locate
trnS-GCU gene − 8132 8219 88 Locate
trnG-UCC gene + 8910 9667 758 Locate
trnR-UCU gene + 9849 9920 72 Locate
atpA gene − 10027 11550 1524 Locate
atpF gene − 11644 12904 1261 Locate
atpH gene − 13171 13416 246 Locate
atpI gene − 14451 15194 744 Locate
rps2 gene − 15418 16128 711 Locate
rpoC2 gene − 16347 20528 4182 Locate
rpoC1 gene − 20690 23494 2805 Locate
rpoB gene − 23521 26733 3213 Locate
trnC-GCA gene + 27862 27932 71 Locate
petN gene + 28093 28182 90 Locate
psbM gene − 29167 29271 105 Locate
trnD-GUC gene − 29789 29862 74 Locate
trnY-GUA gene − 29973 30056 84 Locate
trnE-UUC gene − 30136 30208 73 Locate
trnT-GGU gene + 30768 30839 72 Locate
psbD gene + 32184 33245 1062 Locate
psbC gene + 33229 34614 1386 Locate
trnS-UGA gene − 34863 34955 93 Locate
psbZ gene + 35301 35489 189 Locate
trnG-GCC gene + 35761 35831 71 Locate
trnfM-CAU gene − 35994 36067 74 Locate
rps14 gene − 36212 36514 303 Locate
psaB gene − 36637 38841 2205 Locate
psaA gene − 38867 41119 2253 Locate
pafI gene − 41890 43817 1928 Locate
trnS-GGA gene + 44655 44741 87 Locate
rps4 gene − 45029 45634 606 Locate
trnT-UGU gene − 46015 46087 73 Locate
trnL-UAA gene + 46767 47321 555 Locate
trnF-GAA gene + 47614 47686 73 Locate
ndhJ gene − 48328 48804 477 Locate
ndhK gene − 48915 49592 678 Locate
ndhC gene − 49644 50006 363 Locate
trnV-UAC gene − 50894 51537 644 Locate
trnM-CAU gene + 51718 51790 73 Locate
atpE gene − 51986 52387 402 Locate
atpB gene − 52384 53874 1491 Locate
rbcL gene + 54668 56101 1434 Locate
accD gene + 56792 58273 1482 Locate
psaI gene + 58737 58847 111 Locate
pafII gene + 59303 59857 555 Locate
cemA gene + 60500 61189 690 Locate
petA gene + 61403 62365 963 Locate
psbJ gene − 63361 63483 123 Locate
psbL gene − 63618 63734 117 Locate
psbF gene − 63758 63877 120 Locate
psbE gene − 63892 64143 252 Locate
petL gene + 65021 65116 96 Locate
petG gene + 65286 65399 114 Locate
trnW-CCA gene − 65520 65593 74 Locate
trnP-UGG gene − 65767 65840 74 Locate
psaJ gene + 66111 66245 135 Locate
rpl33 gene + 66688 66891 204 Locate
rps18 gene + 67056 67361 306 Locate
rpl20 gene − 67595 67981 387 Locate
rps12 gene − 68785 68898 114 Locate
clpP1 gene − 69022 70928 1907 Locate
psbB gene + 71380 72906 1527 Locate
psbT gene + 73080 73181 102 Locate
pbf1 gene − 73250 73381 132 Locate
psbH gene + 73487 73708 222 Locate
petB gene + 73834 75211 1378 Locate
petD gene + 75399 76577 1179 Locate
rpoA gene − 76760 77767 1008 Locate
rps11 gene − 77839 78255 417 Locate
rpl36 gene − 78365 78478 114 Locate
infA gene − 78542 78775 234 Locate
rps8 gene − 78900 79304 405 Locate
rpl14 gene − 79478 79846 369 Locate
rpl16 gene − 79978 81242 1265 Locate
rps3 gene − 81387 82049 663 Locate
rpl22 gene − 82034 82501 468 Locate
rps19 gene − 82571 82849 279 Locate
rpl2 gene − 82910 84397 1488 Locate
rpl23 gene − 84416 84697 282 Locate
trnI-CAU gene − 84863 84936 74 Locate
ycf2 gene + 85025 91822 6798 Locate
ycf15 gene + 91913 92161 249 Locate
trnL-CAA gene − 92417 92497 81 Locate
ndhB gene − 93058 95265 2208 Locate
rps7 gene − 95531 95998 468 Locate
rps12 gene − 96052 96845 794 Locate
trnV-GAC gene + 98477 98548 72 Locate
rrn16 gene + 98775 100265 1491 Locate
trnI-GAU gene + 100564 101583 1020 Locate
trnA-UGC gene + 101653 102530 878 Locate
rrn23 gene + 102703 105513 2811 Locate
rrn4.5 gene + 105612 105714 103 Locate
rrn5 gene + 105975 106095 121 Locate
trnR-ACG gene + 106339 106412 74 Locate
trnN-GUU gene − 106937 107008 72 Locate
ycf1 gene + 107338 108468 1131 Locate
ndhF gene − 108362 110593 2232 Locate
rpl32 gene + 111066 111236 171 Locate
trnL-UAG gene + 111957 112036 80 Locate
ccsA gene + 112139 113116 978 Locate
ndhD gene − 113367 114755 1389 Locate
psaC gene − 114990 115235 246 Locate
ndhE gene − 115470 115775 306 Locate
ndhG gene − 116005 116535 531 Locate
ndhI gene − 116933 117439 507 Locate
ndhA gene − 117515 119599 2085 Locate
ndhH gene − 119601 120782 1182 Locate
rps15 gene − 120882 121154 273 Locate
ycf1 gene − 121575 127118 5544 Locate
trnN-GUU gene + 127448 127519 72 Locate
trnR-ACG gene − 128044 128117 74 Locate
rrn5 gene − 128361 128481 121 Locate
rrn4.5 gene − 128742 128844 103 Locate
rrn23 gene − 128943 131753 2811 Locate
trnA-UGC gene − 131926 132803 878 Locate
trnI-GAU gene − 132873 133892 1020 Locate
rrn16 gene − 134191 135681 1491 Locate
trnV-GAC gene − 135908 135979 72 Locate
rps7 gene + 138458 138925 468 Locate
ndhB gene + 139191 141398 2208 Locate
trnL-CAA gene + 141959 142039 81 Locate
ycf15 gene − 142295 142543 249 Locate
ycf2 gene − 142634 149431 6798 Locate
trnI-CAU gene + 149520 149593 74 Locate
rpl23 gene + 149759 150040 282 Locate
rpl2 gene + 150059 151546 1488 Locate
Status Available
Accession NC_086487.1
Length 151,649 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources