Vitex negundo var. cannabifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PQ541021.1 · 9–82 bp · −
psbA · PQ541021.1 · 432–1,490 bp · −
trnK-UUU · PQ541021.1 · 1,723–4,301 bp · −
matK · PQ541021.1 · 2,022–3,551 bp · −
rps16 · PQ541021.1 · 5,210–6,353 bp · −
trnQ-UUG · PQ541021.1 · 7,595–7,666 bp · −
trnS-GCU · PQ541021.1 · 8,807–8,894 bp · −
ATPA · PQ541021.1 · 10,720–12,243 bp · −
ATPF · PQ541021.1 · 12,324–13,599 bp · −
ATPH · PQ541021.1 · 13,999–14,244 bp · −
ATPI · PQ541021.1 · 15,280–16,023 bp · −
rps2 · PQ541021.1 · 16,273–16,983 bp · −
rpoC2 · PQ541021.1 · 17,219–21,388 bp · −
rpoC1 · PQ541021.1 · 21,555–24,395 bp · −
rpoB · PQ541021.1 · 24,422–27,610 bp · −
psbM · PQ541021.1 · 30,829–30,933 bp · −
trnD-GUC · PQ541021.1 · 31,460–31,533 bp · −
trnY-GUA · PQ541021.1 · 31,642–31,725 bp · −
trnE-UUC · PQ541021.1 · 31,785–31,857 bp · −
trnS-UGA · PQ541021.1 · 36,412–36,504 bp · −
trnfM-CAU · PQ541021.1 · 37,524–37,597 bp · −
rps14 · PQ541021.1 · 37,747–38,049 bp · −
psaB · PQ541021.1 · 38,172–40,376 bp · −
psaA · PQ541021.1 · 40,402–42,654 bp · −
ycf3 · PQ541021.1 · 43,388–45,332 bp · −
rps4 · PQ541021.1 · 46,494–47,099 bp · −
trnT-UGU · PQ541021.1 · 47,468–47,540 bp · −
ndhJ · PQ541021.1 · 49,822–50,298 bp · −
ndhK · PQ541021.1 · 50,405–51,145 bp · −
ndhC · PQ541021.1 · 51,136–51,498 bp · −
trnV-UAC · PQ541021.1 · 52,536–53,195 bp · −
ATPE · PQ541021.1 · 53,671–54,072 bp · −
ATPB · PQ541021.1 · 54,069–55,565 bp · −
psbJ · PQ541021.1 · 65,400–65,522 bp · −
psbL · PQ541021.1 · 65,656–65,772 bp · −
psbF · PQ541021.1 · 65,796–65,915 bp · −
psbE · PQ541021.1 · 65,930–66,181 bp · −
trnW-CCA · PQ541021.1 · 67,619–67,692 bp · −
trnP-UGG · PQ541021.1 · 67,848–67,921 bp · −
rpl20 · PQ541021.1 · 69,742–70,128 bp · −
rps12 · PQ541021.1 · 70,961–71,074 bp · −
rps12 · PQ541021.1 · 98,556–99,354 bp · −
rpoA · PQ541021.1 · 79,107–80,126 bp · −
rps11 · PQ541021.1 · 80,198–80,614 bp · −
rpl36 · PQ541021.1 · 80,716–80,829 bp · −
infA · PQ541021.1 · 80,925–81,158 bp · −
rps8 · PQ541021.1 · 81,283–81,687 bp · −
rpl14 · PQ541021.1 · 81,870–82,238 bp · −
rpl16 · PQ541021.1 · 82,365–83,700 bp · −
rps3 · PQ541021.1 · 83,834–84,496 bp · −
rpl22 · PQ541021.1 · 84,481–84,948 bp · −
rps19 · PQ541021.1 · 85,000–85,278 bp · −
rpl2 · PQ541021.1 · 85,340–86,821 bp · −
rpl23 · PQ541021.1 · 86,840–87,121 bp · −
trnI-CAU · PQ541021.1 · 87,287–87,360 bp · −
trnL-CAA · PQ541021.1 · 94,932–95,012 bp · −
ndhB · PQ541021.1 · 95,560–97,771 bp · −
rps7 · PQ541021.1 · 98,035–98,502 bp · −
trnN-GUU · PQ541021.1 · 109,444–109,515 bp · −
ndhF · PQ541021.1 · 110,892–113,138 bp · −
ndhD · PQ541021.1 · 116,082–117,581 bp · −
psaC · PQ541021.1 · 117,710–117,955 bp · −
ndhE · PQ541021.1 · 118,218–118,523 bp · −
ndhG · PQ541021.1 · 118,737–119,267 bp · −
ndhI · PQ541021.1 · 119,624–120,130 bp · −
ndhA · PQ541021.1 · 120,213–122,394 bp · −
ndhH · PQ541021.1 · 122,396–123,577 bp · −
rps15 · PQ541021.1 · 123,676–123,948 bp · −
ycf1 · PQ541021.1 · 124,363–129,909 bp · −
trnR-ACG · PQ541021.1 · 130,882–130,955 bp · −
rrn5S · PQ541021.1 · 131,199–131,319 bp · −
rrn4.5S · PQ541021.1 · 131,575–131,677 bp · −
rrn23S · PQ541021.1 · 131,776–134,586 bp · −
trnA-UGC · PQ541021.1 · 134,755–135,632 bp · −
trnI-GAU · PQ541021.1 · 135,697–136,715 bp · −
rrn16S · PQ541021.1 · 137,014–138,504 bp · −
trnV-GAC · PQ541021.1 · 138,732–138,803 bp · −
ycf2 · PQ541021.1 · 145,424–152,287 bp · −
psbK · PQ541021.1 · 8,000–8,185 bp · +
psbI · PQ541021.1 · 8,568–8,678 bp · +
trnG-UCC · PQ541021.1 · 9,616–10,363 bp · +
trnR-UCU · PQ541021.1 · 10,545–10,616 bp · +
trnC-GCA · PQ541021.1 · 28,807–28,877 bp · +
petN · PQ541021.1 · 29,734–29,823 bp · +
trnT-GGU · PQ541021.1 · 32,284–32,355 bp · +
psbD · PQ541021.1 · 33,729–34,790 bp · +
psbC · PQ541021.1 · 34,738–36,159 bp · +
psbZ · PQ541021.1 · 36,838–37,026 bp · +
trnG-GCC · PQ541021.1 · 37,296–37,366 bp · +
trnS-GGA · PQ541021.1 · 46,126–46,212 bp · +
trnL-UAA · PQ541021.1 · 48,205–48,774 bp · +
trnF-GAA · PQ541021.1 · 49,080–49,152 bp · +
trnM-CAU · PQ541021.1 · 53,372–53,444 bp · +
rbcL · PQ541021.1 · 56,372–57,814 bp · +
accD · PQ541021.1 · 58,508–59,989 bp · +
psaI · PQ541021.1 · 60,715–60,825 bp · +
ycf4 · PQ541021.1 · 61,266–61,820 bp · +
cemA · PQ541021.1 · 62,483–63,172 bp · +
petA · PQ541021.1 · 63,387–64,349 bp · +
petL · PQ541021.1 · 67,113–67,208 bp · +
petG · PQ541021.1 · 67,383–67,496 bp · +
psaJ · PQ541021.1 · 68,199–68,333 bp · +
rpl33 · PQ541021.1 · 68,812–69,012 bp · +
rps18 · PQ541021.1 · 69,181–69,486 bp · +
rps12 · PQ541021.1 · 140,402–141,200 bp · +
psbB · PQ541021.1 · 73,662–75,188 bp · +
psbT · PQ541021.1 · 75,388–75,495 bp · +
psbH · PQ541021.1 · 75,782–76,021 bp · +
petB · PQ541021.1 · 76,146–77,533 bp · +
petD · PQ541021.1 · 77,722–78,945 bp · +
ycf2 · PQ541021.1 · 87,469–94,332 bp · +
trnV-GAC · PQ541021.1 · 100,953–101,024 bp · +
rrn16S · PQ541021.1 · 101,252–102,742 bp · +
trnI-GAU · PQ541021.1 · 103,041–104,059 bp · +
trnA-UGC · PQ541021.1 · 104,124–105,001 bp · +
rrn23S · PQ541021.1 · 105,170–107,980 bp · +
rrn4.5S · PQ541021.1 · 108,079–108,181 bp · +
rrn5S · PQ541021.1 · 108,437–108,557 bp · +
trnR-ACG · PQ541021.1 · 108,801–108,874 bp · +
rpl32 · PQ541021.1 · 113,676–113,852 bp · +
trnL-UAG · PQ541021.1 · 114,659–114,738 bp · +
ccsA · PQ541021.1 · 114,829–115,815 bp · +
trnN-GUU · PQ541021.1 · 130,241–130,312 bp · +
rps7 · PQ541021.1 · 141,254–141,721 bp · +
ndhB · PQ541021.1 · 141,985–144,196 bp · +
trnL-CAA · PQ541021.1 · 144,744–144,824 bp · +
trnI-CAU · PQ541021.1 · 152,396–152,469 bp · +
rpl23 · PQ541021.1 · 152,635–152,916 bp · +
rpl2 · PQ541021.1 · 152,935–154,416 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex negundo var. cannabifolia
ANNOTATED PLASTOME
PQ541021.1
154,520 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38630 77260 115890 154520 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU ATPA ATPF ATPH ATPI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC ATPE ATPB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 432 1490 1059 Locate
trnK-UUU gene − 1723 4301 2579 Locate
matK gene − 2022 3551 1530 Locate
rps16 gene − 5210 6353 1144 Locate
trnQ-UUG gene − 7595 7666 72 Locate
psbK gene + 8000 8185 186 Locate
psbI gene + 8568 8678 111 Locate
trnS-GCU gene − 8807 8894 88 Locate
trnG-UCC gene + 9616 10363 748 Locate
trnR-UCU gene + 10545 10616 72 Locate
ATPA gene − 10720 12243 1524 Locate
ATPF gene − 12324 13599 1276 Locate
ATPH gene − 13999 14244 246 Locate
ATPI gene − 15280 16023 744 Locate
rps2 gene − 16273 16983 711 Locate
rpoC2 gene − 17219 21388 4170 Locate
rpoC1 gene − 21555 24395 2841 Locate
rpoB gene − 24422 27610 3189 Locate
trnC-GCA gene + 28807 28877 71 Locate
petN gene + 29734 29823 90 Locate
psbM gene − 30829 30933 105 Locate
trnD-GUC gene − 31460 31533 74 Locate
trnY-GUA gene − 31642 31725 84 Locate
trnE-UUC gene − 31785 31857 73 Locate
trnT-GGU gene + 32284 32355 72 Locate
psbD gene + 33729 34790 1062 Locate
psbC gene + 34738 36159 1422 Locate
trnS-UGA gene − 36412 36504 93 Locate
psbZ gene + 36838 37026 189 Locate
trnG-GCC gene + 37296 37366 71 Locate
trnfM-CAU gene − 37524 37597 74 Locate
rps14 gene − 37747 38049 303 Locate
psaB gene − 38172 40376 2205 Locate
psaA gene − 40402 42654 2253 Locate
ycf3 gene − 43388 45332 1945 Locate
trnS-GGA gene + 46126 46212 87 Locate
rps4 gene − 46494 47099 606 Locate
trnT-UGU gene − 47468 47540 73 Locate
trnL-UAA gene + 48205 48774 570 Locate
trnF-GAA gene + 49080 49152 73 Locate
ndhJ gene − 49822 50298 477 Locate
ndhK gene − 50405 51145 741 Locate
ndhC gene − 51136 51498 363 Locate
trnV-UAC gene − 52536 53195 660 Locate
trnM-CAU gene + 53372 53444 73 Locate
ATPE gene − 53671 54072 402 Locate
ATPB gene − 54069 55565 1497 Locate
rbcL gene + 56372 57814 1443 Locate
accD gene + 58508 59989 1482 Locate
psaI gene + 60715 60825 111 Locate
ycf4 gene + 61266 61820 555 Locate
cemA gene + 62483 63172 690 Locate
petA gene + 63387 64349 963 Locate
psbJ gene − 65400 65522 123 Locate
psbL gene − 65656 65772 117 Locate
psbF gene − 65796 65915 120 Locate
psbE gene − 65930 66181 252 Locate
petL gene + 67113 67208 96 Locate
petG gene + 67383 67496 114 Locate
trnW-CCA gene − 67619 67692 74 Locate
trnP-UGG gene − 67848 67921 74 Locate
psaJ gene + 68199 68333 135 Locate
rpl33 gene + 68812 69012 201 Locate
rps18 gene + 69181 69486 306 Locate
rpl20 gene − 69742 70128 387 Locate
rps12 gene − 70961 71074 114 Locate
psbB gene + 73662 75188 1527 Locate
psbT gene + 75388 75495 108 Locate
psbH gene + 75782 76021 240 Locate
petB gene + 76146 77533 1388 Locate
petD gene + 77722 78945 1224 Locate
rpoA gene − 79107 80126 1020 Locate
rps11 gene − 80198 80614 417 Locate
rpl36 gene − 80716 80829 114 Locate
infA gene − 80925 81158 234 Locate
rps8 gene − 81283 81687 405 Locate
rpl14 gene − 81870 82238 369 Locate
rpl16 gene − 82365 83700 1336 Locate
rps3 gene − 83834 84496 663 Locate
rpl22 gene − 84481 84948 468 Locate
rps19 gene − 85000 85278 279 Locate
rpl2 gene − 85340 86821 1482 Locate
rpl23 gene − 86840 87121 282 Locate
trnI-CAU gene − 87287 87360 74 Locate
ycf2 gene + 87469 94332 6864 Locate
trnL-CAA gene − 94932 95012 81 Locate
ndhB gene − 95560 97771 2212 Locate
rps7 gene − 98035 98502 468 Locate
rps12 gene − 98556 99354 799 Locate
trnV-GAC gene + 100953 101024 72 Locate
rrn16S gene + 101252 102742 1491 Locate
trnI-GAU gene + 103041 104059 1019 Locate
trnA-UGC gene + 104124 105001 878 Locate
rrn23S gene + 105170 107980 2811 Locate
rrn4.5S gene + 108079 108181 103 Locate
rrn5S gene + 108437 108557 121 Locate
trnR-ACG gene + 108801 108874 74 Locate
trnN-GUU gene − 109444 109515 72 Locate
ndhF gene − 110892 113138 2247 Locate
rpl32 gene + 113676 113852 177 Locate
trnL-UAG gene + 114659 114738 80 Locate
ccsA gene + 114829 115815 987 Locate
ndhD gene − 116082 117581 1500 Locate
psaC gene − 117710 117955 246 Locate
ndhE gene − 118218 118523 306 Locate
ndhG gene − 118737 119267 531 Locate
ndhI gene − 119624 120130 507 Locate
ndhA gene − 120213 122394 2182 Locate
ndhH gene − 122396 123577 1182 Locate
rps15 gene − 123676 123948 273 Locate
ycf1 gene − 124363 129909 5547 Locate
trnN-GUU gene + 130241 130312 72 Locate
trnR-ACG gene − 130882 130955 74 Locate
rrn5S gene − 131199 131319 121 Locate
rrn4.5S gene − 131575 131677 103 Locate
rrn23S gene − 131776 134586 2811 Locate
trnA-UGC gene − 134755 135632 878 Locate
trnI-GAU gene − 135697 136715 1019 Locate
rrn16S gene − 137014 138504 1491 Locate
trnV-GAC gene − 138732 138803 72 Locate
rps12 gene + 140402 141200 799 Locate
rps7 gene + 141254 141721 468 Locate
ndhB gene + 141985 144196 2212 Locate
trnL-CAA gene + 144744 144824 81 Locate
ycf2 gene − 145424 152287 6864 Locate
trnI-CAU gene + 152396 152469 74 Locate
rpl23 gene + 152635 152916 282 Locate
rpl2 gene + 152935 154416 1482 Locate
Status Available
Accession PQ541021.1
Length 154,520 bp
GC content 38.3%
Annotated genes 128
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 11 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources