Vitex parviflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_065666.1 · 9–82 bp · −
psbA · NC_065666.1 · 656–1,714 bp · −
trnK-UUU · NC_065666.1 · 1,945–4,543 bp · −
matK · NC_065666.1 · 2,246–3,784 bp · −
rps16 · NC_065666.1 · 5,489–6,647 bp · −
trnQ-UUG · NC_065666.1 · 7,173–7,244 bp · −
trnS-GCU · NC_065666.1 · 8,396–8,483 bp · −
atpA · NC_065666.1 · 10,350–11,873 bp · −
atpF · NC_065666.1 · 11,950–13,220 bp · −
atpH · NC_065666.1 · 13,592–13,837 bp · −
atpI · NC_065666.1 · 14,854–15,597 bp · −
rps2 · NC_065666.1 · 15,826–16,536 bp · −
rpoC2 · NC_065666.1 · 16,865–20,920 bp · −
rpoC1 · NC_065666.1 · 21,075–23,895 bp · −
rpoB · NC_065666.1 · 23,922–27,110 bp · −
psbM · NC_065666.1 · 30,326–30,430 bp · −
trnD-GUC · NC_065666.1 · 30,957–31,030 bp · −
trnY-GUA · NC_065666.1 · 31,139–31,222 bp · −
trnE-UUC · NC_065666.1 · 31,282–31,354 bp · −
trnS-UGA · NC_065666.1 · 36,062–36,154 bp · −
trnM-CAU · NC_065666.1 · 37,184–37,257 bp · −
rps14 · NC_065666.1 · 37,407–37,709 bp · −
psaB · NC_065666.1 · 37,832–40,036 bp · −
psaA · NC_065666.1 · 40,062–42,314 bp · −
ycf3 · NC_065666.1 · 43,060–45,015 bp · −
rps4 · NC_065666.1 · 46,103–46,708 bp · −
trnT-UGU · NC_065666.1 · 47,092–47,164 bp · −
ndhJ · NC_065666.1 · 49,450–49,926 bp · −
ndhK · NC_065666.1 · 50,041–50,718 bp · −
ndhC · NC_065666.1 · 50,772–51,134 bp · −
atpE · NC_065666.1 · 53,247–53,648 bp · −
atpB · NC_065666.1 · 53,645–55,141 bp · −
psbJ · NC_065666.1 · 65,006–65,128 bp · −
psbL · NC_065666.1 · 65,263–65,379 bp · −
psbF · NC_065666.1 · 65,403–65,522 bp · −
psbE · NC_065666.1 · 65,537–65,788 bp · −
trnW-CCA · NC_065666.1 · 67,232–67,305 bp · −
trnP-UGG · NC_065666.1 · 67,467–67,540 bp · −
rpl20 · NC_065666.1 · 69,361–69,747 bp · −
rps12 · NC_065666.1 · 70,588–70,701 bp · −
rps12 · NC_065666.1 · 98,734–98,976 bp · −
clpP · NC_065666.1 · 70,850–72,813 bp · −
psbN · NC_065666.1 · 75,183–75,314 bp · −
rpoA · NC_065666.1 · 78,947–79,768 bp · −
rps11 · NC_065666.1 · 79,840–80,256 bp · −
rpl36 · NC_065666.1 · 80,358–80,471 bp · −
infA · NC_065666.1 · 80,567–80,800 bp · −
rps8 · NC_065666.1 · 80,935–81,339 bp · −
rpl14 · NC_065666.1 · 81,525–81,893 bp · −
rpl16 · NC_065666.1 · 82,020–82,430 bp · −
rps3 · NC_065666.1 · 83,447–84,109 bp · −
rpl22 · NC_065666.1 · 84,094–84,561 bp · −
rps19 · NC_065666.1 · 84,613–84,891 bp · −
rpl2 · NC_065666.1 · 84,946–86,437 bp · −
rpl23 · NC_065666.1 · 86,456–86,737 bp · −
trnM-CAU · NC_065666.1 · 86,903–86,976 bp · −
trnL-CAA · NC_065666.1 · 94,543–94,623 bp · −
ndhB · NC_065666.1 · 95,171–97,382 bp · −
rps7 · NC_065666.1 · 97,657–98,124 bp · −
rrn4.5S · NC_065666.1 · 107,697–107,884 bp · −
trnN-GUU · NC_065666.1 · 109,031–109,102 bp · −
ndhF · NC_065666.1 · 110,479–112,725 bp · −
ndhD · NC_065666.1 · 115,667–117,166 bp · −
psaC · NC_065666.1 · 117,294–117,539 bp · −
ndhE · NC_065666.1 · 117,801–118,106 bp · −
ndhG · NC_065666.1 · 118,320–118,850 bp · −
ndhI · NC_065666.1 · 119,199–119,705 bp · −
ndhA · NC_065666.1 · 119,788–121,931 bp · −
ndhH · NC_065666.1 · 121,933–123,114 bp · −
rps15 · NC_065666.1 · 123,213–123,485 bp · −
ycf1 · NC_065666.1 · 123,887–128,626 bp · −
trnR-ACG · NC_065666.1 · 130,412–130,485 bp · −
rrn5S · NC_065666.1 · 130,719–130,849 bp · −
rrn23S · NC_065666.1 · 131,275–134,085 bp · −
trnA-UGC · NC_065666.1 · 134,254–135,137 bp · −
trnE-UUC · NC_065666.1 · 135,202–136,221 bp · −
rrn16S · NC_065666.1 · 136,520–138,010 bp · −
trnV-GAC · NC_065666.1 · 138,235–138,306 bp · −
ycf15 · NC_065666.1 · 144,586–144,783 bp · −
ycf2 · NC_065666.1 · 144,925–151,788 bp · −
psbK · NC_065666.1 · 7,578–7,763 bp · +
psbI · NC_065666.1 · 8,150–8,260 bp · +
trnS-CGA · NC_065666.1 · 9,211–9,977 bp · +
trnR-UCU · NC_065666.1 · 10,175–10,246 bp · +
trnC-GCA · NC_065666.1 · 28,288–28,358 bp · +
petN · NC_065666.1 · 29,221–29,310 bp · +
trnT-GGU · NC_065666.1 · 31,921–31,992 bp · +
psbD · NC_065666.1 · 33,388–34,449 bp · +
psbC · NC_065666.1 · 34,397–35,818 bp · +
psbZ · NC_065666.1 · 36,481–36,669 bp · +
trnG-GCC · NC_065666.1 · 36,948–37,018 bp · +
trnS-GGA · NC_065666.1 · 45,736–45,822 bp · +
trnL-UAA · NC_065666.1 · 47,840–48,413 bp · +
trnF-GAA · NC_065666.1 · 48,706–48,778 bp · +
trnM-CAU · NC_065666.1 · 52,983–53,055 bp · +
rbcL · NC_065666.1 · 55,927–57,381 bp · +
accD · NC_065666.1 · 58,094–59,575 bp · +
psaI · NC_065666.1 · 60,284–60,394 bp · +
ycf4 · NC_065666.1 · 60,838–61,392 bp · +
cemA · NC_065666.1 · 62,047–62,736 bp · +
petA · NC_065666.1 · 62,951–63,913 bp · +
petL · NC_065666.1 · 66,726–66,821 bp · +
petG · NC_065666.1 · 66,996–67,109 bp · +
psaJ · NC_065666.1 · 67,822–67,956 bp · +
rpl33 · NC_065666.1 · 68,439–68,639 bp · +
rps18 · NC_065666.1 · 68,809–69,114 bp · +
rps12 · NC_065666.1 · 139,897–140,139 bp · +
psbB · NC_065666.1 · 73,284–74,810 bp · +
psbT · NC_065666.1 · 75,008–75,115 bp · +
psbH · NC_065666.1 · 75,402–75,641 bp · +
petB · NC_065666.1 · 75,766–77,161 bp · +
petD · NC_065666.1 · 78,068–78,592 bp · +
ycf2 · NC_065666.1 · 87,085–93,948 bp · +
ycf15 · NC_065666.1 · 94,090–94,287 bp · +
trnV-GAC · NC_065666.1 · 100,567–100,638 bp · +
rrn16S · NC_065666.1 · 100,863–102,353 bp · +
trnE-UUC · NC_065666.1 · 102,652–103,671 bp · +
trnA-UGC · NC_065666.1 · 103,736–104,619 bp · +
rrn23S · NC_065666.1 · 104,788–107,598 bp · +
rrn5S · NC_065666.1 · 108,024–108,154 bp · +
trnR-ACG · NC_065666.1 · 108,388–108,461 bp · +
trnL-UAG · NC_065666.1 · 114,242–114,321 bp · +
ccsA · NC_065666.1 · 114,407–115,381 bp · +
trnN-GUU · NC_065666.1 · 129,771–129,842 bp · +
rrn4.5S · NC_065666.1 · 130,989–131,176 bp · +
rps7 · NC_065666.1 · 140,749–141,216 bp · +
ndhB · NC_065666.1 · 141,491–143,702 bp · +
trnL-CAA · NC_065666.1 · 144,250–144,330 bp · +
trnM-CAU · NC_065666.1 · 151,897–151,970 bp · +
rpl23 · NC_065666.1 · 152,136–152,417 bp · +
rpl2 · NC_065666.1 · 152,436–153,927 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex parviflora
ANNOTATED PLASTOME
NC_065666.1
154,024 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38506 77012 115518 154024 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnE-UUC trnA-UGC rrn23S rrn5S trnR-ACG trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnE-UUC rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 656 1714 1059 Locate
trnK-UUU gene − 1945 4543 2599 Locate
matK gene − 2246 3784 1539 Locate
rps16 gene − 5489 6647 1159 Locate
trnQ-UUG gene − 7173 7244 72 Locate
psbK gene + 7578 7763 186 Locate
psbI gene + 8150 8260 111 Locate
trnS-GCU gene − 8396 8483 88 Locate
trnS-CGA gene + 9211 9977 767 Locate
trnR-UCU gene + 10175 10246 72 Locate
atpA gene − 10350 11873 1524 Locate
atpF gene − 11950 13220 1271 Locate
atpH gene − 13592 13837 246 Locate
atpI gene − 14854 15597 744 Locate
rps2 gene − 15826 16536 711 Locate
rpoC2 gene − 16865 20920 4056 Locate
rpoC1 gene − 21075 23895 2821 Locate
rpoB gene − 23922 27110 3189 Locate
trnC-GCA gene + 28288 28358 71 Locate
petN gene + 29221 29310 90 Locate
psbM gene − 30326 30430 105 Locate
trnD-GUC gene − 30957 31030 74 Locate
trnY-GUA gene − 31139 31222 84 Locate
trnE-UUC gene − 31282 31354 73 Locate
trnT-GGU gene + 31921 31992 72 Locate
psbD gene + 33388 34449 1062 Locate
psbC gene + 34397 35818 1422 Locate
trnS-UGA gene − 36062 36154 93 Locate
psbZ gene + 36481 36669 189 Locate
trnG-GCC gene + 36948 37018 71 Locate
trnM-CAU gene − 37184 37257 74 Locate
rps14 gene − 37407 37709 303 Locate
psaB gene − 37832 40036 2205 Locate
psaA gene − 40062 42314 2253 Locate
ycf3 gene − 43060 45015 1956 Locate
trnS-GGA gene + 45736 45822 87 Locate
rps4 gene − 46103 46708 606 Locate
trnT-UGU gene − 47092 47164 73 Locate
trnL-UAA gene + 47840 48413 574 Locate
trnF-GAA gene + 48706 48778 73 Locate
ndhJ gene − 49450 49926 477 Locate
ndhK gene − 50041 50718 678 Locate
ndhC gene − 50772 51134 363 Locate
trnM-CAU gene + 52983 53055 73 Locate
atpE gene − 53247 53648 402 Locate
atpB gene − 53645 55141 1497 Locate
rbcL gene + 55927 57381 1455 Locate
accD gene + 58094 59575 1482 Locate
psaI gene + 60284 60394 111 Locate
ycf4 gene + 60838 61392 555 Locate
cemA gene + 62047 62736 690 Locate
petA gene + 62951 63913 963 Locate
psbJ gene − 65006 65128 123 Locate
psbL gene − 65263 65379 117 Locate
psbF gene − 65403 65522 120 Locate
psbE gene − 65537 65788 252 Locate
petL gene + 66726 66821 96 Locate
petG gene + 66996 67109 114 Locate
trnW-CCA gene − 67232 67305 74 Locate
trnP-UGG gene − 67467 67540 74 Locate
psaJ gene + 67822 67956 135 Locate
rpl33 gene + 68439 68639 201 Locate
rps18 gene + 68809 69114 306 Locate
rpl20 gene − 69361 69747 387 Locate
rps12 gene − 70588 70701 114 Locate
clpP gene − 70850 72813 1964 Locate
psbB gene + 73284 74810 1527 Locate
psbT gene + 75008 75115 108 Locate
psbN gene − 75183 75314 132 Locate
psbH gene + 75402 75641 240 Locate
petB gene + 75766 77161 1396 Locate
petD gene + 78068 78592 525 Locate
rpoA gene − 78947 79768 822 Locate
rps11 gene − 79840 80256 417 Locate
rpl36 gene − 80358 80471 114 Locate
infA gene − 80567 80800 234 Locate
rps8 gene − 80935 81339 405 Locate
rpl14 gene − 81525 81893 369 Locate
rpl16 gene − 82020 82430 411 Locate
rps3 gene − 83447 84109 663 Locate
rpl22 gene − 84094 84561 468 Locate
rps19 gene − 84613 84891 279 Locate
rpl2 gene − 84946 86437 1492 Locate
rpl23 gene − 86456 86737 282 Locate
trnM-CAU gene − 86903 86976 74 Locate
ycf2 gene + 87085 93948 6864 Locate
ycf15 gene + 94090 94287 198 Locate
trnL-CAA gene − 94543 94623 81 Locate
ndhB gene − 95171 97382 2212 Locate
rps7 gene − 97657 98124 468 Locate
rps12 gene − 98734 98976 243 Locate
trnV-GAC gene + 100567 100638 72 Locate
rrn16S gene + 100863 102353 1491 Locate
trnE-UUC gene + 102652 103671 1020 Locate
trnA-UGC gene + 103736 104619 884 Locate
rrn23S gene + 104788 107598 2811 Locate
rrn4.5S gene − 107697 107884 188 Locate
rrn5S gene + 108024 108154 131 Locate
trnR-ACG gene + 108388 108461 74 Locate
trnN-GUU gene − 109031 109102 72 Locate
ndhF gene − 110479 112725 2247 Locate
trnL-UAG gene + 114242 114321 80 Locate
ccsA gene + 114407 115381 975 Locate
ndhD gene − 115667 117166 1500 Locate
psaC gene − 117294 117539 246 Locate
ndhE gene − 117801 118106 306 Locate
ndhG gene − 118320 118850 531 Locate
ndhI gene − 119199 119705 507 Locate
ndhA gene − 119788 121931 2144 Locate
ndhH gene − 121933 123114 1182 Locate
rps15 gene − 123213 123485 273 Locate
ycf1 gene − 123887 128626 4740 Locate
trnN-GUU gene + 129771 129842 72 Locate
trnR-ACG gene − 130412 130485 74 Locate
rrn5S gene − 130719 130849 131 Locate
rrn4.5S gene + 130989 131176 188 Locate
rrn23S gene − 131275 134085 2811 Locate
trnA-UGC gene − 134254 135137 884 Locate
trnE-UUC gene − 135202 136221 1020 Locate
rrn16S gene − 136520 138010 1491 Locate
trnV-GAC gene − 138235 138306 72 Locate
rps12 gene + 139897 140139 243 Locate
rps7 gene + 140749 141216 468 Locate
ndhB gene + 141491 143702 2212 Locate
trnL-CAA gene + 144250 144330 81 Locate
ycf15 gene − 144586 144783 198 Locate
ycf2 gene − 144925 151788 6864 Locate
trnM-CAU gene + 151897 151970 74 Locate
rpl23 gene + 152136 152417 282 Locate
rpl2 gene + 152436 153927 1492 Locate
Status Available
Accession NC_065666.1
Length 154,024 bp
GC content 38.3%
Annotated genes 130
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources