Ajuga macrosperma chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084166.1 · 4–78 bp · −
psbA · NC_084166.1 · 402–1,460 bp · −
trnK-UUU · NC_084166.1 · 1,693–4,263 bp · −
matK · NC_084166.1 · 1,961–3,523 bp · −
rps16 · NC_084166.1 · 5,157–6,301 bp · −
trnQ-UUG · NC_084166.1 · 7,123–7,194 bp · −
trnS-GCU · NC_084166.1 · 8,322–8,409 bp · −
atpA · NC_084166.1 · 10,234–11,757 bp · −
atpF · NC_084166.1 · 11,872–13,111 bp · −
atpH · NC_084166.1 · 13,470–13,715 bp · −
atpI · NC_084166.1 · 14,683–15,426 bp · −
rps2 · NC_084166.1 · 15,642–16,352 bp · −
rpoC2 · NC_084166.1 · 16,586–20,716 bp · −
rpoC1 · NC_084166.1 · 20,889–23,739 bp · −
rpoB · NC_084166.1 · 23,766–26,978 bp · −
psbM · NC_084166.1 · 29,159–29,263 bp · −
trnD-GUC · NC_084166.1 · 29,778–29,851 bp · −
trnY-GUA · NC_084166.1 · 29,951–30,034 bp · −
trnE-UUC · NC_084166.1 · 30,094–30,166 bp · −
trnS-UGA · NC_084166.1 · 34,632–34,724 bp · −
trnfM-CAU · NC_084166.1 · 35,755–35,828 bp · −
rps14 · NC_084166.1 · 35,973–36,275 bp · −
psaB · NC_084166.1 · 36,398–38,602 bp · −
psaA · NC_084166.1 · 38,628–40,880 bp · −
pafI · NC_084166.1 · 41,603–43,526 bp · −
rps4 · NC_084166.1 · 44,344–44,949 bp · −
trnT-UGU · NC_084166.1 · 45,291–45,363 bp · −
ndhJ · NC_084166.1 · 47,583–48,059 bp · −
ndhK · NC_084166.1 · 48,160–48,843 bp · −
ndhC · NC_084166.1 · 48,896–49,258 bp · −
trnV-UAC · NC_084166.1 · 50,093–50,759 bp · −
atpE · NC_084166.1 · 51,212–51,613 bp · −
atpB · NC_084166.1 · 51,610–53,106 bp · −
psbJ · NC_084166.1 · 62,505–62,627 bp · −
psbL · NC_084166.1 · 62,769–62,885 bp · −
psbF · NC_084166.1 · 62,909–63,028 bp · −
psbE · NC_084166.1 · 63,043–63,294 bp · −
trnW-CCA · NC_084166.1 · 64,687–64,760 bp · −
trnP-UGG · NC_084166.1 · 64,922–64,995 bp · −
rpl20 · NC_084166.1 · 66,828–67,214 bp · −
rps12 · NC_084166.1 · 68,054–68,167 bp · −
rps12 · NC_084166.1 · 95,324–96,120 bp · −
rpoA · NC_084166.1 · 76,065–77,078 bp · −
rps11 · NC_084166.1 · 77,150–77,566 bp · −
rpl36 · NC_084166.1 · 77,668–77,781 bp · −
infA · NC_084166.1 · 77,877–78,110 bp · −
rps8 · NC_084166.1 · 78,244–78,648 bp · −
rpl14 · NC_084166.1 · 78,819–79,187 bp · −
rpl16 · NC_084166.1 · 79,315–80,553 bp · −
rps3 · NC_084166.1 · 80,711–81,361 bp · −
rpl22 · NC_084166.1 · 81,346–81,813 bp · −
rps19 · NC_084166.1 · 81,868–82,146 bp · −
rpl2 · NC_084166.1 · 82,199–83,687 bp · −
rpl23 · NC_084166.1 · 83,706–83,987 bp · −
trnI-CAU · NC_084166.1 · 84,153–84,226 bp · −
trnL-CAA · NC_084166.1 · 91,686–91,766 bp · −
ndhB · NC_084166.1 · 92,315–94,527 bp · −
rps7 · NC_084166.1 · 94,803–95,270 bp · −
trnN-GUU · NC_084166.1 · 106,153–106,224 bp · −
ndhF · NC_084166.1 · 107,611–109,851 bp · −
ndhD · NC_084166.1 · 112,363–113,892 bp · −
psaC · NC_084166.1 · 113,985–114,230 bp · −
ndhE · NC_084166.1 · 114,488–114,793 bp · −
ndhG · NC_084166.1 · 115,027–115,557 bp · −
ndhI · NC_084166.1 · 115,895–116,401 bp · −
ndhA · NC_084166.1 · 116,477–118,540 bp · −
ndhH · NC_084166.1 · 118,542–119,723 bp · −
rps15 · NC_084166.1 · 119,820–120,092 bp · −
ycf1 · NC_084166.1 · 120,468–125,882 bp · −
trnR-ACG · NC_084166.1 · 126,855–126,928 bp · −
rrn5S · NC_084166.1 · 127,173–127,293 bp · −
rrn4.5S · NC_084166.1 · 127,523–127,625 bp · −
rrn23S · NC_084166.1 · 127,724–130,542 bp · −
trnA-UGC · NC_084166.1 · 130,704–131,580 bp · −
trnI-GAU · NC_084166.1 · 131,640–132,659 bp · −
rrn16S · NC_084166.1 · 132,958–134,448 bp · −
trnV-GAC · NC_084166.1 · 134,678–134,749 bp · −
ycf15 · NC_084166.1 · 141,030–141,227 bp · −
ycf2 · NC_084166.1 · 141,369–148,133 bp · −
psbK · NC_084166.1 · 7,532–7,717 bp · +
psbI · NC_084166.1 · 8,097–8,207 bp · +
trnG-UCC · NC_084166.1 · 9,111–9,871 bp · +
trnR-UCU · NC_084166.1 · 10,057–10,128 bp · +
trnC-GCA · NC_084166.1 · 28,152–28,222 bp · +
petN · NC_084166.1 · 28,530–28,619 bp · +
trnT-GGU · NC_084166.1 · 30,573–30,644 bp · +
psbD · NC_084166.1 · 31,947–33,008 bp · +
psbC · NC_084166.1 · 32,956–34,377 bp · +
psbZ · NC_084166.1 · 35,050–35,238 bp · +
trnG-GCC · NC_084166.1 · 35,506–35,576 bp · +
trnS-GGA · NC_084166.1 · 43,948–44,034 bp · +
trnL-UAA · NC_084166.1 · 46,001–46,566 bp · +
trnF-GAA · NC_084166.1 · 46,865–46,937 bp · +
trnM-CAU · NC_084166.1 · 50,940–51,012 bp · +
rbcL · NC_084166.1 · 53,909–55,357 bp · +
accD · NC_084166.1 · 56,091–57,566 bp · +
psaI · NC_084166.1 · 57,997–58,107 bp · +
pafII · NC_084166.1 · 58,519–59,073 bp · +
cemA · NC_084166.1 · 59,726–60,415 bp · +
petA · NC_084166.1 · 60,649–61,611 bp · +
petL · NC_084166.1 · 64,184–64,279 bp · +
petG · NC_084166.1 · 64,449–64,562 bp · +
psaJ · NC_084166.1 · 65,287–65,421 bp · +
rpl33 · NC_084166.1 · 65,893–66,093 bp · +
rps18 · NC_084166.1 · 66,275–66,580 bp · +
rps12 · NC_084166.1 · 136,328–137,124 bp · +
psbB · NC_084166.1 · 70,695–72,221 bp · +
psbT · NC_084166.1 · 72,397–72,498 bp · +
psbH · NC_084166.1 · 72,801–73,022 bp · +
petB · NC_084166.1 · 73,139–74,471 bp · +
petD · NC_084166.1 · 74,665–75,879 bp · +
ycf2 · NC_084166.1 · 84,315–91,079 bp · +
ycf15 · NC_084166.1 · 91,221–91,418 bp · +
trnV-GAC · NC_084166.1 · 97,699–97,770 bp · +
rrn16S · NC_084166.1 · 98,000–99,490 bp · +
trnI-GAU · NC_084166.1 · 99,789–100,808 bp · +
trnA-UGC · NC_084166.1 · 100,868–101,744 bp · +
rrn23S · NC_084166.1 · 101,906–104,724 bp · +
rrn4.5S · NC_084166.1 · 104,823–104,925 bp · +
rrn5S · NC_084166.1 · 105,155–105,275 bp · +
trnR-ACG · NC_084166.1 · 105,520–105,593 bp · +
ycf1 · NC_084166.1 · 106,566–107,720 bp · +
rpl32 · NC_084166.1 · 110,388–110,564 bp · +
trnL-UAG · NC_084166.1 · 110,964–111,043 bp · +
ccsA · NC_084166.1 · 111,137–112,108 bp · +
trnN-GUU · NC_084166.1 · 126,224–126,295 bp · +
rps7 · NC_084166.1 · 137,178–137,645 bp · +
ndhB · NC_084166.1 · 137,921–140,133 bp · +
trnL-CAA · NC_084166.1 · 140,682–140,762 bp · +
trnI-CAU · NC_084166.1 · 148,222–148,295 bp · +
rpl23 · NC_084166.1 · 148,461–148,742 bp · +
rpl2 · NC_084166.1 · 148,761–150,249 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga macrosperma
ANNOTATED PLASTOME
NC_084166.1
150,362 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37590 75181 112772 150362 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4263 2571 Locate
matK gene − 1961 3523 1563 Locate
rps16 gene − 5157 6301 1145 Locate
trnQ-UUG gene − 7123 7194 72 Locate
psbK gene + 7532 7717 186 Locate
psbI gene + 8097 8207 111 Locate
trnS-GCU gene − 8322 8409 88 Locate
trnG-UCC gene + 9111 9871 761 Locate
trnR-UCU gene + 10057 10128 72 Locate
atpA gene − 10234 11757 1524 Locate
atpF gene − 11872 13111 1240 Locate
atpH gene − 13470 13715 246 Locate
atpI gene − 14683 15426 744 Locate
rps2 gene − 15642 16352 711 Locate
rpoC2 gene − 16586 20716 4131 Locate
rpoC1 gene − 20889 23739 2851 Locate
rpoB gene − 23766 26978 3213 Locate
trnC-GCA gene + 28152 28222 71 Locate
petN gene + 28530 28619 90 Locate
psbM gene − 29159 29263 105 Locate
trnD-GUC gene − 29778 29851 74 Locate
trnY-GUA gene − 29951 30034 84 Locate
trnE-UUC gene − 30094 30166 73 Locate
trnT-GGU gene + 30573 30644 72 Locate
psbD gene + 31947 33008 1062 Locate
psbC gene + 32956 34377 1422 Locate
trnS-UGA gene − 34632 34724 93 Locate
psbZ gene + 35050 35238 189 Locate
trnG-GCC gene + 35506 35576 71 Locate
trnfM-CAU gene − 35755 35828 74 Locate
rps14 gene − 35973 36275 303 Locate
psaB gene − 36398 38602 2205 Locate
psaA gene − 38628 40880 2253 Locate
pafI gene − 41603 43526 1924 Locate
trnS-GGA gene + 43948 44034 87 Locate
rps4 gene − 44344 44949 606 Locate
trnT-UGU gene − 45291 45363 73 Locate
trnL-UAA gene + 46001 46566 566 Locate
trnF-GAA gene + 46865 46937 73 Locate
ndhJ gene − 47583 48059 477 Locate
ndhK gene − 48160 48843 684 Locate
ndhC gene − 48896 49258 363 Locate
trnV-UAC gene − 50093 50759 667 Locate
trnM-CAU gene + 50940 51012 73 Locate
atpE gene − 51212 51613 402 Locate
atpB gene − 51610 53106 1497 Locate
rbcL gene + 53909 55357 1449 Locate
accD gene + 56091 57566 1476 Locate
psaI gene + 57997 58107 111 Locate
pafII gene + 58519 59073 555 Locate
cemA gene + 59726 60415 690 Locate
petA gene + 60649 61611 963 Locate
psbJ gene − 62505 62627 123 Locate
psbL gene − 62769 62885 117 Locate
psbF gene − 62909 63028 120 Locate
psbE gene − 63043 63294 252 Locate
petL gene + 64184 64279 96 Locate
petG gene + 64449 64562 114 Locate
trnW-CCA gene − 64687 64760 74 Locate
trnP-UGG gene − 64922 64995 74 Locate
psaJ gene + 65287 65421 135 Locate
rpl33 gene + 65893 66093 201 Locate
rps18 gene + 66275 66580 306 Locate
rpl20 gene − 66828 67214 387 Locate
rps12 gene − 68054 68167 114 Locate
psbB gene + 70695 72221 1527 Locate
psbT gene + 72397 72498 102 Locate
psbH gene + 72801 73022 222 Locate
petB gene + 73139 74471 1333 Locate
petD gene + 74665 75879 1215 Locate
rpoA gene − 76065 77078 1014 Locate
rps11 gene − 77150 77566 417 Locate
rpl36 gene − 77668 77781 114 Locate
infA gene − 77877 78110 234 Locate
rps8 gene − 78244 78648 405 Locate
rpl14 gene − 78819 79187 369 Locate
rpl16 gene − 79315 80553 1239 Locate
rps3 gene − 80711 81361 651 Locate
rpl22 gene − 81346 81813 468 Locate
rps19 gene − 81868 82146 279 Locate
rpl2 gene − 82199 83687 1489 Locate
rpl23 gene − 83706 83987 282 Locate
trnI-CAU gene − 84153 84226 74 Locate
ycf2 gene + 84315 91079 6765 Locate
ycf15 gene + 91221 91418 198 Locate
trnL-CAA gene − 91686 91766 81 Locate
ndhB gene − 92315 94527 2213 Locate
rps7 gene − 94803 95270 468 Locate
rps12 gene − 95324 96120 797 Locate
trnV-GAC gene + 97699 97770 72 Locate
rrn16S gene + 98000 99490 1491 Locate
trnI-GAU gene + 99789 100808 1020 Locate
trnA-UGC gene + 100868 101744 877 Locate
rrn23S gene + 101906 104724 2819 Locate
rrn4.5S gene + 104823 104925 103 Locate
rrn5S gene + 105155 105275 121 Locate
trnR-ACG gene + 105520 105593 74 Locate
trnN-GUU gene − 106153 106224 72 Locate
ycf1 gene + 106566 107720 1155 Locate
ndhF gene − 107611 109851 2241 Locate
rpl32 gene + 110388 110564 177 Locate
trnL-UAG gene + 110964 111043 80 Locate
ccsA gene + 111137 112108 972 Locate
ndhD gene − 112363 113892 1530 Locate
psaC gene − 113985 114230 246 Locate
ndhE gene − 114488 114793 306 Locate
ndhG gene − 115027 115557 531 Locate
ndhI gene − 115895 116401 507 Locate
ndhA gene − 116477 118540 2064 Locate
ndhH gene − 118542 119723 1182 Locate
rps15 gene − 119820 120092 273 Locate
ycf1 gene − 120468 125882 5415 Locate
trnN-GUU gene + 126224 126295 72 Locate
trnR-ACG gene − 126855 126928 74 Locate
rrn5S gene − 127173 127293 121 Locate
rrn4.5S gene − 127523 127625 103 Locate
rrn23S gene − 127724 130542 2819 Locate
trnA-UGC gene − 130704 131580 877 Locate
trnI-GAU gene − 131640 132659 1020 Locate
rrn16S gene − 132958 134448 1491 Locate
trnV-GAC gene − 134678 134749 72 Locate
rps12 gene + 136328 137124 797 Locate
rps7 gene + 137178 137645 468 Locate
ndhB gene + 137921 140133 2213 Locate
trnL-CAA gene + 140682 140762 81 Locate
ycf15 gene − 141030 141227 198 Locate
ycf2 gene − 141369 148133 6765 Locate
trnI-CAU gene + 148222 148295 74 Locate
rpl23 gene + 148461 148742 282 Locate
rpl2 gene + 148761 150249 1489 Locate
Status Available
Accession NC_084166.1
Length 150,362 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources