Callicarpa dichotoma chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH · LC775283.1 · 4–77 bp · −
psbA · LC775283.1 · 403–1,461 bp · −
trnK · LC775283.1 · 4,250–4,286 bp · −
trnK · LC775283.1 · 1,715–1,749 bp · −
trnK · LC775283.1 · 1,750–4,249 bp · −
matK · LC775283.1 · 2,021–3,544 bp · −
rps16 · LC775283.1 · 6,241–6,280 bp · −
rps16 · LC775283.1 · 5,147–5,373 bp · −
trnQ · LC775283.1 · 7,422–7,493 bp · −
trnS · LC775283.1 · 8,628–8,715 bp · −
atpA · LC775283.1 · 10,517–12,040 bp · −
atpF · LC775283.1 · 13,210–13,354 bp · −
atpF · LC775283.1 · 12,108–12,517 bp · −
atpH · LC775283.1 · 13,721–13,966 bp · −
atpI · LC775283.1 · 14,983–15,726 bp · −
rps2 · LC775283.1 · 15,957–16,667 bp · −
rpoC2 · LC775283.1 · 16,896–21,077 bp · −
rpoC1 · LC775283.1 · 23,626–24,057 bp · −
rpoC1 · LC775283.1 · 21,232–22,842 bp · −
rpoB · LC775283.1 · 24,084–27,296 bp · −
psbM · LC775283.1 · 30,399–30,503 bp · −
trnD · LC775283.1 · 31,040–31,113 bp · −
trnY · LC775283.1 · 31,222–31,305 bp · −
trnE · LC775283.1 · 31,365–31,437 bp · −
trnS · LC775283.1 · 36,130–36,222 bp · −
trnfM · LC775283.1 · 37,240–37,313 bp · −
rps14 · LC775283.1 · 37,463–37,765 bp · −
psaB · LC775283.1 · 37,888–40,092 bp · −
psaA · LC775283.1 · 40,118–42,370 bp · −
ycf3 · LC775283.1 · 44,195–44,902 bp · −
ycf3 · LC775283.1 · 43,967–44,194 bp · −
ycf3 · LC775283.1 · 43,238–43,966 bp · −
ycf3 · LC775283.1 · 43,085–43,237 bp · −
ycf3 · LC775283.1 · 43,085–45,031 bp · −
ycf3 · LC775283.1 · 44,903–45,031 bp · −
rps4 · LC775283.1 · 46,234–46,839 bp · −
trnT · LC775283.1 · 47,204–47,276 bp · −
ndhJ · LC775283.1 · 49,578–50,054 bp · −
ndhK · LC775283.1 · 50,155–50,832 bp · −
ndhC · LC775283.1 · 50,886–51,248 bp · −
trnV · LC775283.1 · 53,052–53,089 bp · −
trnV · LC775283.1 · 52,472–53,051 bp · −
trnV · LC775283.1 · 52,437–52,471 bp · −
atpE · LC775283.1 · 53,551–53,952 bp · −
atpB · LC775283.1 · 53,949–55,445 bp · −
psbJ · LC775283.1 · 65,102–65,224 bp · −
psbL · LC775283.1 · 65,358–65,474 bp · −
psbF · LC775283.1 · 65,498–65,617 bp · −
psbE · LC775283.1 · 65,632–65,883 bp · −
trnW · LC775283.1 · 67,323–67,396 bp · −
trnP · LC775283.1 · 67,559–67,632 bp · −
rpl20 · LC775283.1 · 69,542–69,928 bp · −
rps12 · LC775283.1 · 70,747–70,860 bp · −
rps12 · LC775283.1 · 98,787–99,018 bp · −
rps12 · LC775283.1 · 98,251–98,786 bp · −
rps12 · LC775283.1 · 98,225–98,250 bp · −
clpP · LC775283.1 · 72,875–72,943 bp · −
clpP · LC775283.1 · 72,148–72,874 bp · −
clpP · LC775283.1 · 71,857–72,147 bp · −
clpP · LC775283.1 · 71,222–71,856 bp · −
clpP · LC775283.1 · 70,994–71,221 bp · −
psbN · LC775283.1 · 75,291–75,422 bp · −
rpoA · LC775283.1 · 78,832–79,845 bp · −
rps11 · LC775283.1 · 79,917–80,333 bp · −
rpl36 · LC775283.1 · 80,435–80,548 bp · −
infA · LC775283.1 · 80,644–80,877 bp · −
rps8 · LC775283.1 · 81,002–81,406 bp · −
rpl14 · LC775283.1 · 81,580–81,948 bp · −
rpl16 · LC775283.1 · 83,357–83,365 bp · −
rpl16 · LC775283.1 · 82,474–83,356 bp · −
rpl16 · LC775283.1 · 82,075–82,473 bp · −
rps3 · LC775283.1 · 83,508–84,170 bp · −
rpl22 · LC775283.1 · 84,180–84,617 bp · −
rps19 · LC775283.1 · 84,677–84,955 bp · −
rpl2 · LC775283.1 · 86,109–86,501 bp · −
rpl2 · LC775283.1 · 85,445–86,108 bp · −
rpl2 · LC775283.1 · 85,010–85,444 bp · −
rpl23 · LC775283.1 · 86,520–86,801 bp · −
trnI · LC775283.1 · 86,967–87,040 bp · −
trnL · LC775283.1 · 94,590–94,670 bp · −
ndhB · LC775283.1 · 96,653–97,429 bp · −
ndhB · LC775283.1 · 95,974–96,652 bp · −
ndhB · LC775283.1 · 95,218–95,973 bp · −
rps7 · LC775283.1 · 97,704–98,171 bp · −
trnN · LC775283.1 · 109,144–109,215 bp · −
ccsA · LC775283.1 · 123,565–124,536 bp · −
trnL · LC775283.1 · 124,622–124,701 bp · −
rpl32 · LC775283.1 · 125,465–125,641 bp · −
ycf1 · LC775283.1 · 128,405–129,586 bp · −
trnR · LC775283.1 · 130,452–130,530 bp · −
rrn5 · LC775283.1 · 130,769–130,889 bp · −
rrn4.5 · LC775283.1 · 131,145–131,247 bp · −
rrn23 · LC775283.1 · 131,345–134,155 bp · −
trnA · LC775283.1 · 135,173–135,210 bp · −
trnA · LC775283.1 · 134,359–135,172 bp · −
trnA · LC775283.1 · 134,324–134,358 bp · −
trnI · LC775283.1 · 136,259–136,295 bp · −
trnI · LC775283.1 · 135,310–136,258 bp · −
trnI · LC775283.1 · 135,275–135,309 bp · −
rrn16 · LC775283.1 · 136,594–138,084 bp · −
trnV · LC775283.1 · 138,330–138,401 bp · −
ycf15 · LC775283.1 · 144,697–144,894 bp · −
ycf2 · LC775283.1 · 145,027–151,887 bp · −
psbK · LC775283.1 · 7,823–8,008 bp · +
psbI · LC775283.1 · 8,399–8,509 bp · +
trnG · LC775283.1 · 9,404–9,426 bp · +
trnG · LC775283.1 · 9,427–10,115 bp · +
trnG · LC775283.1 · 10,116–10,163 bp · +
trnR · LC775283.1 · 10,341–10,412 bp · +
trnC · LC775283.1 · 28,472–28,542 bp · +
petN · LC775283.1 · 29,374–29,463 bp · +
trnT · LC775283.1 · 32,004–32,075 bp · +
psbD · LC775283.1 · 33,457–34,518 bp · +
psbC · LC775283.1 · 34,466–35,887 bp · +
psbZ · LC775283.1 · 36,552–36,740 bp · +
trnG · LC775283.1 · 37,016–37,086 bp · +
trnS · LC775283.1 · 45,867–45,953 bp · +
trnL · LC775283.1 · 47,946–47,980 bp · +
trnL · LC775283.1 · 47,981–48,471 bp · +
trnL · LC775283.1 · 48,472–48,521 bp · +
trnF · LC775283.1 · 48,863–48,935 bp · +
trnM · LC775283.1 · 53,271–53,343 bp · +
rbcL · LC775283.1 · 56,229–57,668 bp · +
accD · LC775283.1 · 58,313–59,857 bp · +
psaI · LC775283.1 · 60,559–60,669 bp · +
ycf4 · LC775283.1 · 61,109–61,663 bp · +
cemA · LC775283.1 · 62,311–63,000 bp · +
petA · LC775283.1 · 63,190–64,152 bp · +
petL · LC775283.1 · 66,817–66,912 bp · +
petG · LC775283.1 · 67,087–67,200 bp · +
psaJ · LC775283.1 · 68,023–68,157 bp · +
rpl33 · LC775283.1 · 68,631–68,831 bp · +
rps18 · LC775283.1 · 69,002–69,307 bp · +
rps12 · LC775283.1 · 140,008–140,801 bp · +
psbB · LC775283.1 · 73,405–74,931 bp · +
psbT · LC775283.1 · 75,123–75,230 bp · +
psbH · LC775283.1 · 75,510–75,749 bp · +
petB · LC775283.1 · 75,874–75,879 bp · +
petB · LC775283.1 · 75,880–76,608 bp · +
petB · LC775283.1 · 76,609–77,250 bp · +
petD · LC775283.1 · 77,439–77,446 bp · +
petD · LC775283.1 · 77,447–78,180 bp · +
petD · LC775283.1 · 78,181–78,655 bp · +
ycf2 · LC775283.1 · 87,139–93,999 bp · +
ycf15 · LC775283.1 · 94,132–94,329 bp · +
trnV · LC775283.1 · 100,625–100,696 bp · +
rrn16 · LC775283.1 · 100,942–102,432 bp · +
trnI · LC775283.1 · 102,731–102,767 bp · +
trnI · LC775283.1 · 102,768–103,716 bp · +
trnI · LC775283.1 · 103,717–103,751 bp · +
trnA · LC775283.1 · 103,816–103,853 bp · +
trnA · LC775283.1 · 103,854–104,667 bp · +
trnA · LC775283.1 · 104,668–104,702 bp · +
rrn23 · LC775283.1 · 104,871–107,681 bp · +
rrn4.5 · LC775283.1 · 107,779–107,881 bp · +
rrn5 · LC775283.1 · 108,137–108,257 bp · +
trnR · LC775283.1 · 108,496–108,574 bp · +
ycf1 · LC775283.1 · 109,440–115,103 bp · +
rps15 · LC775283.1 · 115,485–115,757 bp · +
ndhH · LC775283.1 · 115,854–117,035 bp · +
ndhA · LC775283.1 · 117,037–117,589 bp · +
ndhA · LC775283.1 · 117,590–118,683 bp · +
ndhA · LC775283.1 · 118,684–119,222 bp · +
ndhI · LC775283.1 · 119,298–119,804 bp · +
ndhG · LC775283.1 · 120,146–120,676 bp · +
ndhE · LC775283.1 · 120,881–121,186 bp · +
psaC · LC775283.1 · 121,437–121,682 bp · +
ndhD · LC775283.1 · 121,803–123,305 bp · +
ndhF · LC775283.1 · 126,157–128,400 bp · +
trnN · LC775283.1 · 129,811–129,882 bp · +
rps12 · LC775283.1 · 140,008–140,239 bp · +
rps12 · LC775283.1 · 140,240–140,775 bp · +
rps12 · LC775283.1 · 140,776–140,801 bp · +
rps7 · LC775283.1 · 140,855–141,322 bp · +
ndhB · LC775283.1 · 141,597–142,373 bp · +
ndhB · LC775283.1 · 142,374–143,052 bp · +
ndhB · LC775283.1 · 143,053–143,808 bp · +
trnL · LC775283.1 · 144,356–144,436 bp · +
trnI · LC775283.1 · 151,986–152,059 bp · +
rpl23 · LC775283.1 · 152,225–152,506 bp · +
rpl2 · LC775283.1 · 152,525–152,917 bp · +
rpl2 · LC775283.1 · 152,918–153,581 bp · +
rpl2 · LC775283.1 · 153,582–154,016 bp · +
rps19 · LC775283.1 · 154,071–154,110 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa dichotoma
ANNOTATED PLASTOME
LC775283.1
154,110 bp · 137 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38528 77055 115582 154110 bp
Forward strand 5′ → 3′
psbK psbI trnG trnG trnG trnR trnC petN trnT psbD psbC psbZ trnG trnS trnL trnL trnL trnF trnM rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petB petB petD petD petD ycf2 ycf15 trnV rrn16 trnI trnI trnI trnA trnA trnA rrn23 rrn4.5 rrn5 trnR ycf1 rps15 ndhH ndhA ndhA ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN rps12 rps12 rps12 rps12 rps7 ndhB ndhB ndhB trnL trnI rpl23 rpl2 rpl2 rpl2 rps19
trnH psbA trnK trnK matK trnK rps16 rps16 trnQ trnS atpA atpF atpF atpH atpI rps2 rpoC2 rpoC1 rpoC1 rpoB psbM trnD trnY trnE trnS trnfM rps14 psaB psaA ycf3 ycf3 ycf3 ycf3 ycf3 ycf3 rps4 trnT ndhJ ndhK ndhC trnV trnV trnV atpE atpB psbJ psbL psbF psbE trnW trnP rpl20 rps12 clpP clpP clpP clpP clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rpl16 rpl16 rps3 rpl22 rps19 rpl2 rpl2 rpl2 rpl23 trnI trnL ndhB ndhB ndhB rps7 rps12 rps12 rps12 trnN ccsA trnL rpl32 ycf1 trnR rrn5 rrn4.5 rrn23 trnA trnA trnA trnI trnI trnI rrn16 trnV ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
184 local segments
Gene Type Group Strand Start End Length
trnH gene − 4 77 74 Locate
psbA gene − 403 1461 1059 Locate
trnK gene − 1715 1749 35 Locate
trnK gene − 1750 4249 2500 Locate
matK gene − 2021 3544 1524 Locate
trnK gene − 4250 4286 37 Locate
rps16 CDS − 5147 5373 227 Locate
rps16 CDS − 6241 6280 40 Locate
trnQ gene − 7422 7493 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8399 8509 111 Locate
trnS gene − 8628 8715 88 Locate
trnG gene + 9404 9426 23 Locate
trnG gene + 9427 10115 689 Locate
trnG gene + 10116 10163 48 Locate
trnR gene + 10341 10412 72 Locate
atpA gene − 10517 12040 1524 Locate
atpF CDS − 12108 12517 410 Locate
atpF CDS − 13210 13354 145 Locate
atpH gene − 13721 13966 246 Locate
atpI gene − 14983 15726 744 Locate
rps2 gene − 15957 16667 711 Locate
rpoC2 gene − 16896 21077 4182 Locate
rpoC1 CDS − 21232 22842 1611 Locate
rpoC1 CDS − 23626 24057 432 Locate
rpoB gene − 24084 27296 3213 Locate
trnC gene + 28472 28542 71 Locate
petN gene + 29374 29463 90 Locate
psbM gene − 30399 30503 105 Locate
trnD gene − 31040 31113 74 Locate
trnY gene − 31222 31305 84 Locate
trnE gene − 31365 31437 73 Locate
trnT gene + 32004 32075 72 Locate
psbD gene + 33457 34518 1062 Locate
psbC gene + 34466 35887 1422 Locate
trnS gene − 36130 36222 93 Locate
psbZ gene + 36552 36740 189 Locate
trnG gene + 37016 37086 71 Locate
trnfM gene − 37240 37313 74 Locate
rps14 gene − 37463 37765 303 Locate
psaB gene − 37888 40092 2205 Locate
psaA gene − 40118 42370 2253 Locate
ycf3 gene − 43085 43237 153 Locate
ycf3 gene − 43085 45031 1947 Locate
ycf3 gene − 43238 43966 729 Locate
ycf3 gene − 43967 44194 228 Locate
ycf3 gene − 44195 44902 708 Locate
ycf3 gene − 44903 45031 129 Locate
trnS gene + 45867 45953 87 Locate
rps4 gene − 46234 46839 606 Locate
trnT gene − 47204 47276 73 Locate
trnL gene + 47946 47980 35 Locate
trnL gene + 47981 48471 491 Locate
trnL gene + 48472 48521 50 Locate
trnF gene + 48863 48935 73 Locate
ndhJ gene − 49578 50054 477 Locate
ndhK gene − 50155 50832 678 Locate
ndhC gene − 50886 51248 363 Locate
trnV gene − 52437 52471 35 Locate
trnV gene − 52472 53051 580 Locate
trnV gene − 53052 53089 38 Locate
trnM gene + 53271 53343 73 Locate
atpE gene − 53551 53952 402 Locate
atpB gene − 53949 55445 1497 Locate
rbcL gene + 56229 57668 1440 Locate
accD gene + 58313 59857 1545 Locate
psaI gene + 60559 60669 111 Locate
ycf4 gene + 61109 61663 555 Locate
cemA gene + 62311 63000 690 Locate
petA gene + 63190 64152 963 Locate
psbJ gene − 65102 65224 123 Locate
psbL gene − 65358 65474 117 Locate
psbF gene − 65498 65617 120 Locate
psbE gene − 65632 65883 252 Locate
petL gene + 66817 66912 96 Locate
petG gene + 67087 67200 114 Locate
trnW gene − 67323 67396 74 Locate
trnP gene − 67559 67632 74 Locate
psaJ gene + 68023 68157 135 Locate
rpl33 gene + 68631 68831 201 Locate
rps18 gene + 69002 69307 306 Locate
rpl20 gene − 69542 69928 387 Locate
rps12 gene − 70747 70860 114 Locate
clpP gene − 70994 71221 228 Locate
clpP gene − 71222 71856 635 Locate
clpP gene − 71857 72147 291 Locate
clpP gene − 72148 72874 727 Locate
clpP gene − 72875 72943 69 Locate
psbB gene + 73405 74931 1527 Locate
psbT gene + 75123 75230 108 Locate
psbN gene − 75291 75422 132 Locate
psbH gene + 75510 75749 240 Locate
petB gene + 75874 75879 6 Locate
petB gene + 75880 76608 729 Locate
petB gene + 76609 77250 642 Locate
petD gene + 77439 77446 8 Locate
petD gene + 77447 78180 734 Locate
petD gene + 78181 78655 475 Locate
rpoA gene − 78832 79845 1014 Locate
rps11 gene − 79917 80333 417 Locate
rpl36 gene − 80435 80548 114 Locate
infA gene − 80644 80877 234 Locate
rps8 gene − 81002 81406 405 Locate
rpl14 gene − 81580 81948 369 Locate
rpl16 gene − 82075 82473 399 Locate
rpl16 gene − 82474 83356 883 Locate
rpl16 gene − 83357 83365 9 Locate
rps3 gene − 83508 84170 663 Locate
rpl22 gene − 84180 84617 438 Locate
rps19 gene − 84677 84955 279 Locate
rpl2 gene − 85010 85444 435 Locate
rpl2 gene − 85445 86108 664 Locate
rpl2 gene − 86109 86501 393 Locate
rpl23 gene − 86520 86801 282 Locate
trnI gene − 86967 87040 74 Locate
ycf2 gene + 87139 93999 6861 Locate
ycf15 gene + 94132 94329 198 Locate
trnL gene − 94590 94670 81 Locate
ndhB gene − 95218 95973 756 Locate
ndhB gene − 95974 96652 679 Locate
ndhB gene − 96653 97429 777 Locate
rps7 gene − 97704 98171 468 Locate
rps12 gene − 98225 98250 26 Locate
rps12 gene − 98251 98786 536 Locate
rps12 gene − 98787 99018 232 Locate
trnV gene + 100625 100696 72 Locate
rrn16 gene + 100942 102432 1491 Locate
trnI gene + 102731 102767 37 Locate
trnI gene + 102768 103716 949 Locate
trnI gene + 103717 103751 35 Locate
trnA gene + 103816 103853 38 Locate
trnA gene + 103854 104667 814 Locate
trnA gene + 104668 104702 35 Locate
rrn23 gene + 104871 107681 2811 Locate
rrn4.5 gene + 107779 107881 103 Locate
rrn5 gene + 108137 108257 121 Locate
trnR gene + 108496 108574 79 Locate
trnN gene − 109144 109215 72 Locate
ycf1 gene + 109440 115103 5664 Locate
rps15 gene + 115485 115757 273 Locate
ndhH gene + 115854 117035 1182 Locate
ndhA gene + 117037 117589 553 Locate
ndhA gene + 117590 118683 1094 Locate
ndhA gene + 118684 119222 539 Locate
ndhI gene + 119298 119804 507 Locate
ndhG gene + 120146 120676 531 Locate
ndhE gene + 120881 121186 306 Locate
psaC gene + 121437 121682 246 Locate
ndhD gene + 121803 123305 1503 Locate
ccsA gene − 123565 124536 972 Locate
trnL gene − 124622 124701 80 Locate
rpl32 gene − 125465 125641 177 Locate
ndhF gene + 126157 128400 2244 Locate
ycf1 gene − 128405 129586 1182 Locate
trnN gene + 129811 129882 72 Locate
trnR gene − 130452 130530 79 Locate
rrn5 gene − 130769 130889 121 Locate
rrn4.5 gene − 131145 131247 103 Locate
rrn23 gene − 131345 134155 2811 Locate
trnA gene − 134324 134358 35 Locate
trnA gene − 134359 135172 814 Locate
trnA gene − 135173 135210 38 Locate
trnI gene − 135275 135309 35 Locate
trnI gene − 135310 136258 949 Locate
trnI gene − 136259 136295 37 Locate
rrn16 gene − 136594 138084 1491 Locate
trnV gene − 138330 138401 72 Locate
rps12 gene + 140008 140239 232 Locate
rps12 gene + 140008 140801 794 Locate
rps12 gene + 140240 140775 536 Locate
rps12 gene + 140776 140801 26 Locate
rps7 gene + 140855 141322 468 Locate
ndhB gene + 141597 142373 777 Locate
ndhB gene + 142374 143052 679 Locate
ndhB gene + 143053 143808 756 Locate
trnL gene + 144356 144436 81 Locate
ycf15 gene − 144697 144894 198 Locate
ycf2 gene − 145027 151887 6861 Locate
trnI gene + 151986 152059 74 Locate
rpl23 gene + 152225 152506 282 Locate
rpl2 gene + 152525 152917 393 Locate
rpl2 gene + 152918 153581 664 Locate
rpl2 gene + 153582 154016 435 Locate
rps19 gene + 154071 154110 40 Locate
Status Available
Accession LC775283.1
Length 154,110 bp
GC content 38.1%
Annotated genes 137
Gene sequence records 8
Translation Rna 53 Photosystem Ii 15 Other 24 Ribosomal Protein 39 Atp Synthase 7 Rna Polymerase 5 Cytochrome 10 Photosystem I 5 Nad Dehydrogenase 18 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources