Callicarpa kochiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_063509.1 · 4–77 bp · −
psbA · NC_063509.1 · 427–1,485 bp · −
trnK-UUU · NC_063509.1 · 1,739–4,311 bp · −
matK · NC_063509.1 · 2,046–3,569 bp · −
rps16 · NC_063509.1 · 5,171–6,304 bp · −
trnQ-UUG · NC_063509.1 · 7,446–7,517 bp · −
trnS-GCU · NC_063509.1 · 8,654–8,741 bp · −
atpA · NC_063509.1 · 10,562–12,085 bp · −
atpF · NC_063509.1 · 12,153–13,402 bp · −
atpH · NC_063509.1 · 13,770–14,015 bp · −
atpI · NC_063509.1 · 15,031–15,774 bp · −
rps2 · NC_063509.1 · 16,005–16,715 bp · −
rpoC2 · NC_063509.1 · 16,931–21,112 bp · −
rpoC1 · NC_063509.1 · 21,267–24,092 bp · −
rpoB · NC_063509.1 · 24,119–27,331 bp · −
psbM · NC_063509.1 · 30,409–30,513 bp · −
trnD-GUC · NC_063509.1 · 31,050–31,123 bp · −
trnY-GUA · NC_063509.1 · 31,232–31,315 bp · −
trnE-UUC · NC_063509.1 · 31,375–31,447 bp · −
trnS-UGA · NC_063509.1 · 36,127–36,219 bp · −
trnM-CAU · NC_063509.1 · 37,235–37,308 bp · −
rps14 · NC_063509.1 · 37,458–37,760 bp · −
psaB · NC_063509.1 · 37,883–40,087 bp · −
psaA · NC_063509.1 · 40,113–42,365 bp · −
ycf3 · NC_063509.1 · 43,079–45,028 bp · −
rps4 · NC_063509.1 · 46,231–46,836 bp · −
trnT-UGU · NC_063509.1 · 47,203–47,275 bp · −
ndhJ · NC_063509.1 · 49,582–50,058 bp · −
ndhK · NC_063509.1 · 50,159–50,836 bp · −
ndhC · NC_063509.1 · 50,890–51,252 bp · −
atpE · NC_063509.1 · 53,557–53,958 bp · −
atpB · NC_063509.1 · 53,955–55,451 bp · −
psbJ · NC_063509.1 · 65,087–65,209 bp · −
psbL · NC_063509.1 · 65,343–65,459 bp · −
psbF · NC_063509.1 · 65,483–65,602 bp · −
psbE · NC_063509.1 · 65,617–65,868 bp · −
trnW-CCA · NC_063509.1 · 67,304–67,377 bp · −
trnP-UGG · NC_063509.1 · 67,540–67,613 bp · −
rpl20 · NC_063509.1 · 69,531–69,917 bp · −
rps12 · NC_063509.1 · 70,736–70,849 bp · −
rps12 · NC_063509.1 · 98,221–99,014 bp · −
clpP · NC_063509.1 · 70,983–72,930 bp · −
psbN · NC_063509.1 · 75,279–75,410 bp · −
rpoA · NC_063509.1 · 78,821–79,834 bp · −
rps11 · NC_063509.1 · 79,906–80,322 bp · −
rpl36 · NC_063509.1 · 80,424–80,537 bp · −
infA · NC_063509.1 · 80,633–80,866 bp · −
rps8 · NC_063509.1 · 80,991–81,395 bp · −
rpl14 · NC_063509.1 · 81,569–81,937 bp · −
rpl16 · NC_063509.1 · 82,064–83,360 bp · −
rps3 · NC_063509.1 · 83,503–84,165 bp · −
rpl22 · NC_063509.1 · 84,175–84,612 bp · −
rps19 · NC_063509.1 · 84,672–84,950 bp · −
rpl2 · NC_063509.1 · 85,006–86,497 bp · −
rpl23 · NC_063509.1 · 86,516–86,797 bp · −
trnM-CAU · NC_063509.1 · 86,963–87,036 bp · −
trnL-CAA · NC_063509.1 · 94,586–94,666 bp · −
ndhB · NC_063509.1 · 95,214–97,425 bp · −
rps7 · NC_063509.1 · 97,700–98,167 bp · −
trnN-GUU · NC_063509.1 · 109,140–109,211 bp · −
ndhF · NC_063509.1 · 110,629–112,872 bp · −
ndhD · NC_063509.1 · 115,751–117,250 bp · −
psaC · NC_063509.1 · 117,374–117,619 bp · −
ndhE · NC_063509.1 · 117,870–118,175 bp · −
ndhG · NC_063509.1 · 118,389–118,919 bp · −
ndhI · NC_063509.1 · 119,268–119,774 bp · −
ndhA · NC_063509.1 · 119,850–122,026 bp · −
ndhH · NC_063509.1 · 122,028–123,209 bp · −
rps15 · NC_063509.1 · 123,306–123,578 bp · −
ycf1 · NC_063509.1 · 123,960–129,551 bp · −
trnR-ACG · NC_063509.1 · 130,522–130,595 bp · −
rrn5S · NC_063509.1 · 130,839–130,959 bp · −
rrn4.5S · NC_063509.1 · 131,215–131,317 bp · −
rrn23S · NC_063509.1 · 131,415–134,225 bp · −
trnA-UGC · NC_063509.1 · 134,394–135,280 bp · −
trnI · NC_063509.1 · 135,345–136,365 bp · −
rrn16S · NC_063509.1 · 136,664–138,154 bp · −
trnV-GAC · NC_063509.1 · 138,400–138,471 bp · −
ycf15 · NC_063509.1 · 144,767–144,964 bp · −
ycf2 · NC_063509.1 · 145,097–151,957 bp · −
psbK · NC_063509.1 · 7,851–8,036 bp · +
psbI · NC_063509.1 · 8,426–8,536 bp · +
trnS-CGA · NC_063509.1 · 9,448–10,209 bp · +
trnR-UCU · NC_063509.1 · 10,386–10,457 bp · +
trnC-GCA · NC_063509.1 · 28,507–28,577 bp · +
petN · NC_063509.1 · 29,409–29,498 bp · +
trnT-GGU · NC_063509.1 · 32,004–32,075 bp · +
psbD · NC_063509.1 · 33,455–34,516 bp · +
psbC · NC_063509.1 · 34,464–35,885 bp · +
psbZ · NC_063509.1 · 36,549–36,737 bp · +
trnG-GCC · NC_063509.1 · 37,013–37,083 bp · +
trnS-GGA · NC_063509.1 · 45,864–45,950 bp · +
trnL-UAA · NC_063509.1 · 47,948–48,520 bp · +
trnF-GAA · NC_063509.1 · 48,862–48,934 bp · +
trnM-CAU · NC_063509.1 · 53,277–53,349 bp · +
rbcL · NC_063509.1 · 56,237–57,676 bp · +
accD · NC_063509.1 · 58,363–59,856 bp · +
psaI · NC_063509.1 · 60,558–60,668 bp · +
ycf4 · NC_063509.1 · 61,107–61,661 bp · +
cemA · NC_063509.1 · 62,309–62,998 bp · +
petA · NC_063509.1 · 63,188–64,150 bp · +
petL · NC_063509.1 · 66,798–66,893 bp · +
petG · NC_063509.1 · 67,068–67,181 bp · +
psaJ · NC_063509.1 · 68,005–68,139 bp · +
rpl33 · NC_063509.1 · 68,619–68,819 bp · +
rps18 · NC_063509.1 · 68,990–69,295 bp · +
rps12 · NC_063509.1 · 140,078–140,871 bp · +
psbB · NC_063509.1 · 73,392–74,918 bp · +
psbT · NC_063509.1 · 75,111–75,218 bp · +
psbH · NC_063509.1 · 75,516–75,737 bp · +
petB · NC_063509.1 · 75,862–77,239 bp · +
petD · NC_063509.1 · 77,428–78,644 bp · +
ycf2 · NC_063509.1 · 87,135–93,995 bp · +
ycf15 · NC_063509.1 · 94,128–94,325 bp · +
trnV-GAC · NC_063509.1 · 100,621–100,692 bp · +
rrn16S · NC_063509.1 · 100,938–102,428 bp · +
trnI · NC_063509.1 · 102,727–103,747 bp · +
trnA-UGC · NC_063509.1 · 103,812–104,698 bp · +
rrn23S · NC_063509.1 · 104,867–107,677 bp · +
rrn4.5S · NC_063509.1 · 107,775–107,877 bp · +
rrn5S · NC_063509.1 · 108,133–108,253 bp · +
trnR-ACG · NC_063509.1 · 108,497–108,570 bp · +
rpl32 · NC_063509.1 · 113,392–113,568 bp · +
trnL-UAG · NC_063509.1 · 114,350–114,429 bp · +
ccsA · NC_063509.1 · 114,513–115,484 bp · +
trnN-GUU · NC_063509.1 · 129,881–129,952 bp · +
rps7 · NC_063509.1 · 140,925–141,392 bp · +
ndhB · NC_063509.1 · 141,667–143,878 bp · +
trnL-CAA · NC_063509.1 · 144,426–144,506 bp · +
trnM-CAU · NC_063509.1 · 152,056–152,129 bp · +
rpl23 · NC_063509.1 · 152,295–152,576 bp · +
rpl2 · NC_063509.1 · 152,595–154,086 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa kochiana
ANNOTATED PLASTOME
NC_063509.1
154,181 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38545 77090 115636 154181 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 427 1485 1059 Locate
trnK-UUU gene − 1739 4311 2573 Locate
matK gene − 2046 3569 1524 Locate
rps16 gene − 5171 6304 1134 Locate
trnQ-UUG gene − 7446 7517 72 Locate
psbK gene + 7851 8036 186 Locate
psbI gene + 8426 8536 111 Locate
trnS-GCU gene − 8654 8741 88 Locate
trnS-CGA gene + 9448 10209 762 Locate
trnR-UCU gene + 10386 10457 72 Locate
atpA gene − 10562 12085 1524 Locate
atpF gene − 12153 13402 1250 Locate
atpH gene − 13770 14015 246 Locate
atpI gene − 15031 15774 744 Locate
rps2 gene − 16005 16715 711 Locate
rpoC2 gene − 16931 21112 4182 Locate
rpoC1 gene − 21267 24092 2826 Locate
rpoB gene − 24119 27331 3213 Locate
trnC-GCA gene + 28507 28577 71 Locate
petN gene + 29409 29498 90 Locate
psbM gene − 30409 30513 105 Locate
trnD-GUC gene − 31050 31123 74 Locate
trnY-GUA gene − 31232 31315 84 Locate
trnE-UUC gene − 31375 31447 73 Locate
trnT-GGU gene + 32004 32075 72 Locate
psbD gene + 33455 34516 1062 Locate
psbC gene + 34464 35885 1422 Locate
trnS-UGA gene − 36127 36219 93 Locate
psbZ gene + 36549 36737 189 Locate
trnG-GCC gene + 37013 37083 71 Locate
trnM-CAU gene − 37235 37308 74 Locate
rps14 gene − 37458 37760 303 Locate
psaB gene − 37883 40087 2205 Locate
psaA gene − 40113 42365 2253 Locate
ycf3 gene − 43079 45028 1950 Locate
trnS-GGA gene + 45864 45950 87 Locate
rps4 gene − 46231 46836 606 Locate
trnT-UGU gene − 47203 47275 73 Locate
trnL-UAA gene + 47948 48520 573 Locate
trnF-GAA gene + 48862 48934 73 Locate
ndhJ gene − 49582 50058 477 Locate
ndhK gene − 50159 50836 678 Locate
ndhC gene − 50890 51252 363 Locate
trnM-CAU gene + 53277 53349 73 Locate
atpE gene − 53557 53958 402 Locate
atpB gene − 53955 55451 1497 Locate
rbcL gene + 56237 57676 1440 Locate
accD gene + 58363 59856 1494 Locate
psaI gene + 60558 60668 111 Locate
ycf4 gene + 61107 61661 555 Locate
cemA gene + 62309 62998 690 Locate
petA gene + 63188 64150 963 Locate
psbJ gene − 65087 65209 123 Locate
psbL gene − 65343 65459 117 Locate
psbF gene − 65483 65602 120 Locate
psbE gene − 65617 65868 252 Locate
petL gene + 66798 66893 96 Locate
petG gene + 67068 67181 114 Locate
trnW-CCA gene − 67304 67377 74 Locate
trnP-UGG gene − 67540 67613 74 Locate
psaJ gene + 68005 68139 135 Locate
rpl33 gene + 68619 68819 201 Locate
rps18 gene + 68990 69295 306 Locate
rpl20 gene − 69531 69917 387 Locate
rps12 gene − 70736 70849 114 Locate
clpP gene − 70983 72930 1948 Locate
psbB gene + 73392 74918 1527 Locate
psbT gene + 75111 75218 108 Locate
psbN gene − 75279 75410 132 Locate
psbH gene + 75516 75737 222 Locate
petB gene + 75862 77239 1378 Locate
petD gene + 77428 78644 1217 Locate
rpoA gene − 78821 79834 1014 Locate
rps11 gene − 79906 80322 417 Locate
rpl36 gene − 80424 80537 114 Locate
infA gene − 80633 80866 234 Locate
rps8 gene − 80991 81395 405 Locate
rpl14 gene − 81569 81937 369 Locate
rpl16 gene − 82064 83360 1297 Locate
rps3 gene − 83503 84165 663 Locate
rpl22 gene − 84175 84612 438 Locate
rps19 gene − 84672 84950 279 Locate
rpl2 gene − 85006 86497 1492 Locate
rpl23 gene − 86516 86797 282 Locate
trnM-CAU gene − 86963 87036 74 Locate
ycf2 gene + 87135 93995 6861 Locate
ycf15 gene + 94128 94325 198 Locate
trnL-CAA gene − 94586 94666 81 Locate
ndhB gene − 95214 97425 2212 Locate
rps7 gene − 97700 98167 468 Locate
rps12 gene − 98221 99014 794 Locate
trnV-GAC gene + 100621 100692 72 Locate
rrn16S gene + 100938 102428 1491 Locate
trnI gene + 102727 103747 1021 Locate
trnA-UGC gene + 103812 104698 887 Locate
rrn23S gene + 104867 107677 2811 Locate
rrn4.5S gene + 107775 107877 103 Locate
rrn5S gene + 108133 108253 121 Locate
trnR-ACG gene + 108497 108570 74 Locate
trnN-GUU gene − 109140 109211 72 Locate
ndhF gene − 110629 112872 2244 Locate
rpl32 gene + 113392 113568 177 Locate
trnL-UAG gene + 114350 114429 80 Locate
ccsA gene + 114513 115484 972 Locate
ndhD gene − 115751 117250 1500 Locate
psaC gene − 117374 117619 246 Locate
ndhE gene − 117870 118175 306 Locate
ndhG gene − 118389 118919 531 Locate
ndhI gene − 119268 119774 507 Locate
ndhA gene − 119850 122026 2177 Locate
ndhH gene − 122028 123209 1182 Locate
rps15 gene − 123306 123578 273 Locate
ycf1 gene − 123960 129551 5592 Locate
trnN-GUU gene + 129881 129952 72 Locate
trnR-ACG gene − 130522 130595 74 Locate
rrn5S gene − 130839 130959 121 Locate
rrn4.5S gene − 131215 131317 103 Locate
rrn23S gene − 131415 134225 2811 Locate
trnA-UGC gene − 134394 135280 887 Locate
trnI gene − 135345 136365 1021 Locate
rrn16S gene − 136664 138154 1491 Locate
trnV-GAC gene − 138400 138471 72 Locate
rps12 gene + 140078 140871 794 Locate
rps7 gene + 140925 141392 468 Locate
ndhB gene + 141667 143878 2212 Locate
trnL-CAA gene + 144426 144506 81 Locate
ycf15 gene − 144767 144964 198 Locate
ycf2 gene − 145097 151957 6861 Locate
trnM-CAU gene + 152056 152129 74 Locate
rpl23 gene + 152295 152576 282 Locate
rpl2 gene + 152595 154086 1492 Locate
Status Available
Accession NC_063509.1
Length 154,181 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources