Callicarpa nudiflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV929844.1 · 2–75 bp · −
psbA · PV929844.1 · 421–1,479 bp · −
trnK-UUU · PV929844.1 · 1,732–4,304 bp · −
matK · PV929844.1 · 2,039–3,562 bp · −
rps16 · PV929844.1 · 5,166–6,299 bp · −
trnQ-UUG · PV929844.1 · 7,440–7,511 bp · −
trnS-GCU · PV929844.1 · 8,649–8,736 bp · −
atpA · PV929844.1 · 10,538–12,061 bp · −
atpF · PV929844.1 · 12,129–13,375 bp · −
atpH · PV929844.1 · 13,742–13,987 bp · −
atpI · PV929844.1 · 15,002–15,745 bp · −
rps2 · PV929844.1 · 15,976–16,686 bp · −
rpoC2 · PV929844.1 · 16,903–21,084 bp · −
rpoC1 · PV929844.1 · 21,239–24,064 bp · −
rpoB · PV929844.1 · 24,091–27,303 bp · −
psbM · PV929844.1 · 30,380–30,484 bp · −
trnD-GUC · PV929844.1 · 31,021–31,094 bp · −
trnY-GUA · PV929844.1 · 31,203–31,286 bp · −
trnE-UUC · PV929844.1 · 31,346–31,418 bp · −
trnS-UGA · PV929844.1 · 36,098–36,190 bp · −
trnM-CAU · PV929844.1 · 37,206–37,279 bp · −
rps14 · PV929844.1 · 37,429–37,731 bp · −
psaB · PV929844.1 · 37,856–40,060 bp · −
psaA · PV929844.1 · 40,086–42,338 bp · −
ycf3 · PV929844.1 · 43,053–45,008 bp · −
rps4 · PV929844.1 · 46,212–46,817 bp · −
trnT-UGU · PV929844.1 · 47,187–47,259 bp · −
ndhJ · PV929844.1 · 49,569–50,045 bp · −
ndhK · PV929844.1 · 50,146–50,823 bp · −
ndhC · PV929844.1 · 50,877–51,239 bp · −
atpE · PV929844.1 · 53,542–53,943 bp · −
atpB · PV929844.1 · 53,940–55,436 bp · −
psbJ · PV929844.1 · 65,078–65,200 bp · −
psbL · PV929844.1 · 65,334–65,450 bp · −
psbF · PV929844.1 · 65,474–65,593 bp · −
psbE · PV929844.1 · 65,608–65,859 bp · −
trnW-CCA · PV929844.1 · 67,295–67,368 bp · −
trnP-UGG · PV929844.1 · 67,531–67,604 bp · −
rpl20 · PV929844.1 · 69,522–69,908 bp · −
rps12 · PV929844.1 · 70,729–70,842 bp · −
rps12 · PV929844.1 · 98,212–99,005 bp · −
clpP · PV929844.1 · 70,976–72,924 bp · −
psbN · PV929844.1 · 75,273–75,404 bp · −
rpoA · PV929844.1 · 78,814–79,827 bp · −
rps11 · PV929844.1 · 79,899–80,315 bp · −
rpl36 · PV929844.1 · 80,417–80,530 bp · −
infA · PV929844.1 · 80,626–80,859 bp · −
rps8 · PV929844.1 · 80,984–81,388 bp · −
rpl14 · PV929844.1 · 81,561–81,929 bp · −
rpl16 · PV929844.1 · 82,056–83,350 bp · −
rps3 · PV929844.1 · 83,493–84,155 bp · −
rpl22 · PV929844.1 · 84,165–84,602 bp · −
rps19 · PV929844.1 · 84,662–84,940 bp · −
rpl2 · PV929844.1 · 84,997–86,488 bp · −
rpl23 · PV929844.1 · 86,507–86,788 bp · −
trnM-CAU · PV929844.1 · 86,954–87,027 bp · −
trnL-CAA · PV929844.1 · 94,577–94,657 bp · −
ndhB · PV929844.1 · 95,205–97,416 bp · −
rps7 · PV929844.1 · 97,691–98,158 bp · −
trnN-GUU · PV929844.1 · 109,132–109,203 bp · −
ccsA · PV929844.1 · 123,609–124,580 bp · −
trnL-UAG · PV929844.1 · 124,664–124,743 bp · −
rpl32 · PV929844.1 · 125,525–125,689 bp · −
trnR-ACG · PV929844.1 · 130,498–130,571 bp · −
rrn5S · PV929844.1 · 130,815–130,935 bp · −
rrn4.5S · PV929844.1 · 131,191–131,293 bp · −
rrn23S · PV929844.1 · 131,391–134,201 bp · −
trnA-UGC · PV929844.1 · 134,370–135,256 bp · −
trnI · PV929844.1 · 135,321–136,341 bp · −
rrn16S · PV929844.1 · 136,640–138,130 bp · −
trnV-GAC · PV929844.1 · 138,376–138,447 bp · −
ycf15 · PV929844.1 · 144,743–144,940 bp · −
ycf2 · PV929844.1 · 145,073–151,933 bp · −
psbK · PV929844.1 · 7,845–8,030 bp · +
psbI · PV929844.1 · 8,420–8,530 bp · +
trnS-CGA · PV929844.1 · 9,424–10,185 bp · +
trnR-UCU · PV929844.1 · 10,362–10,433 bp · +
trnC-GCA · PV929844.1 · 28,479–28,549 bp · +
petN · PV929844.1 · 29,381–29,470 bp · +
trnT-GGU · PV929844.1 · 31,975–32,046 bp · +
psbD · PV929844.1 · 33,426–34,487 bp · +
psbC · PV929844.1 · 34,435–35,856 bp · +
psbZ · PV929844.1 · 36,520–36,708 bp · +
trnG-GCC · PV929844.1 · 36,984–37,054 bp · +
trnS-GGA · PV929844.1 · 45,845–45,931 bp · +
trnL-UAA · PV929844.1 · 47,932–48,504 bp · +
trnF-GAA · PV929844.1 · 48,846–48,918 bp · +
trnM-CAU · PV929844.1 · 53,262–53,334 bp · +
rbcL · PV929844.1 · 56,222–57,661 bp · +
accD · PV929844.1 · 58,354–59,847 bp · +
psaI · PV929844.1 · 60,549–60,659 bp · +
ycf4 · PV929844.1 · 61,098–61,652 bp · +
cemA · PV929844.1 · 62,300–62,989 bp · +
petA · PV929844.1 · 63,179–64,141 bp · +
petL · PV929844.1 · 66,789–66,884 bp · +
petG · PV929844.1 · 67,059–67,172 bp · +
psaJ · PV929844.1 · 67,996–68,130 bp · +
rpl33 · PV929844.1 · 68,610–68,810 bp · +
rps18 · PV929844.1 · 68,981–69,286 bp · +
rps12 · PV929844.1 · 140,054–140,847 bp · +
psbB · PV929844.1 · 73,386–74,912 bp · +
psbT · PV929844.1 · 75,105–75,212 bp · +
psbH · PV929844.1 · 75,510–75,731 bp · +
petB · PV929844.1 · 75,856–77,232 bp · +
petD · PV929844.1 · 77,421–78,637 bp · +
ycf2 · PV929844.1 · 87,126–93,986 bp · +
ycf15 · PV929844.1 · 94,119–94,316 bp · +
trnV-GAC · PV929844.1 · 100,612–100,683 bp · +
rrn16S · PV929844.1 · 100,929–102,419 bp · +
trnI · PV929844.1 · 102,718–103,738 bp · +
trnA-UGC · PV929844.1 · 103,803–104,689 bp · +
rrn23S · PV929844.1 · 104,858–107,668 bp · +
rrn4.5S · PV929844.1 · 107,766–107,868 bp · +
rrn5S · PV929844.1 · 108,124–108,244 bp · +
trnR-ACG · PV929844.1 · 108,488–108,561 bp · +
ycf1 · PV929844.1 · 109,533–115,124 bp · +
rps15 · PV929844.1 · 115,506–115,778 bp · +
ndhH · PV929844.1 · 115,875–117,056 bp · +
ndhA · PV929844.1 · 117,058–119,242 bp · +
ndhI · PV929844.1 · 119,318–119,824 bp · +
ndhG · PV929844.1 · 120,173–120,703 bp · +
ndhE · PV929844.1 · 120,917–121,222 bp · +
psaC · PV929844.1 · 121,473–121,718 bp · +
ndhD · PV929844.1 · 121,846–123,342 bp · +
ndhF · PV929844.1 · 126,208–128,451 bp · +
trnN-GUU · PV929844.1 · 129,856–129,927 bp · +
rps7 · PV929844.1 · 140,901–141,368 bp · +
ndhB · PV929844.1 · 141,643–143,854 bp · +
trnL-CAA · PV929844.1 · 144,402–144,482 bp · +
trnM-CAU · PV929844.1 · 152,032–152,105 bp · +
rpl23 · PV929844.1 · 152,271–152,552 bp · +
rpl2 · PV929844.1 · 152,571–154,062 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa nudiflora
ANNOTATED PLASTOME
PV929844.1
154,160 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38540 77080 115620 154160 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rps15 ndhH ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ccsA trnL-UAG rpl32 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 421 1479 1059 Locate
trnK-UUU gene − 1732 4304 2573 Locate
matK gene − 2039 3562 1524 Locate
rps16 gene − 5166 6299 1134 Locate
trnQ-UUG gene − 7440 7511 72 Locate
psbK gene + 7845 8030 186 Locate
psbI gene + 8420 8530 111 Locate
trnS-GCU gene − 8649 8736 88 Locate
trnS-CGA gene + 9424 10185 762 Locate
trnR-UCU gene + 10362 10433 72 Locate
atpA gene − 10538 12061 1524 Locate
atpF gene − 12129 13375 1247 Locate
atpH gene − 13742 13987 246 Locate
atpI gene − 15002 15745 744 Locate
rps2 gene − 15976 16686 711 Locate
rpoC2 gene − 16903 21084 4182 Locate
rpoC1 gene − 21239 24064 2826 Locate
rpoB gene − 24091 27303 3213 Locate
trnC-GCA gene + 28479 28549 71 Locate
petN gene + 29381 29470 90 Locate
psbM gene − 30380 30484 105 Locate
trnD-GUC gene − 31021 31094 74 Locate
trnY-GUA gene − 31203 31286 84 Locate
trnE-UUC gene − 31346 31418 73 Locate
trnT-GGU gene + 31975 32046 72 Locate
psbD gene + 33426 34487 1062 Locate
psbC gene + 34435 35856 1422 Locate
trnS-UGA gene − 36098 36190 93 Locate
psbZ gene + 36520 36708 189 Locate
trnG-GCC gene + 36984 37054 71 Locate
trnM-CAU gene − 37206 37279 74 Locate
rps14 gene − 37429 37731 303 Locate
psaB gene − 37856 40060 2205 Locate
psaA gene − 40086 42338 2253 Locate
ycf3 gene − 43053 45008 1956 Locate
trnS-GGA gene + 45845 45931 87 Locate
rps4 gene − 46212 46817 606 Locate
trnT-UGU gene − 47187 47259 73 Locate
trnL-UAA gene + 47932 48504 573 Locate
trnF-GAA gene + 48846 48918 73 Locate
ndhJ gene − 49569 50045 477 Locate
ndhK gene − 50146 50823 678 Locate
ndhC gene − 50877 51239 363 Locate
trnM-CAU gene + 53262 53334 73 Locate
atpE gene − 53542 53943 402 Locate
atpB gene − 53940 55436 1497 Locate
rbcL gene + 56222 57661 1440 Locate
accD gene + 58354 59847 1494 Locate
psaI gene + 60549 60659 111 Locate
ycf4 gene + 61098 61652 555 Locate
cemA gene + 62300 62989 690 Locate
petA gene + 63179 64141 963 Locate
psbJ gene − 65078 65200 123 Locate
psbL gene − 65334 65450 117 Locate
psbF gene − 65474 65593 120 Locate
psbE gene − 65608 65859 252 Locate
petL gene + 66789 66884 96 Locate
petG gene + 67059 67172 114 Locate
trnW-CCA gene − 67295 67368 74 Locate
trnP-UGG gene − 67531 67604 74 Locate
psaJ gene + 67996 68130 135 Locate
rpl33 gene + 68610 68810 201 Locate
rps18 gene + 68981 69286 306 Locate
rpl20 gene − 69522 69908 387 Locate
rps12 gene − 70729 70842 114 Locate
clpP gene − 70976 72924 1949 Locate
psbB gene + 73386 74912 1527 Locate
psbT gene + 75105 75212 108 Locate
psbN gene − 75273 75404 132 Locate
psbH gene + 75510 75731 222 Locate
petB gene + 75856 77232 1377 Locate
petD gene + 77421 78637 1217 Locate
rpoA gene − 78814 79827 1014 Locate
rps11 gene − 79899 80315 417 Locate
rpl36 gene − 80417 80530 114 Locate
infA gene − 80626 80859 234 Locate
rps8 gene − 80984 81388 405 Locate
rpl14 gene − 81561 81929 369 Locate
rpl16 gene − 82056 83350 1295 Locate
rps3 gene − 83493 84155 663 Locate
rpl22 gene − 84165 84602 438 Locate
rps19 gene − 84662 84940 279 Locate
rpl2 gene − 84997 86488 1492 Locate
rpl23 gene − 86507 86788 282 Locate
trnM-CAU gene − 86954 87027 74 Locate
ycf2 gene + 87126 93986 6861 Locate
ycf15 gene + 94119 94316 198 Locate
trnL-CAA gene − 94577 94657 81 Locate
ndhB gene − 95205 97416 2212 Locate
rps7 gene − 97691 98158 468 Locate
rps12 gene − 98212 99005 794 Locate
trnV-GAC gene + 100612 100683 72 Locate
rrn16S gene + 100929 102419 1491 Locate
trnI gene + 102718 103738 1021 Locate
trnA-UGC gene + 103803 104689 887 Locate
rrn23S gene + 104858 107668 2811 Locate
rrn4.5S gene + 107766 107868 103 Locate
rrn5S gene + 108124 108244 121 Locate
trnR-ACG gene + 108488 108561 74 Locate
trnN-GUU gene − 109132 109203 72 Locate
ycf1 gene + 109533 115124 5592 Locate
rps15 gene + 115506 115778 273 Locate
ndhH gene + 115875 117056 1182 Locate
ndhA gene + 117058 119242 2185 Locate
ndhI gene + 119318 119824 507 Locate
ndhG gene + 120173 120703 531 Locate
ndhE gene + 120917 121222 306 Locate
psaC gene + 121473 121718 246 Locate
ndhD gene + 121846 123342 1497 Locate
ccsA gene − 123609 124580 972 Locate
trnL-UAG gene − 124664 124743 80 Locate
rpl32 gene − 125525 125689 165 Locate
ndhF gene + 126208 128451 2244 Locate
trnN-GUU gene + 129856 129927 72 Locate
trnR-ACG gene − 130498 130571 74 Locate
rrn5S gene − 130815 130935 121 Locate
rrn4.5S gene − 131191 131293 103 Locate
rrn23S gene − 131391 134201 2811 Locate
trnA-UGC gene − 134370 135256 887 Locate
trnI gene − 135321 136341 1021 Locate
rrn16S gene − 136640 138130 1491 Locate
trnV-GAC gene − 138376 138447 72 Locate
rps12 gene + 140054 140847 794 Locate
rps7 gene + 140901 141368 468 Locate
ndhB gene + 141643 143854 2212 Locate
trnL-CAA gene + 144402 144482 81 Locate
ycf15 gene − 144743 144940 198 Locate
ycf2 gene − 145073 151933 6861 Locate
trnM-CAU gene + 152032 152105 74 Locate
rpl23 gene + 152271 152552 282 Locate
rpl2 gene + 152571 154062 1492 Locate
Status Available
Accession PV929844.1
Length 154,160 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources