Callicarpa siongsaiensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_059786.1 · 4–77 bp · −
psbA · NC_059786.1 · 434–1,492 bp · −
trnK-UUU · NC_059786.1 · 1,745–4,317 bp · −
matK · NC_059786.1 · 2,052–3,575 bp · −
rps16 · NC_059786.1 · 5,128–6,261 bp · −
trnQ-UUG · NC_059786.1 · 7,418–7,489 bp · −
trnS-GCU · NC_059786.1 · 8,628–8,715 bp · −
atpA · NC_059786.1 · 10,536–12,059 bp · −
atpF · NC_059786.1 · 12,127–13,373 bp · −
atpH · NC_059786.1 · 13,742–13,987 bp · −
atpI · NC_059786.1 · 15,003–15,746 bp · −
rps2 · NC_059786.1 · 15,977–16,687 bp · −
rpoC2 · NC_059786.1 · 16,904–21,085 bp · −
rpoC1 · NC_059786.1 · 21,240–24,070 bp · −
rpoB · NC_059786.1 · 24,097–27,309 bp · −
psbM · NC_059786.1 · 30,399–30,503 bp · −
trnD-GUC · NC_059786.1 · 31,040–31,113 bp · −
trnY-GUA · NC_059786.1 · 31,222–31,305 bp · −
trnE-UUC · NC_059786.1 · 31,365–31,437 bp · −
trnS-UGA · NC_059786.1 · 36,117–36,209 bp · −
trnM-CAU · NC_059786.1 · 37,225–37,298 bp · −
rps14 · NC_059786.1 · 37,448–37,750 bp · −
psaB · NC_059786.1 · 37,873–40,077 bp · −
psaA · NC_059786.1 · 40,103–42,355 bp · −
ycf3 · NC_059786.1 · 43,070–45,024 bp · −
rps4 · NC_059786.1 · 46,225–46,830 bp · −
trnT-UGU · NC_059786.1 · 47,198–47,270 bp · −
ndhJ · NC_059786.1 · 49,578–50,054 bp · −
ndhK · NC_059786.1 · 50,155–50,832 bp · −
ndhC · NC_059786.1 · 50,886–51,248 bp · −
atpE · NC_059786.1 · 53,552–53,953 bp · −
atpB · NC_059786.1 · 53,950–55,446 bp · −
psbJ · NC_059786.1 · 65,080–65,202 bp · −
psbL · NC_059786.1 · 65,336–65,452 bp · −
psbF · NC_059786.1 · 65,476–65,595 bp · −
psbE · NC_059786.1 · 65,610–65,861 bp · −
trnW-CCA · NC_059786.1 · 67,298–67,371 bp · −
trnP-UGG · NC_059786.1 · 67,534–67,607 bp · −
rpl20 · NC_059786.1 · 69,525–69,911 bp · −
rps12 · NC_059786.1 · 70,733–70,846 bp · −
rps12 · NC_059786.1 · 98,214–99,007 bp · −
clpP · NC_059786.1 · 70,980–72,928 bp · −
psbN · NC_059786.1 · 75,277–75,408 bp · −
rpoA · NC_059786.1 · 78,818–79,831 bp · −
rps11 · NC_059786.1 · 79,903–80,319 bp · −
rpl36 · NC_059786.1 · 80,421–80,534 bp · −
infA · NC_059786.1 · 80,630–80,863 bp · −
rps8 · NC_059786.1 · 80,988–81,392 bp · −
rpl14 · NC_059786.1 · 81,564–81,932 bp · −
rpl16 · NC_059786.1 · 82,059–83,353 bp · −
rps3 · NC_059786.1 · 83,496–84,158 bp · −
rpl22 · NC_059786.1 · 84,168–84,605 bp · −
rps19 · NC_059786.1 · 84,665–84,943 bp · −
rpl2 · NC_059786.1 · 84,999–86,490 bp · −
rpl23 · NC_059786.1 · 86,509–86,790 bp · −
trnM-CAU · NC_059786.1 · 86,956–87,029 bp · −
trnL-CAA · NC_059786.1 · 94,579–94,659 bp · −
ndhB · NC_059786.1 · 95,207–97,418 bp · −
rps7 · NC_059786.1 · 97,693–98,160 bp · −
trnN-GUU · NC_059786.1 · 109,134–109,205 bp · −
ndhF · NC_059786.1 · 110,610–112,853 bp · −
ndhD · NC_059786.1 · 115,609–117,261 bp · −
psaC · NC_059786.1 · 117,355–117,600 bp · −
ndhE · NC_059786.1 · 117,851–118,156 bp · −
ndhG · NC_059786.1 · 118,370–118,900 bp · −
ndhI · NC_059786.1 · 119,249–119,755 bp · −
ndhA · NC_059786.1 · 119,831–122,015 bp · −
ndhH · NC_059786.1 · 122,017–123,198 bp · −
rps15 · NC_059786.1 · 123,295–123,567 bp · −
ycf1 · NC_059786.1 · 123,949–129,513 bp · −
trnR-ACG · NC_059786.1 · 130,484–130,557 bp · −
rrn5S · NC_059786.1 · 130,801–130,921 bp · −
rrn4.5S · NC_059786.1 · 131,177–131,279 bp · −
rrn23S · NC_059786.1 · 131,377–134,187 bp · −
trnA-UGC · NC_059786.1 · 134,356–135,243 bp · −
trnI · NC_059786.1 · 135,308–136,328 bp · −
rrn16S · NC_059786.1 · 136,627–138,117 bp · −
trnV-GAC · NC_059786.1 · 138,363–138,434 bp · −
ycf15 · NC_059786.1 · 144,730–144,927 bp · −
ycf2 · NC_059786.1 · 145,060–151,920 bp · −
psbK · NC_059786.1 · 7,823–8,008 bp · +
psbI · NC_059786.1 · 8,399–8,509 bp · +
trnS-CGA · NC_059786.1 · 9,422–10,183 bp · +
trnR-UCU · NC_059786.1 · 10,360–10,431 bp · +
trnC-GCA · NC_059786.1 · 28,485–28,555 bp · +
petN · NC_059786.1 · 29,387–29,476 bp · +
trnT-GGU · NC_059786.1 · 31,994–32,065 bp · +
psbD · NC_059786.1 · 33,445–34,506 bp · +
psbC · NC_059786.1 · 34,454–35,875 bp · +
psbZ · NC_059786.1 · 36,539–36,727 bp · +
trnG-GCC · NC_059786.1 · 37,003–37,073 bp · +
trnS-GGA · NC_059786.1 · 45,858–45,944 bp · +
trnL-UAA · NC_059786.1 · 47,943–48,515 bp · +
trnF-GAA · NC_059786.1 · 48,857–48,929 bp · +
trnM-CAU · NC_059786.1 · 53,272–53,344 bp · +
rbcL · NC_059786.1 · 56,232–57,671 bp · +
accD · NC_059786.1 · 58,357–59,850 bp · +
psaI · NC_059786.1 · 60,552–60,662 bp · +
ycf4 · NC_059786.1 · 61,101–61,655 bp · +
cemA · NC_059786.1 · 62,303–62,992 bp · +
petA · NC_059786.1 · 63,182–64,144 bp · +
petL · NC_059786.1 · 66,792–66,887 bp · +
petG · NC_059786.1 · 67,062–67,175 bp · +
psaJ · NC_059786.1 · 67,999–68,133 bp · +
rpl33 · NC_059786.1 · 68,613–68,813 bp · +
rps18 · NC_059786.1 · 68,984–69,289 bp · +
rps12 · NC_059786.1 · 140,041–140,834 bp · +
psbB · NC_059786.1 · 73,390–74,916 bp · +
psbT · NC_059786.1 · 75,109–75,216 bp · +
psbH · NC_059786.1 · 75,514–75,735 bp · +
petB · NC_059786.1 · 75,860–77,236 bp · +
petD · NC_059786.1 · 77,425–78,641 bp · +
ycf2 · NC_059786.1 · 87,128–93,988 bp · +
ycf15 · NC_059786.1 · 94,121–94,318 bp · +
trnV-GAC · NC_059786.1 · 100,614–100,685 bp · +
rrn16S · NC_059786.1 · 100,931–102,421 bp · +
trnI · NC_059786.1 · 102,720–103,740 bp · +
trnA-UGC · NC_059786.1 · 103,805–104,692 bp · +
rrn23S · NC_059786.1 · 104,861–107,671 bp · +
rrn4.5S · NC_059786.1 · 107,769–107,871 bp · +
rrn5S · NC_059786.1 · 108,127–108,247 bp · +
trnR-ACG · NC_059786.1 · 108,491–108,564 bp · +
rpl32 · NC_059786.1 · 113,372–113,548 bp · +
trnL-UAG · NC_059786.1 · 114,330–114,409 bp · +
ccsA · NC_059786.1 · 114,494–115,465 bp · +
trnN-GUU · NC_059786.1 · 129,843–129,914 bp · +
rps7 · NC_059786.1 · 140,888–141,355 bp · +
ndhB · NC_059786.1 · 141,630–143,841 bp · +
trnL-CAA · NC_059786.1 · 144,389–144,469 bp · +
trnM-CAU · NC_059786.1 · 152,019–152,092 bp · +
rpl23 · NC_059786.1 · 152,258–152,539 bp · +
rpl2 · NC_059786.1 · 152,558–154,049 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa siongsaiensis
ANNOTATED PLASTOME
NC_059786.1
154,144 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38536 77072 115608 154144 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 434 1492 1059 Locate
trnK-UUU gene − 1745 4317 2573 Locate
matK gene − 2052 3575 1524 Locate
rps16 gene − 5128 6261 1134 Locate
trnQ-UUG gene − 7418 7489 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8399 8509 111 Locate
trnS-GCU gene − 8628 8715 88 Locate
trnS-CGA gene + 9422 10183 762 Locate
trnR-UCU gene + 10360 10431 72 Locate
atpA gene − 10536 12059 1524 Locate
atpF gene − 12127 13373 1247 Locate
atpH gene − 13742 13987 246 Locate
atpI gene − 15003 15746 744 Locate
rps2 gene − 15977 16687 711 Locate
rpoC2 gene − 16904 21085 4182 Locate
rpoC1 gene − 21240 24070 2831 Locate
rpoB gene − 24097 27309 3213 Locate
trnC-GCA gene + 28485 28555 71 Locate
petN gene + 29387 29476 90 Locate
psbM gene − 30399 30503 105 Locate
trnD-GUC gene − 31040 31113 74 Locate
trnY-GUA gene − 31222 31305 84 Locate
trnE-UUC gene − 31365 31437 73 Locate
trnT-GGU gene + 31994 32065 72 Locate
psbD gene + 33445 34506 1062 Locate
psbC gene + 34454 35875 1422 Locate
trnS-UGA gene − 36117 36209 93 Locate
psbZ gene + 36539 36727 189 Locate
trnG-GCC gene + 37003 37073 71 Locate
trnM-CAU gene − 37225 37298 74 Locate
rps14 gene − 37448 37750 303 Locate
psaB gene − 37873 40077 2205 Locate
psaA gene − 40103 42355 2253 Locate
ycf3 gene − 43070 45024 1955 Locate
trnS-GGA gene + 45858 45944 87 Locate
rps4 gene − 46225 46830 606 Locate
trnT-UGU gene − 47198 47270 73 Locate
trnL-UAA gene + 47943 48515 573 Locate
trnF-GAA gene + 48857 48929 73 Locate
ndhJ gene − 49578 50054 477 Locate
ndhK gene − 50155 50832 678 Locate
ndhC gene − 50886 51248 363 Locate
trnM-CAU gene + 53272 53344 73 Locate
atpE gene − 53552 53953 402 Locate
atpB gene − 53950 55446 1497 Locate
rbcL gene + 56232 57671 1440 Locate
accD gene + 58357 59850 1494 Locate
psaI gene + 60552 60662 111 Locate
ycf4 gene + 61101 61655 555 Locate
cemA gene + 62303 62992 690 Locate
petA gene + 63182 64144 963 Locate
psbJ gene − 65080 65202 123 Locate
psbL gene − 65336 65452 117 Locate
psbF gene − 65476 65595 120 Locate
psbE gene − 65610 65861 252 Locate
petL gene + 66792 66887 96 Locate
petG gene + 67062 67175 114 Locate
trnW-CCA gene − 67298 67371 74 Locate
trnP-UGG gene − 67534 67607 74 Locate
psaJ gene + 67999 68133 135 Locate
rpl33 gene + 68613 68813 201 Locate
rps18 gene + 68984 69289 306 Locate
rpl20 gene − 69525 69911 387 Locate
rps12 gene − 70733 70846 114 Locate
clpP gene − 70980 72928 1949 Locate
psbB gene + 73390 74916 1527 Locate
psbT gene + 75109 75216 108 Locate
psbN gene − 75277 75408 132 Locate
psbH gene + 75514 75735 222 Locate
petB gene + 75860 77236 1377 Locate
petD gene + 77425 78641 1217 Locate
rpoA gene − 78818 79831 1014 Locate
rps11 gene − 79903 80319 417 Locate
rpl36 gene − 80421 80534 114 Locate
infA gene − 80630 80863 234 Locate
rps8 gene − 80988 81392 405 Locate
rpl14 gene − 81564 81932 369 Locate
rpl16 gene − 82059 83353 1295 Locate
rps3 gene − 83496 84158 663 Locate
rpl22 gene − 84168 84605 438 Locate
rps19 gene − 84665 84943 279 Locate
rpl2 gene − 84999 86490 1492 Locate
rpl23 gene − 86509 86790 282 Locate
trnM-CAU gene − 86956 87029 74 Locate
ycf2 gene + 87128 93988 6861 Locate
ycf15 gene + 94121 94318 198 Locate
trnL-CAA gene − 94579 94659 81 Locate
ndhB gene − 95207 97418 2212 Locate
rps7 gene − 97693 98160 468 Locate
rps12 gene − 98214 99007 794 Locate
trnV-GAC gene + 100614 100685 72 Locate
rrn16S gene + 100931 102421 1491 Locate
trnI gene + 102720 103740 1021 Locate
trnA-UGC gene + 103805 104692 888 Locate
rrn23S gene + 104861 107671 2811 Locate
rrn4.5S gene + 107769 107871 103 Locate
rrn5S gene + 108127 108247 121 Locate
trnR-ACG gene + 108491 108564 74 Locate
trnN-GUU gene − 109134 109205 72 Locate
ndhF gene − 110610 112853 2244 Locate
rpl32 gene + 113372 113548 177 Locate
trnL-UAG gene + 114330 114409 80 Locate
ccsA gene + 114494 115465 972 Locate
ndhD gene − 115609 117261 1653 Locate
psaC gene − 117355 117600 246 Locate
ndhE gene − 117851 118156 306 Locate
ndhG gene − 118370 118900 531 Locate
ndhI gene − 119249 119755 507 Locate
ndhA gene − 119831 122015 2185 Locate
ndhH gene − 122017 123198 1182 Locate
rps15 gene − 123295 123567 273 Locate
ycf1 gene − 123949 129513 5565 Locate
trnN-GUU gene + 129843 129914 72 Locate
trnR-ACG gene − 130484 130557 74 Locate
rrn5S gene − 130801 130921 121 Locate
rrn4.5S gene − 131177 131279 103 Locate
rrn23S gene − 131377 134187 2811 Locate
trnA-UGC gene − 134356 135243 888 Locate
trnI gene − 135308 136328 1021 Locate
rrn16S gene − 136627 138117 1491 Locate
trnV-GAC gene − 138363 138434 72 Locate
rps12 gene + 140041 140834 794 Locate
rps7 gene + 140888 141355 468 Locate
ndhB gene + 141630 143841 2212 Locate
trnL-CAA gene + 144389 144469 81 Locate
ycf15 gene − 144730 144927 198 Locate
ycf2 gene − 145060 151920 6861 Locate
trnM-CAU gene + 152019 152092 74 Locate
rpl23 gene + 152258 152539 282 Locate
rpl2 gene + 152558 154049 1492 Locate
Status Available
Accession NC_059786.1
Length 154,144 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources