Clerodendranthus spicatus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnS-GCU · NC_056393.1 · 19,309–19,396 bp · −
psbI · NC_056393.1 · 19,550–19,660 bp · −
psbK · NC_056393.1 · 20,047–20,232 bp · −
trnQ-UUG · NC_056393.1 · 20,618–20,689 bp · −
trnK-UUU · NC_056393.1 · 23,290–25,868 bp · −
trnH-GUG · NC_056393.1 · 27,455–27,528 bp · −
rpl2 · NC_056393.1 · 27,644–29,122 bp · −
rpl23 · NC_056393.1 · 29,141–29,422 bp · −
trnI-CAU · NC_056393.1 · 29,588–29,661 bp · −
trnL-CAA · NC_056393.1 · 37,183–37,263 bp · −
ndhB · NC_056393.1 · 37,833–40,040 bp · −
rps7 · NC_056393.1 · 40,296–40,763 bp · −
rps12 · NC_056393.1 · 110,585–110,688 bp · −
rps12 · NC_056393.1 · 41,379–41,587 bp · −
rps12 · NC_056393.1 · 40,817–40,842 bp · −
rrn4.5S · NC_056393.1 · 50,381–50,645 bp · −
trnN-GUU · NC_056393.1 · 51,750–51,821 bp · −
ndhF · NC_056393.1 · 53,187–55,418 bp · −
ndhD · NC_056393.1 · 58,208–59,701 bp · −
psaC · NC_056393.1 · 59,828–60,073 bp · −
ndhE · NC_056393.1 · 60,328–60,633 bp · −
ndhG · NC_056393.1 · 60,842–61,372 bp · −
ndhI · NC_056393.1 · 61,735–62,241 bp · −
ndhA · NC_056393.1 · 62,322–64,424 bp · −
ndhH · NC_056393.1 · 64,426–65,607 bp · −
rps15 · NC_056393.1 · 65,722–65,994 bp · −
ycf1 · NC_056393.1 · 66,421–69,831 bp · −
trnR-ACG · NC_056393.1 · 72,960–73,033 bp · −
rrn5S · NC_056393.1 · 73,267–73,397 bp · −
rrn23S · NC_056393.1 · 73,854–76,664 bp · −
trnA-UGC · NC_056393.1 · 76,829–77,706 bp · −
trnI-GAU · NC_056393.1 · 77,771–78,788 bp · −
rrn16S · NC_056393.1 · 79,086–80,576 bp · −
trnV-GAC · NC_056393.1 · 80,797–80,868 bp · −
ycf2 · NC_056393.1 · 87,553–94,380 bp · −
petD · NC_056393.1 · 102,847–103,371 bp · −
petB · NC_056393.1 · 104,219–105,583 bp · −
psbH · NC_056393.1 · 105,726–105,944 bp · −
psbT · NC_056393.1 · 106,247–106,348 bp · −
psbB · NC_056393.1 · 106,541–108,067 bp · −
rps18 · NC_056393.1 · 112,025–112,333 bp · −
rpl33 · NC_056393.1 · 112,497–112,706 bp · −
psaJ · NC_056393.1 · 113,146–113,280 bp · −
trnP-UGG · NC_056393.1 · 113,574–113,647 bp · −
trnW-CCA · NC_056393.1 · 113,816–113,889 bp · −
petG · NC_056393.1 · 114,002–114,121 bp · −
petL · NC_056393.1 · 114,220–114,330 bp · −
petA · NC_056393.1 · 116,877–117,839 bp · −
cemA · NC_056393.1 · 118,054–118,758 bp · −
ycf4 · NC_056393.1 · 119,396–119,950 bp · −
psaI · NC_056393.1 · 120,394–120,522 bp · −
accD · NC_056393.1 · 121,233–122,795 bp · −
rbcL · NC_056393.1 · 123,407–124,861 bp · −
trnT-UGU · NC_056393.1 · 133,515–133,587 bp · −
trnM-CAU · NC_056393.1 · 143,572–143,645 bp · −
psbZ · NC_056393.1 · 144,101–144,289 bp · −
trnS-UGA · NC_056393.1 · 144,655–144,747 bp · −
psbC · NC_056393.1 · 144,948–146,369 bp · −
psbD · NC_056393.1 · 146,317–147,378 bp · −
trnE-UUC · NC_056393.1 · 149,360–149,432 bp · −
trnY-GUA · NC_056393.1 · 149,516–149,599 bp · −
trnD-GUC · NC_056393.1 · 149,717–149,790 bp · −
petN · NC_056393.1 · 151,395–151,484 bp · −
rpoB · NC_056393.1 · 754–3,966 bp · +
rpoC1 · NC_056393.1 · 3,993–6,799 bp · +
rpoC2 · NC_056393.1 · 6,976–11,133 bp · +
rps2 · NC_056393.1 · 11,342–12,052 bp · +
atpI · NC_056393.1 · 12,279–13,022 bp · +
atpH · NC_056393.1 · 14,056–14,301 bp · +
atpF · NC_056393.1 · 14,575–15,815 bp · +
atpA · NC_056393.1 · 15,917–17,440 bp · +
trnR-UCU · NC_056393.1 · 17,545–17,616 bp · +
trnT-CGU · NC_056393.1 · 17,807–18,570 bp · +
rps16 · NC_056393.1 · 21,630–22,763 bp · +
matK · NC_056393.1 · 24,029–25,549 bp · +
psbA · NC_056393.1 · 26,097–27,155 bp · +
ycf2 · NC_056393.1 · 29,756–36,583 bp · +
trnV-GAC · NC_056393.1 · 43,268–43,339 bp · +
rrn16S · NC_056393.1 · 43,560–45,050 bp · +
trnI-GAU · NC_056393.1 · 45,348–46,365 bp · +
trnA-UGC · NC_056393.1 · 46,430–47,307 bp · +
rrn23S · NC_056393.1 · 47,472–50,282 bp · +
rrn5S · NC_056393.1 · 50,739–50,869 bp · +
trnR-ACG · NC_056393.1 · 51,103–51,176 bp · +
ycf1 · NC_056393.1 · 52,163–53,293 bp · +
trnL-UAG · NC_056393.1 · 56,828–56,907 bp · +
ccsA · NC_056393.1 · 57,024–57,995 bp · +
trnN-GUU · NC_056393.1 · 72,315–72,386 bp · +
rrn4.5S · NC_056393.1 · 73,491–73,755 bp · +
rps12 · NC_056393.1 · 82,528–82,757 bp · +
rps12 · NC_056393.1 · 83,294–83,319 bp · +
rps7 · NC_056393.1 · 83,373–83,840 bp · +
ndhB · NC_056393.1 · 84,096–86,303 bp · +
trnL-CAA · NC_056393.1 · 86,873–86,953 bp · +
trnI-CAU · NC_056393.1 · 94,475–94,548 bp · +
rpl23 · NC_056393.1 · 94,714–94,995 bp · +
rpl2 · NC_056393.1 · 95,014–96,492 bp · +
rps19 · NC_056393.1 · 96,560–96,838 bp · +
rpl22 · NC_056393.1 · 96,920–97,393 bp · +
rps3 · NC_056393.1 · 97,378–98,034 bp · +
rpl16 · NC_056393.1 · 98,184–99,412 bp · +
rpl14 · NC_056393.1 · 99,545–99,913 bp · +
rps8 · NC_056393.1 · 100,085–100,489 bp · +
infA · NC_056393.1 · 100,616–100,849 bp · +
rpl36 · NC_056393.1 · 100,945–101,058 bp · +
rps11 · NC_056393.1 · 101,168–101,584 bp · +
rpoA · NC_056393.1 · 101,663–102,670 bp · +
psbN · NC_056393.1 · 106,050–106,181 bp · +
clpP · NC_056393.1 · 108,525–110,456 bp · +
rpl20 · NC_056393.1 · 111,415–111,801 bp · +
psbE · NC_056393.1 · 115,075–115,326 bp · +
psbF · NC_056393.1 · 115,317–115,460 bp · +
psbL · NC_056393.1 · 115,484–115,600 bp · +
psbJ · NC_056393.1 · 115,716–115,868 bp · +
atpB · NC_056393.1 · 125,661–127,151 bp · +
atpE · NC_056393.1 · 127,169–127,549 bp · +
trnM-CAU · NC_056393.1 · 127,800–127,872 bp · +
ndhC · NC_056393.1 · 129,547–129,885 bp · +
ndhK · NC_056393.1 · 129,945–130,613 bp · +
ndhJ · NC_056393.1 · 130,724–131,200 bp · +
trnF-GAA · NC_056393.1 · 131,915–131,987 bp · +
trnL-UAA · NC_056393.1 · 132,270–132,826 bp · +
rps4 · NC_056393.1 · 133,953–134,558 bp · +
trnS-GGA · NC_056393.1 · 134,875–134,961 bp · +
ycf3 · NC_056393.1 · 135,802–137,720 bp · +
psaA · NC_056393.1 · 138,502–140,748 bp · +
psaB · NC_056393.1 · 140,774–142,978 bp · +
rps14 · NC_056393.1 · 143,101–143,403 bp · +
trnG-GCC · NC_056393.1 · 143,818–143,888 bp · +
trnT-GGU · NC_056393.1 · 148,687–148,758 bp · +
psbM · NC_056393.1 · 150,281–150,385 bp · +
trnC-GCA · NC_056393.1 · 151,680–151,750 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendranthus spicatus
ANNOTATED PLASTOME
NC_056393.1
152,151 bp · 129 genes
Gene function
RNA polymerase
Ribosomal protein
ATP synthase
Transfer RNA
Photosystem II
Other
NADH dehydrogenase
Ribosomal RNA
Photosystem I
Cytochrome
0 38038 76076 114113 152151 bp
Forward strand 5′ → 3′
rpoB rpoC1 rpoC2 rps2 atpI atpH atpF atpA trnR-UCU trnT-CGU rps16 matK psbA ycf2 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn5S trnR-ACG ycf1 trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rpl20 psbE psbF psbL psbJ atpB atpE trnM-CAU ndhC ndhK ndhJ trnF-GAA trnL-UAA rps4 trnS-GGA ycf3 psaA psaB rps14 trnG-GCC trnT-GGU psbM trnC-GCA
trnS-GCU psbI psbK trnQ-UUG trnK-UUU trnH-GUG rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf2 petD petB psbH psbT psbB rps12 rps18 rpl33 psaJ trnP-UGG trnW-CCA petG petL petA cemA ycf4 psaI accD rbcL trnT-UGU trnM-CAU psbZ trnS-UGA psbC psbD trnE-UUC trnY-GUA trnD-GUC petN
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
rpoB gene + 754 3966 3213 Locate
rpoC1 gene + 3993 6799 2807 Locate
rpoC2 gene + 6976 11133 4158 Locate
rps2 gene + 11342 12052 711 Locate
atpI gene + 12279 13022 744 Locate
atpH gene + 14056 14301 246 Locate
atpF gene + 14575 15815 1241 Locate
atpA gene + 15917 17440 1524 Locate
trnR-UCU gene + 17545 17616 72 Locate
trnT-CGU gene + 17807 18570 764 Locate
trnS-GCU gene − 19309 19396 88 Locate
psbI gene − 19550 19660 111 Locate
psbK gene − 20047 20232 186 Locate
trnQ-UUG gene − 20618 20689 72 Locate
rps16 gene + 21630 22763 1134 Locate
trnK-UUU gene − 23290 25868 2579 Locate
matK gene + 24029 25549 1521 Locate
psbA gene + 26097 27155 1059 Locate
trnH-GUG gene − 27455 27528 74 Locate
rpl2 gene − 27644 29122 1479 Locate
rpl23 gene − 29141 29422 282 Locate
trnI-CAU gene − 29588 29661 74 Locate
ycf2 gene + 29756 36583 6828 Locate
trnL-CAA gene − 37183 37263 81 Locate
ndhB gene − 37833 40040 2208 Locate
rps7 gene − 40296 40763 468 Locate
rps12 gene − 40817 40842 26 Locate
rps12 gene − 41379 41587 209 Locate
trnV-GAC gene + 43268 43339 72 Locate
rrn16S gene + 43560 45050 1491 Locate
trnI-GAU gene + 45348 46365 1018 Locate
trnA-UGC gene + 46430 47307 878 Locate
rrn23S gene + 47472 50282 2811 Locate
rrn4.5S gene − 50381 50645 265 Locate
rrn5S gene + 50739 50869 131 Locate
trnR-ACG gene + 51103 51176 74 Locate
trnN-GUU gene − 51750 51821 72 Locate
ycf1 gene + 52163 53293 1131 Locate
ndhF gene − 53187 55418 2232 Locate
trnL-UAG gene + 56828 56907 80 Locate
ccsA gene + 57024 57995 972 Locate
ndhD gene − 58208 59701 1494 Locate
psaC gene − 59828 60073 246 Locate
ndhE gene − 60328 60633 306 Locate
ndhG gene − 60842 61372 531 Locate
ndhI gene − 61735 62241 507 Locate
ndhA gene − 62322 64424 2103 Locate
ndhH gene − 64426 65607 1182 Locate
rps15 gene − 65722 65994 273 Locate
ycf1 gene − 66421 69831 3411 Locate
trnN-GUU gene + 72315 72386 72 Locate
trnR-ACG gene − 72960 73033 74 Locate
rrn5S gene − 73267 73397 131 Locate
rrn4.5S gene + 73491 73755 265 Locate
rrn23S gene − 73854 76664 2811 Locate
trnA-UGC gene − 76829 77706 878 Locate
trnI-GAU gene − 77771 78788 1018 Locate
rrn16S gene − 79086 80576 1491 Locate
trnV-GAC gene − 80797 80868 72 Locate
rps12 gene + 82528 82757 230 Locate
rps12 gene + 83294 83319 26 Locate
rps7 gene + 83373 83840 468 Locate
ndhB gene + 84096 86303 2208 Locate
trnL-CAA gene + 86873 86953 81 Locate
ycf2 gene − 87553 94380 6828 Locate
trnI-CAU gene + 94475 94548 74 Locate
rpl23 gene + 94714 94995 282 Locate
rpl2 gene + 95014 96492 1479 Locate
rps19 gene + 96560 96838 279 Locate
rpl22 gene + 96920 97393 474 Locate
rps3 gene + 97378 98034 657 Locate
rpl16 gene + 98184 99412 1229 Locate
rpl14 gene + 99545 99913 369 Locate
rps8 gene + 100085 100489 405 Locate
infA gene + 100616 100849 234 Locate
rpl36 gene + 100945 101058 114 Locate
rps11 gene + 101168 101584 417 Locate
rpoA gene + 101663 102670 1008 Locate
petD gene − 102847 103371 525 Locate
petB gene − 104219 105583 1365 Locate
psbH gene − 105726 105944 219 Locate
psbN gene + 106050 106181 132 Locate
psbT gene − 106247 106348 102 Locate
psbB gene − 106541 108067 1527 Locate
clpP gene + 108525 110456 1932 Locate
rps12 gene − 110585 110688 104 Locate
rpl20 gene + 111415 111801 387 Locate
rps18 gene − 112025 112333 309 Locate
rpl33 gene − 112497 112706 210 Locate
psaJ gene − 113146 113280 135 Locate
trnP-UGG gene − 113574 113647 74 Locate
trnW-CCA gene − 113816 113889 74 Locate
petG gene − 114002 114121 120 Locate
petL gene − 114220 114330 111 Locate
psbE gene + 115075 115326 252 Locate
psbF gene + 115317 115460 144 Locate
psbL gene + 115484 115600 117 Locate
psbJ gene + 115716 115868 153 Locate
petA gene − 116877 117839 963 Locate
cemA gene − 118054 118758 705 Locate
ycf4 gene − 119396 119950 555 Locate
psaI gene − 120394 120522 129 Locate
accD gene − 121233 122795 1563 Locate
rbcL gene − 123407 124861 1455 Locate
atpB gene + 125661 127151 1491 Locate
atpE gene + 127169 127549 381 Locate
trnM-CAU gene + 127800 127872 73 Locate
ndhC gene + 129547 129885 339 Locate
ndhK gene + 129945 130613 669 Locate
ndhJ gene + 130724 131200 477 Locate
trnF-GAA gene + 131915 131987 73 Locate
trnL-UAA gene + 132270 132826 557 Locate
trnT-UGU gene − 133515 133587 73 Locate
rps4 gene + 133953 134558 606 Locate
trnS-GGA gene + 134875 134961 87 Locate
ycf3 gene + 135802 137720 1919 Locate
psaA gene + 138502 140748 2247 Locate
psaB gene + 140774 142978 2205 Locate
rps14 gene + 143101 143403 303 Locate
trnM-CAU gene − 143572 143645 74 Locate
trnG-GCC gene + 143818 143888 71 Locate
psbZ gene − 144101 144289 189 Locate
trnS-UGA gene − 144655 144747 93 Locate
psbC gene − 144948 146369 1422 Locate
psbD gene − 146317 147378 1062 Locate
trnT-GGU gene + 148687 148758 72 Locate
trnE-UUC gene − 149360 149432 73 Locate
trnY-GUA gene − 149516 149599 84 Locate
trnD-GUC gene − 149717 149790 74 Locate
psbM gene + 150281 150385 105 Locate
petN gene − 151395 151484 90 Locate
trnC-GCA gene + 151680 151750 71 Locate
Status Available
Accession NC_056393.1
Length 152,151 bp
GC content 37.9%
Annotated genes 129
Gene sequence records 8
Rna Polymerase 4 Ribosomal Protein 27 Atp Synthase 6 Translation Rna 36 Photosystem Ii 15 Other 13 Nad Dehydrogenase 12 Ribosomal Rna 8 Photosystem I 5 Cytochrome 6
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources