Clerodendrum thomsoniae chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_064126.1 · 3–76 bp · −
psbA · NC_064126.1 · 440–1,498 bp · −
trnK-UUU · NC_064126.1 · 1,713–4,285 bp · −
matK · NC_064126.1 · 2,007–3,542 bp · −
rps16 · NC_064126.1 · 4,910–6,067 bp · −
trnQ-UUG · NC_064126.1 · 6,998–7,069 bp · −
trnS-GCU · NC_064126.1 · 8,251–8,338 bp · −
atpA · NC_064126.1 · 10,093–11,616 bp · −
atpF · NC_064126.1 · 11,704–12,945 bp · −
atpH · NC_064126.1 · 13,316–13,561 bp · −
atpI · NC_064126.1 · 14,577–15,320 bp · −
rps2 · NC_064126.1 · 15,499–16,209 bp · −
rpoC2 · NC_064126.1 · 16,398–20,576 bp · −
rpoC1 · NC_064126.1 · 20,731–23,546 bp · −
rpoB · NC_064126.1 · 23,573–26,785 bp · −
psbM · NC_064126.1 · 29,653–29,757 bp · −
trnD-GUC · NC_064126.1 · 30,260–30,333 bp · −
trnY-GUA · NC_064126.1 · 30,451–30,534 bp · −
trnE-UUC · NC_064126.1 · 30,594–30,666 bp · −
trnS-UGA · NC_064126.1 · 35,136–35,228 bp · −
trnM-CAU · NC_064126.1 · 36,184–36,257 bp · −
rps14 · NC_064126.1 · 36,402–36,704 bp · −
psaB · NC_064126.1 · 36,827–39,031 bp · −
psaA · NC_064126.1 · 39,057–41,309 bp · −
ycf3 · NC_064126.1 · 42,004–43,943 bp · −
rps4 · NC_064126.1 · 44,752–45,357 bp · −
trnT-UGU · NC_064126.1 · 45,729–45,801 bp · −
ndhJ · NC_064126.1 · 48,032–48,508 bp · −
ndhK · NC_064126.1 · 48,609–49,286 bp · −
ndhC · NC_064126.1 · 49,340–49,702 bp · −
trnV-UAC · NC_064126.1 · 50,621–51,283 bp · −
atpE · NC_064126.1 · 51,768–52,169 bp · −
atpB · NC_064126.1 · 52,166–53,662 bp · −
psbJ · NC_064126.1 · 63,163–63,285 bp · −
psbL · NC_064126.1 · 63,419–63,535 bp · −
psbF · NC_064126.1 · 63,559–63,678 bp · −
psbE · NC_064126.1 · 63,693–63,944 bp · −
trnW-CCA · NC_064126.1 · 65,368–65,441 bp · −
trnP-UGG · NC_064126.1 · 65,609–65,682 bp · −
rpl20 · NC_064126.1 · 67,490–67,876 bp · −
rps12 · NC_064126.1 · 68,692–68,805 bp · −
rps12 · NC_064126.1 · 96,592–96,834 bp · −
clpP · NC_064126.1 · 68,933–70,888 bp · −
psbN · NC_064126.1 · 73,165–73,296 bp · −
rpoA · NC_064126.1 · 76,692–77,705 bp · −
rps11 · NC_064126.1 · 77,782–78,198 bp · −
rpl36 · NC_064126.1 · 78,300–78,413 bp · −
infA · NC_064126.1 · 78,509–78,742 bp · −
rps8 · NC_064126.1 · 78,866–79,270 bp · −
rpl14 · NC_064126.1 · 79,446–79,814 bp · −
rpl16 · NC_064126.1 · 79,931–80,341 bp · −
rps3 · NC_064126.1 · 81,341–81,997 bp · −
rpl22 · NC_064126.1 · 81,982–82,449 bp · −
rpl2 · NC_064126.1 · 82,837–84,328 bp · −
rpl23 · NC_064126.1 · 84,347–84,628 bp · −
trnM-CAU · NC_064126.1 · 84,794–84,867 bp · −
trnL-CAA · NC_064126.1 · 92,402–92,482 bp · −
ndhB · NC_064126.1 · 93,032–95,243 bp · −
rps7 · NC_064126.1 · 95,517–95,984 bp · −
rrn4.5S · NC_064126.1 · 105,419–105,683 bp · −
trnN-GUU · NC_064126.1 · 106,781–106,852 bp · −
ccsA · NC_064126.1 · 121,013–121,978 bp · −
trnL-UAG · NC_064126.1 · 122,063–122,142 bp · −
trnR-ACG · NC_064126.1 · 127,579–127,652 bp · −
rrn5S · NC_064126.1 · 127,884–128,014 bp · −
rrn23S · NC_064126.1 · 128,377–131,285 bp · −
trnA-UGC · NC_064126.1 · 131,453–132,332 bp · −
trnI · NC_064126.1 · 132,397–133,416 bp · −
rrn16S · NC_064126.1 · 133,715–135,204 bp · −
trnV-GAC · NC_064126.1 · 135,432–135,503 bp · −
ycf15 · NC_064126.1 · 141,662–141,859 bp · −
ycf2 · NC_064126.1 · 142,001–148,840 bp · −
psbK · NC_064126.1 · 7,425–7,610 bp · +
psbI · NC_064126.1 · 8,016–8,126 bp · +
trnS-CGA · NC_064126.1 · 8,971–9,738 bp · +
trnR-UCU · NC_064126.1 · 9,917–9,988 bp · +
trnC-GCA · NC_064126.1 · 27,992–28,062 bp · +
petN · NC_064126.1 · 28,622–28,711 bp · +
trnT-GGU · NC_064126.1 · 31,215–31,286 bp · +
psbD · NC_064126.1 · 32,443–33,504 bp · +
psbC · NC_064126.1 · 33,452–34,873 bp · +
psbZ · NC_064126.1 · 35,533–35,721 bp · +
trnG-GCC · NC_064126.1 · 35,938–36,008 bp · +
trnS-GGA · NC_064126.1 · 44,365–44,451 bp · +
trnL-UAA · NC_064126.1 · 46,483–47,053 bp · +
trnF-GAA · NC_064126.1 · 47,343–47,415 bp · +
trnM-CAU · NC_064126.1 · 51,464–51,536 bp · +
rbcL · NC_064126.1 · 54,451–55,890 bp · +
accD · NC_064126.1 · 56,548–58,071 bp · +
psaI · NC_064126.1 · 58,686–58,796 bp · +
ycf4 · NC_064126.1 · 59,220–59,774 bp · +
cemA · NC_064126.1 · 60,407–61,096 bp · +
petA · NC_064126.1 · 61,305–62,267 bp · +
petL · NC_064126.1 · 64,858–64,953 bp · +
petG · NC_064126.1 · 65,132–65,245 bp · +
psaJ · NC_064126.1 · 65,968–66,102 bp · +
rpl33 · NC_064126.1 · 66,582–66,782 bp · +
rps18 · NC_064126.1 · 66,949–67,254 bp · +
rps12 · NC_064126.1 · 136,962–137,204 bp · +
psbB · NC_064126.1 · 71,293–72,819 bp · +
psbT · NC_064126.1 · 72,997–73,104 bp · +
psbH · NC_064126.1 · 73,402–73,623 bp · +
petB · NC_064126.1 · 73,745–75,108 bp · +
petD · NC_064126.1 · 75,978–76,502 bp · +
ycf2 · NC_064126.1 · 84,956–91,795 bp · +
ycf15 · NC_064126.1 · 91,937–92,134 bp · +
trnV-GAC · NC_064126.1 · 98,293–98,364 bp · +
rrn16S · NC_064126.1 · 98,592–100,081 bp · +
trnI · NC_064126.1 · 100,380–101,399 bp · +
trnA-UGC · NC_064126.1 · 101,464–102,343 bp · +
rrn23S · NC_064126.1 · 102,511–105,419 bp · +
rrn5S · NC_064126.1 · 105,782–105,912 bp · +
trnR-ACG · NC_064126.1 · 106,144–106,217 bp · +
ycf1 · NC_064126.1 · 107,194–112,770 bp · +
rps15 · NC_064126.1 · 113,137–113,409 bp · +
ndhH · NC_064126.1 · 113,506–114,687 bp · +
ndhA · NC_064126.1 · 114,689–116,697 bp · +
ndhI · NC_064126.1 · 116,788–117,294 bp · +
ndhG · NC_064126.1 · 117,636–118,166 bp · +
ndhE · NC_064126.1 · 118,377–118,682 bp · +
psaC · NC_064126.1 · 118,933–119,178 bp · +
ndhD · NC_064126.1 · 119,307–120,806 bp · +
ndhF · NC_064126.1 · 123,279–125,510 bp · +
trnN-GUU · NC_064126.1 · 126,944–127,015 bp · +
rrn4.5S · NC_064126.1 · 128,113–128,377 bp · +
rps7 · NC_064126.1 · 137,812–138,279 bp · +
ndhB · NC_064126.1 · 138,553–140,764 bp · +
trnL-CAA · NC_064126.1 · 141,314–141,394 bp · +
trnM-CAU · NC_064126.1 · 148,929–149,002 bp · +
rpl23 · NC_064126.1 · 149,168–149,449 bp · +
rpl2 · NC_064126.1 · 149,468–150,959 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum thomsoniae
ANNOTATED PLASTOME
NC_064126.1
151,053 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37763 75526 113290 151053 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG ycf1 rps15 ndhH ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ccsA trnL-UAG trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 440 1498 1059 Locate
trnK-UUU gene − 1713 4285 2573 Locate
matK gene − 2007 3542 1536 Locate
rps16 gene − 4910 6067 1158 Locate
trnQ-UUG gene − 6998 7069 72 Locate
psbK gene + 7425 7610 186 Locate
psbI gene + 8016 8126 111 Locate
trnS-GCU gene − 8251 8338 88 Locate
trnS-CGA gene + 8971 9738 768 Locate
trnR-UCU gene + 9917 9988 72 Locate
atpA gene − 10093 11616 1524 Locate
atpF gene − 11704 12945 1242 Locate
atpH gene − 13316 13561 246 Locate
atpI gene − 14577 15320 744 Locate
rps2 gene − 15499 16209 711 Locate
rpoC2 gene − 16398 20576 4179 Locate
rpoC1 gene − 20731 23546 2816 Locate
rpoB gene − 23573 26785 3213 Locate
trnC-GCA gene + 27992 28062 71 Locate
petN gene + 28622 28711 90 Locate
psbM gene − 29653 29757 105 Locate
trnD-GUC gene − 30260 30333 74 Locate
trnY-GUA gene − 30451 30534 84 Locate
trnE-UUC gene − 30594 30666 73 Locate
trnT-GGU gene + 31215 31286 72 Locate
psbD gene + 32443 33504 1062 Locate
psbC gene + 33452 34873 1422 Locate
trnS-UGA gene − 35136 35228 93 Locate
psbZ gene + 35533 35721 189 Locate
trnG-GCC gene + 35938 36008 71 Locate
trnM-CAU gene − 36184 36257 74 Locate
rps14 gene − 36402 36704 303 Locate
psaB gene − 36827 39031 2205 Locate
psaA gene − 39057 41309 2253 Locate
ycf3 gene − 42004 43943 1940 Locate
trnS-GGA gene + 44365 44451 87 Locate
rps4 gene − 44752 45357 606 Locate
trnT-UGU gene − 45729 45801 73 Locate
trnL-UAA gene + 46483 47053 571 Locate
trnF-GAA gene + 47343 47415 73 Locate
ndhJ gene − 48032 48508 477 Locate
ndhK gene − 48609 49286 678 Locate
ndhC gene − 49340 49702 363 Locate
trnV-UAC gene − 50621 51283 663 Locate
trnM-CAU gene + 51464 51536 73 Locate
atpE gene − 51768 52169 402 Locate
atpB gene − 52166 53662 1497 Locate
rbcL gene + 54451 55890 1440 Locate
accD gene + 56548 58071 1524 Locate
psaI gene + 58686 58796 111 Locate
ycf4 gene + 59220 59774 555 Locate
cemA gene + 60407 61096 690 Locate
petA gene + 61305 62267 963 Locate
psbJ gene − 63163 63285 123 Locate
psbL gene − 63419 63535 117 Locate
psbF gene − 63559 63678 120 Locate
psbE gene − 63693 63944 252 Locate
petL gene + 64858 64953 96 Locate
petG gene + 65132 65245 114 Locate
trnW-CCA gene − 65368 65441 74 Locate
trnP-UGG gene − 65609 65682 74 Locate
psaJ gene + 65968 66102 135 Locate
rpl33 gene + 66582 66782 201 Locate
rps18 gene + 66949 67254 306 Locate
rpl20 gene − 67490 67876 387 Locate
rps12 gene − 68692 68805 114 Locate
clpP gene − 68933 70888 1956 Locate
psbB gene + 71293 72819 1527 Locate
psbT gene + 72997 73104 108 Locate
psbN gene − 73165 73296 132 Locate
psbH gene + 73402 73623 222 Locate
petB gene + 73745 75108 1364 Locate
petD gene + 75978 76502 525 Locate
rpoA gene − 76692 77705 1014 Locate
rps11 gene − 77782 78198 417 Locate
rpl36 gene − 78300 78413 114 Locate
infA gene − 78509 78742 234 Locate
rps8 gene − 78866 79270 405 Locate
rpl14 gene − 79446 79814 369 Locate
rpl16 gene − 79931 80341 411 Locate
rps3 gene − 81341 81997 657 Locate
rpl22 gene − 81982 82449 468 Locate
rpl2 gene − 82837 84328 1492 Locate
rpl23 gene − 84347 84628 282 Locate
trnM-CAU gene − 84794 84867 74 Locate
ycf2 gene + 84956 91795 6840 Locate
ycf15 gene + 91937 92134 198 Locate
trnL-CAA gene − 92402 92482 81 Locate
ndhB gene − 93032 95243 2212 Locate
rps7 gene − 95517 95984 468 Locate
rps12 gene − 96592 96834 243 Locate
trnV-GAC gene + 98293 98364 72 Locate
rrn16S gene + 98592 100081 1490 Locate
trnI gene + 100380 101399 1020 Locate
trnA-UGC gene + 101464 102343 880 Locate
rrn23S gene + 102511 105419 2909 Locate
rrn4.5S gene − 105419 105683 265 Locate
rrn5S gene + 105782 105912 131 Locate
trnR-ACG gene + 106144 106217 74 Locate
trnN-GUU gene − 106781 106852 72 Locate
ycf1 gene + 107194 112770 5577 Locate
rps15 gene + 113137 113409 273 Locate
ndhH gene + 113506 114687 1182 Locate
ndhA gene + 114689 116697 2009 Locate
ndhI gene + 116788 117294 507 Locate
ndhG gene + 117636 118166 531 Locate
ndhE gene + 118377 118682 306 Locate
psaC gene + 118933 119178 246 Locate
ndhD gene + 119307 120806 1500 Locate
ccsA gene − 121013 121978 966 Locate
trnL-UAG gene − 122063 122142 80 Locate
ndhF gene + 123279 125510 2232 Locate
trnN-GUU gene + 126944 127015 72 Locate
trnR-ACG gene − 127579 127652 74 Locate
rrn5S gene − 127884 128014 131 Locate
rrn4.5S gene + 128113 128377 265 Locate
rrn23S gene − 128377 131285 2909 Locate
trnA-UGC gene − 131453 132332 880 Locate
trnI gene − 132397 133416 1020 Locate
rrn16S gene − 133715 135204 1490 Locate
trnV-GAC gene − 135432 135503 72 Locate
rps12 gene + 136962 137204 243 Locate
rps7 gene + 137812 138279 468 Locate
ndhB gene + 138553 140764 2212 Locate
trnL-CAA gene + 141314 141394 81 Locate
ycf15 gene − 141662 141859 198 Locate
ycf2 gene − 142001 148840 6840 Locate
trnM-CAU gene + 148929 149002 74 Locate
rpl23 gene + 149168 149449 282 Locate
rpl2 gene + 149468 150959 1492 Locate
Status Available
Accession NC_064126.1
Length 151,053 bp
GC content 38.2%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 24 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources