Holmskioldia sanguinea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · NC_047486.1 · 3–76 bp · −
psbA · NC_047486.1 · 471–1,529 bp · −
trnK-UUU · NC_047486.1 · 1,768–4,336 bp · −
matK · NC_047486.1 · 2,058–3,614 bp · −
rps16 · NC_047486.1 · 5,267–6,415 bp · −
trnQ-UUC · NC_047486.1 · 7,533–7,604 bp · −
trnS-GCU · NC_047486.1 · 8,733–8,820 bp · −
atpA · NC_047486.1 · 10,624–12,147 bp · −
atpF · NC_047486.1 · 12,213–13,469 bp · −
atpH · NC_047486.1 · 13,833–14,078 bp · −
atpI · NC_047486.1 · 15,089–15,832 bp · −
rps2 · NC_047486.1 · 16,049–16,759 bp · −
rpoC2 · NC_047486.1 · 16,979–21,184 bp · −
rpoC1 · NC_047486.1 · 21,338–24,190 bp · −
rpoB · NC_047486.1 · 24,217–27,429 bp · −
psbM · NC_047486.1 · 30,488–30,592 bp · −
trnD-GUC · NC_047486.1 · 31,128–31,201 bp · −
trnY-GUA · NC_047486.1 · 31,315–31,398 bp · −
trnE-UUC · NC_047486.1 · 31,458–31,530 bp · −
trnS-UCA · NC_047486.1 · 36,144–36,236 bp · −
trnfM-GAU · NC_047486.1 · 37,241–37,314 bp · −
rps14 · NC_047486.1 · 37,464–37,766 bp · −
psaB · NC_047486.1 · 37,894–40,098 bp · −
psaA · NC_047486.1 · 40,124–42,376 bp · −
ycf3 · NC_047486.1 · 43,099–45,018 bp · −
rps4 · NC_047486.1 · 46,289–46,894 bp · −
trnT-UGU · NC_047486.1 · 47,265–47,337 bp · −
ndhJ · NC_047486.1 · 49,667–50,143 bp · −
ndhK · NC_047486.1 · 50,244–50,921 bp · −
ndhC · NC_047486.1 · 50,974–51,336 bp · −
trnV-UAC · NC_047486.1 · 52,358–53,013 bp · −
atpE · NC_047486.1 · 53,483–53,884 bp · −
atpB · NC_047486.1 · 53,881–55,377 bp · −
pabJ · NC_047486.1 · 65,115–65,237 bp · −
psbL · NC_047486.1 · 65,371–65,487 bp · −
psbF · NC_047486.1 · 65,511–65,630 bp · −
psbE · NC_047486.1 · 65,645–65,896 bp · −
trnW-CCA · NC_047486.1 · 67,330–67,403 bp · −
trnP-UGG · NC_047486.1 · 67,563–67,636 bp · −
rpl20 · NC_047486.1 · 69,438–69,824 bp · −
rps12 · NC_047486.1 · 70,630–70,743 bp · −
rps12 · NC_047486.1 · 98,513–98,755 bp · −
clpP · NC_047486.1 · 70,877–72,829 bp · −
psbN · NC_047486.1 · 75,160–75,291 bp · −
rpoA · NC_047486.1 · 78,655–79,665 bp · −
rps11 · NC_047486.1 · 79,737–80,153 bp · −
rps36 · NC_047486.1 · 80,255–80,368 bp · −
infA · NC_047486.1 · 80,464–80,697 bp · −
rps8 · NC_047486.1 · 80,806–81,216 bp · −
rpl14 · NC_047486.1 · 81,396–81,764 bp · −
rpl16 · NC_047486.1 · 81,890–83,135 bp · −
rps3 · NC_047486.1 · 83,290–83,802 bp · −
rpl22 · NC_047486.1 · 83,937–84,401 bp · −
rps19 · NC_047486.1 · 84,456–84,605 bp · −
rpl2 · NC_047486.1 · 84,789–86,280 bp · −
rpl23 · NC_047486.1 · 86,299–86,580 bp · −
trnI-GAU · NC_047486.1 · 86,734–86,807 bp · −
trnL-CAA · NC_047486.1 · 94,332–94,412 bp · −
ndhB · NC_047486.1 · 94,955–97,166 bp · −
rps7 · NC_047486.1 · 97,441–97,908 bp · −
ndhF · NC_047486.1 · 110,280–112,544 bp · −
ndhD · NC_047486.1 · 115,069–116,598 bp · −
psaC · NC_047486.1 · 116,701–116,946 bp · −
ndhE · NC_047486.1 · 117,223–117,525 bp · −
ndhG · NC_047486.1 · 117,737–118,267 bp · −
ndhI · NC_047486.1 · 118,606–119,112 bp · −
ndhA · NC_047486.1 · 119,207–121,345 bp · −
ndhH · NC_047486.1 · 121,347–122,528 bp · −
rps15 · NC_047486.1 · 122,625–122,897 bp · −
ycf1 · NC_047486.1 · 123,161–128,725 bp · −
trnR-ACC · NC_047486.1 · 129,691–129,764 bp · −
rrn5 · NC_047486.1 · 129,999–130,119 bp · −
rrn4.5 · NC_047486.1 · 130,375–130,477 bp · −
rrn23 · NC_047486.1 · 130,576–133,387 bp · −
trnA-UGC · NC_047486.1 · 133,572–134,454 bp · −
trnI-GAU · NC_047486.1 · 134,520–135,538 bp · −
rrn16 · NC_047486.1 · 135,838–137,328 bp · −
trnV-GAC · NC_047486.1 · 137,555–137,626 bp · −
ycf15 · NC_047486.1 · 143,896–144,159 bp · −
ycf2 · NC_047486.1 · 144,235–151,071 bp · −
psbK · NC_047486.1 · 7,934–8,119 bp · +
psbI · NC_047486.1 · 8,500–8,610 bp · +
trnG-CGA · NC_047486.1 · 9,526–10,280 bp · +
trnR-UCU · NC_047486.1 · 10,455–10,526 bp · +
trnC-GCA · NC_047486.1 · 28,601–28,671 bp · +
petN · NC_047486.1 · 29,388–29,477 bp · +
trnT-GGU · NC_047486.1 · 32,099–32,169 bp · +
psbD · NC_047486.1 · 33,470–34,531 bp · +
psbC · NC_047486.1 · 34,479–35,900 bp · +
psbZ · NC_047486.1 · 36,560–36,748 bp · +
trnG-GCC · NC_047486.1 · 37,022–37,092 bp · +
trnS-GGA · NC_047486.1 · 45,918–46,004 bp · +
trnL-UAA · NC_047486.1 · 48,054–48,622 bp · +
trnF-GAA · NC_047486.1 · 48,927–48,999 bp · +
trnM-CAU · NC_047486.1 · 53,194–53,266 bp · +
rbcL · NC_047486.1 · 56,131–57,570 bp · +
accD · NC_047486.1 · 58,287–59,774 bp · +
psaI · NC_047486.1 · 60,468–60,578 bp · +
ycf4 · NC_047486.1 · 61,013–61,567 bp · +
cemA · NC_047486.1 · 62,225–62,914 bp · +
petA · NC_047486.1 · 63,134–64,096 bp · +
petL · NC_047486.1 · 66,825–66,920 bp · +
petG · NC_047486.1 · 67,095–67,208 bp · +
psaJ · NC_047486.1 · 67,909–68,043 bp · +
rpl33 · NC_047486.1 · 68,523–68,723 bp · +
rps18 · NC_047486.1 · 68,898–69,203 bp · +
rps12 · NC_047486.1 · 139,212–139,454 bp · +
psbB · NC_047486.1 · 73,277–74,803 bp · +
psbT · NC_047486.1 · 74,992–75,099 bp · +
psbH · NC_047486.1 · 75,395–75,616 bp · +
petB · NC_047486.1 · 75,741–77,111 bp · +
petD · NC_047486.1 · 77,300–78,492 bp · +
ycf2 · NC_047486.1 · 86,896–93,732 bp · +
ycf15 · NC_047486.1 · 93,808–94,071 bp · +
trnV-GAC · NC_047486.1 · 100,341–100,412 bp · +
rrn16 · NC_047486.1 · 100,639–102,129 bp · +
trnI-GAU · NC_047486.1 · 102,429–103,447 bp · +
trnA-UGC · NC_047486.1 · 103,513–104,395 bp · +
rrn23 · NC_047486.1 · 104,580–107,391 bp · +
rrn4.5 · NC_047486.1 · 107,490–107,592 bp · +
rrn5 · NC_047486.1 · 107,848–107,968 bp · +
trnR-ACG · NC_047486.1 · 108,203–108,276 bp · +
trnN-GUU · NC_047486.1 · 108,841–108,912 bp · +
ycf1 · NC_047486.1 · 109,242–110,339 bp · +
rpl32 · NC_047486.1 · 113,062–113,238 bp · +
trnL-UAG · NC_047486.1 · 113,682–113,761 bp · +
ccsA · NC_047486.1 · 113,858–114,832 bp · +
trnN-GUU · NC_047486.1 · 129,055–129,126 bp · +
rps7 · NC_047486.1 · 140,059–140,526 bp · +
ndhB · NC_047486.1 · 140,801–143,012 bp · +
trnL-CAA · NC_047486.1 · 143,555–143,635 bp · +
trnI-CAU · NC_047486.1 · 151,160–151,233 bp · +
rpl23 · NC_047486.1 · 151,387–151,668 bp · +
rpl2 · NC_047486.1 · 151,687–153,178 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Holmskioldia sanguinea
ANNOTATED PLASTOME
NC_047486.1
153,273 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38318 76636 114955 153273 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 471 1529 1059 Locate
trnK-UUU gene − 1768 4336 2569 Locate
matK gene − 2058 3614 1557 Locate
rps16 gene − 5267 6415 1149 Locate
trnQ-UUC gene − 7533 7604 72 Locate
psbK gene + 7934 8119 186 Locate
psbI gene + 8500 8610 111 Locate
trnS-GCU gene − 8733 8820 88 Locate
trnG-CGA gene + 9526 10280 755 Locate
trnR-UCU gene + 10455 10526 72 Locate
atpA gene − 10624 12147 1524 Locate
atpF gene − 12213 13469 1257 Locate
atpH gene − 13833 14078 246 Locate
atpI gene − 15089 15832 744 Locate
rps2 gene − 16049 16759 711 Locate
rpoC2 gene − 16979 21184 4206 Locate
rpoC1 gene − 21338 24190 2853 Locate
rpoB gene − 24217 27429 3213 Locate
trnC-GCA gene + 28601 28671 71 Locate
petN gene + 29388 29477 90 Locate
psbM gene − 30488 30592 105 Locate
trnD-GUC gene − 31128 31201 74 Locate
trnY-GUA gene − 31315 31398 84 Locate
trnE-UUC gene − 31458 31530 73 Locate
trnT-GGU gene + 32099 32169 71 Locate
psbD gene + 33470 34531 1062 Locate
psbC gene + 34479 35900 1422 Locate
trnS-UCA gene − 36144 36236 93 Locate
psbZ gene + 36560 36748 189 Locate
trnG-GCC gene + 37022 37092 71 Locate
trnfM-GAU gene − 37241 37314 74 Locate
rps14 gene − 37464 37766 303 Locate
psaB gene − 37894 40098 2205 Locate
psaA gene − 40124 42376 2253 Locate
ycf3 gene − 43099 45018 1920 Locate
trnS-GGA gene + 45918 46004 87 Locate
rps4 gene − 46289 46894 606 Locate
trnT-UGU gene − 47265 47337 73 Locate
trnL-UAA gene + 48054 48622 569 Locate
trnF-GAA gene + 48927 48999 73 Locate
ndhJ gene − 49667 50143 477 Locate
ndhK gene − 50244 50921 678 Locate
ndhC gene − 50974 51336 363 Locate
trnV-UAC gene − 52358 53013 656 Locate
trnM-CAU gene + 53194 53266 73 Locate
atpE gene − 53483 53884 402 Locate
atpB gene − 53881 55377 1497 Locate
rbcL gene + 56131 57570 1440 Locate
accD gene + 58287 59774 1488 Locate
psaI gene + 60468 60578 111 Locate
ycf4 gene + 61013 61567 555 Locate
cemA gene + 62225 62914 690 Locate
petA gene + 63134 64096 963 Locate
pabJ gene − 65115 65237 123 Locate
psbL gene − 65371 65487 117 Locate
psbF gene − 65511 65630 120 Locate
psbE gene − 65645 65896 252 Locate
petL gene + 66825 66920 96 Locate
petG gene + 67095 67208 114 Locate
trnW-CCA gene − 67330 67403 74 Locate
trnP-UGG gene − 67563 67636 74 Locate
psaJ gene + 67909 68043 135 Locate
rpl33 gene + 68523 68723 201 Locate
rps18 gene + 68898 69203 306 Locate
rpl20 gene − 69438 69824 387 Locate
rps12 gene − 70630 70743 114 Locate
clpP gene − 70877 72829 1953 Locate
psbB gene + 73277 74803 1527 Locate
psbT gene + 74992 75099 108 Locate
psbN gene − 75160 75291 132 Locate
psbH gene + 75395 75616 222 Locate
petB gene + 75741 77111 1371 Locate
petD gene + 77300 78492 1193 Locate
rpoA gene − 78655 79665 1011 Locate
rps11 gene − 79737 80153 417 Locate
rps36 gene − 80255 80368 114 Locate
infA gene − 80464 80697 234 Locate
rps8 gene − 80806 81216 411 Locate
rpl14 gene − 81396 81764 369 Locate
rpl16 gene − 81890 83135 1246 Locate
rps3 gene − 83290 83802 513 Locate
rpl22 gene − 83937 84401 465 Locate
rps19 gene − 84456 84605 150 Locate
rpl2 gene − 84789 86280 1492 Locate
rpl23 gene − 86299 86580 282 Locate
trnI-GAU gene − 86734 86807 74 Locate
ycf2 gene + 86896 93732 6837 Locate
ycf15 gene + 93808 94071 264 Locate
trnL-CAA gene − 94332 94412 81 Locate
ndhB gene − 94955 97166 2212 Locate
rps7 gene − 97441 97908 468 Locate
rps12 gene − 98513 98755 243 Locate
trnV-GAC gene + 100341 100412 72 Locate
rrn16 gene + 100639 102129 1491 Locate
trnI-GAU gene + 102429 103447 1019 Locate
trnA-UGC gene + 103513 104395 883 Locate
rrn23 gene + 104580 107391 2812 Locate
rrn4.5 gene + 107490 107592 103 Locate
rrn5 gene + 107848 107968 121 Locate
trnR-ACG gene + 108203 108276 74 Locate
trnN-GUU gene + 108841 108912 72 Locate
ycf1 gene + 109242 110339 1098 Locate
ndhF gene − 110280 112544 2265 Locate
rpl32 gene + 113062 113238 177 Locate
trnL-UAG gene + 113682 113761 80 Locate
ccsA gene + 113858 114832 975 Locate
ndhD gene − 115069 116598 1530 Locate
psaC gene − 116701 116946 246 Locate
ndhE gene − 117223 117525 303 Locate
ndhG gene − 117737 118267 531 Locate
ndhI gene − 118606 119112 507 Locate
ndhA gene − 119207 121345 2139 Locate
ndhH gene − 121347 122528 1182 Locate
rps15 gene − 122625 122897 273 Locate
ycf1 gene − 123161 128725 5565 Locate
trnN-GUU gene + 129055 129126 72 Locate
trnR-ACC gene − 129691 129764 74 Locate
rrn5 gene − 129999 130119 121 Locate
rrn4.5 gene − 130375 130477 103 Locate
rrn23 gene − 130576 133387 2812 Locate
trnA-UGC gene − 133572 134454 883 Locate
trnI-GAU gene − 134520 135538 1019 Locate
rrn16 gene − 135838 137328 1491 Locate
trnV-GAC gene − 137555 137626 72 Locate
rps12 gene + 139212 139454 243 Locate
rps7 gene + 140059 140526 468 Locate
ndhB gene + 140801 143012 2212 Locate
trnL-CAA gene + 143555 143635 81 Locate
ycf15 gene − 143896 144159 264 Locate
ycf2 gene − 144235 151071 6837 Locate
trnI-CAU gene + 151160 151233 74 Locate
rpl23 gene + 151387 151668 282 Locate
rpl2 gene + 151687 153178 1492 Locate
Status Available
Accession NC_047486.1
Length 153,273 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources