Coordinate-aware organelle record

Holmskioldia sanguinea chloroplast genome

Available NC_047486.1 153,273 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	470	1529	1059
trnK-UUU	gene	translation-rna	−	1767	4336	2569
matK	gene	other	−	2057	3614	1557
rps16	gene	ribosomal-protein	−	5266	6415	1149
trnQ-UUC	gene	translation-rna	−	7532	7604	72
psbK	gene	photosystem-ii	+	7933	8119	186
psbI	gene	photosystem-ii	+	8499	8610	111
trnS-GCU	gene	translation-rna	−	8732	8820	88
trnG-CGA	gene	translation-rna	+	9525	10280	755
trnR-UCU	gene	translation-rna	+	10454	10526	72
atpA	gene	atp-synthase	−	10623	12147	1524
atpF	gene	atp-synthase	−	12212	13469	1257
atpH	gene	atp-synthase	−	13832	14078	246
atpI	gene	atp-synthase	−	15088	15832	744
rps2	gene	ribosomal-protein	−	16048	16759	711
rpoC2	gene	rna-polymerase	−	16978	21184	4206
rpoC1	gene	rna-polymerase	−	21337	24190	2853
rpoB	gene	rna-polymerase	−	24216	27429	3213
trnC-GCA	gene	translation-rna	+	28600	28671	71
petN	gene	cytochrome	+	29387	29477	90
psbM	gene	photosystem-ii	−	30487	30592	105
trnD-GUC	gene	translation-rna	−	31127	31201	74
trnY-GUA	gene	translation-rna	−	31314	31398	84
trnE-UUC	gene	translation-rna	−	31457	31530	73
trnT-GGU	gene	translation-rna	+	32098	32169	71
psbD	gene	photosystem-ii	+	33469	34531	1062
psbC	gene	photosystem-ii	+	34478	35900	1422
trnS-UCA	gene	translation-rna	−	36143	36236	93
psbZ	gene	photosystem-ii	+	36559	36748	189
trnG-GCC	gene	translation-rna	+	37021	37092	71
trnfM-GAU	gene	translation-rna	−	37240	37314	74
rps14	gene	ribosomal-protein	−	37463	37766	303
psaB	gene	photosystem-i	−	37893	40098	2205
psaA	gene	photosystem-i	−	40123	42376	2253
ycf3	gene	other	−	43098	45018	1920
trnS-GGA	gene	translation-rna	+	45917	46004	87
rps4	gene	ribosomal-protein	−	46288	46894	606
trnT-UGU	gene	translation-rna	−	47264	47337	73
trnL-UAA	gene	translation-rna	+	48053	48622	569
trnF-GAA	gene	translation-rna	+	48926	48999	73
ndhJ	gene	nad-dehydrogenase	−	49666	50143	477
ndhK	gene	nad-dehydrogenase	−	50243	50921	678
ndhC	gene	nad-dehydrogenase	−	50973	51336	363
trnV-UAC	gene	translation-rna	−	52357	53013	656
trnM-CAU	gene	translation-rna	+	53193	53266	73
atpE	gene	atp-synthase	−	53482	53884	402
atpB	gene	atp-synthase	−	53880	55377	1497
rbcL	gene	other	+	56130	57570	1440
accD	gene	other	+	58286	59774	1488
psaI	gene	photosystem-i	+	60467	60578	111
ycf4	gene	other	+	61012	61567	555
cemA	gene	other	+	62224	62914	690
petA	gene	cytochrome	+	63133	64096	963
pabJ	gene	other	−	65114	65237	123
psbL	gene	photosystem-ii	−	65370	65487	117
psbF	gene	photosystem-ii	−	65510	65630	120
psbE	gene	photosystem-ii	−	65644	65896	252
petL	gene	cytochrome	+	66824	66920	96
petG	gene	cytochrome	+	67094	67208	114
trnW-CCA	gene	translation-rna	−	67329	67403	74
trnP-UGG	gene	translation-rna	−	67562	67636	74
psaJ	gene	photosystem-i	+	67908	68043	135
rpl33	gene	ribosomal-protein	+	68522	68723	201
rps18	gene	ribosomal-protein	+	68897	69203	306
rpl20	gene	ribosomal-protein	−	69437	69824	387
rps12	gene	ribosomal-protein	−	70629	98755	28126
rps12	gene	ribosomal-protein	+	70629	139454	68825
clpP	gene	other	−	70876	72829	1953
psbB	gene	photosystem-ii	+	73276	74803	1527
psbT	gene	photosystem-ii	+	74991	75099	108
psbN	gene	photosystem-ii	−	75159	75291	132
psbH	gene	photosystem-ii	+	75394	75616	222
petB	gene	cytochrome	+	75740	77111	1371
petD	gene	cytochrome	+	77299	78492	1193
rpoA	gene	rna-polymerase	−	78654	79665	1011
rps11	gene	ribosomal-protein	−	79736	80153	417
rps36	gene	ribosomal-protein	−	80254	80368	114
infA	gene	other	−	80463	80697	234
rps8	gene	ribosomal-protein	−	80805	81216	411
rpl14	gene	ribosomal-protein	−	81395	81764	369
rpl16	gene	ribosomal-protein	−	81889	83135	1246
rps3	gene	ribosomal-protein	−	83289	83802	513
rpl22	gene	ribosomal-protein	−	83936	84401	465
rps19	gene	ribosomal-protein	−	84455	84605	150
rpl2	gene	ribosomal-protein	−	84788	86280	1492
rpl23	gene	ribosomal-protein	−	86298	86580	282
trnI-GAU	gene	translation-rna	−	86733	86807	74
ycf2	gene	other	+	86895	93732	6837
ycf15	gene	other	+	93807	94071	264
trnL-CAA	gene	translation-rna	−	94331	94412	81
ndhB	gene	nad-dehydrogenase	−	94954	97166	2212
rps7	gene	ribosomal-protein	−	97440	97908	468
trnV-GAC	gene	translation-rna	+	100340	100412	72
rrn16	gene	ribosomal-rna	+	100638	102129	1491
trnI-GAU	gene	translation-rna	+	102428	103447	1019
trnA-UGC	gene	translation-rna	+	103512	104395	883
rrn23	gene	ribosomal-rna	+	104579	107391	2812
rrn4.5	gene	ribosomal-rna	+	107489	107592	103
rrn5	gene	ribosomal-rna	+	107847	107968	121
trnR-ACG	gene	translation-rna	+	108202	108276	74
trnN-GUU	gene	translation-rna	+	108840	108912	72
ycf1	gene	other	+	109241	110339	1098
ndhF	gene	nad-dehydrogenase	−	110279	112544	2265
rpl32	gene	ribosomal-protein	+	113061	113238	177
trnL-UAG	gene	translation-rna	+	113681	113761	80
ccsA	gene	other	+	113857	114832	975
ndhD	gene	nad-dehydrogenase	−	115068	116598	1530
psaC	gene	photosystem-i	−	116700	116946	246
ndhE	gene	nad-dehydrogenase	−	117222	117525	303
ndhG	gene	nad-dehydrogenase	−	117736	118267	531
ndhI	gene	nad-dehydrogenase	−	118605	119112	507
ndhA	gene	nad-dehydrogenase	−	119206	121345	2139
ndhH	gene	nad-dehydrogenase	−	121346	122528	1182
rps15	gene	ribosomal-protein	−	122624	122897	273
ycf1	gene	other	−	123160	128725	5565
trnN-GUU	gene	translation-rna	+	129054	129126	72
trnR-ACC	gene	translation-rna	−	129690	129764	74
rrn5	gene	ribosomal-rna	−	129998	130119	121
rrn4.5	gene	ribosomal-rna	−	130374	130477	103
rrn23	gene	ribosomal-rna	−	130575	133387	2812
trnA-UGC	gene	translation-rna	−	133571	134454	883
trnI-GAU	gene	translation-rna	−	134519	135538	1019
rrn16	gene	ribosomal-rna	−	135837	137328	1491
trnV-GAC	gene	translation-rna	−	137554	137626	72
rps7	gene	ribosomal-protein	+	140058	140526	468
ndhB	gene	nad-dehydrogenase	+	140800	143012	2212
trnL-CAA	gene	translation-rna	+	143554	143635	81
ycf15	gene	other	−	143895	144159	264
ycf2	gene	other	−	144234	151071	6837
trnI-CAU	gene	translation-rna	+	151159	151233	74
rpl23	gene	ribosomal-protein	+	151386	151668	282
rpl2	gene	ribosomal-protein	+	151686	153178	1492

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_047486.1DNA · accDNC_047486DNA · atpBNC_047486DNA · matKNC_047486DNA · ndhFNC_047486DNA · psbANC_047486DNA · rbcLNC_047486DNA · rps12NC_047486DNA · ycf1NC_047486