Isodon rubescens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_053708.1 · 11–84 bp · −
psbA · NC_053708.1 · 393–1,451 bp · −
trnK-UUU · NC_053708.1 · 1,682–4,263 bp · −
matK · NC_053708.1 · 2,003–3,523 bp · −
rps16 · NC_053708.1 · 4,788–5,933 bp · −
trnQ-UUG · NC_053708.1 · 6,878–6,949 bp · −
trnS-GCU · NC_053708.1 · 8,183–8,270 bp · −
atpA · NC_053708.1 · 10,157–11,680 bp · −
atpF · NC_053708.1 · 11,785–13,030 bp · −
atpH · NC_053708.1 · 13,322–13,567 bp · −
atpI · NC_053708.1 · 14,569–15,312 bp · −
rps2 · NC_053708.1 · 15,538–16,248 bp · −
rpoC2 · NC_053708.1 · 16,465–20,634 bp · −
rpoC1 · NC_053708.1 · 20,811–23,644 bp · −
rpoB · NC_053708.1 · 23,671–26,883 bp · −
psbM · NC_053708.1 · 29,388–29,492 bp · −
trnD-GUC · NC_053708.1 · 30,011–30,084 bp · −
trnY-GUA · NC_053708.1 · 30,195–30,278 bp · −
trnE-UUC · NC_053708.1 · 30,356–30,428 bp · −
trnS-UGA · NC_053708.1 · 35,101–35,193 bp · −
trnM-CAU · NC_053708.1 · 36,228–36,301 bp · −
rps14 · NC_053708.1 · 36,447–36,749 bp · −
psaB · NC_053708.1 · 36,872–39,076 bp · −
psaA · NC_053708.1 · 39,102–41,354 bp · −
ycf3 · NC_053708.1 · 42,129–44,076 bp · −
rps4 · NC_053708.1 · 45,323–45,928 bp · −
trnT-UGU · NC_053708.1 · 46,342–46,414 bp · −
ndhJ · NC_053708.1 · 48,699–49,175 bp · −
ndhK · NC_053708.1 · 49,286–49,963 bp · −
ndhC · NC_053708.1 · 50,015–50,377 bp · −
atpE · NC_053708.1 · 52,450–52,851 bp · −
atpB · NC_053708.1 · 52,848–54,344 bp · −
psbJ · NC_053708.1 · 64,066–64,188 bp · −
psbL · NC_053708.1 · 64,323–64,439 bp · −
psbF · NC_053708.1 · 64,463–64,582 bp · −
psbE · NC_053708.1 · 64,597–64,848 bp · −
trnW-CCA · NC_053708.1 · 66,247–66,320 bp · −
trnP-UGG · NC_053708.1 · 66,489–66,562 bp · −
rpl20 · NC_053708.1 · 68,347–68,733 bp · −
rps12 · NC_053708.1 · 69,465–69,578 bp · −
rps12 · NC_053708.1 · 96,960–97,731 bp · −
clpP · NC_053708.1 · 69,697–71,611 bp · −
psbN · NC_053708.1 · 74,051–74,182 bp · −
rpoA · NC_053708.1 · 77,556–78,563 bp · −
rps11 · NC_053708.1 · 78,635–79,051 bp · −
rpl36 · NC_053708.1 · 79,167–79,280 bp · −
infA · NC_053708.1 · 79,376–79,609 bp · −
rps8 · NC_053708.1 · 79,736–80,140 bp · −
rpl14 · NC_053708.1 · 80,323–80,691 bp · −
rpl16 · NC_053708.1 · 80,825–82,092 bp · −
rps3 · NC_053708.1 · 82,236–82,898 bp · −
rpl22 · NC_053708.1 · 82,883–83,356 bp · −
rps19 · NC_053708.1 · 83,421–83,699 bp · −
rpl2 · NC_053708.1 · 83,767–85,245 bp · −
rpl23 · NC_053708.1 · 85,264–85,545 bp · −
trnI-CAU · NC_053708.1 · 85,711–85,784 bp · −
trnL-CAA · NC_053708.1 · 93,309–93,389 bp · −
ndhB · NC_053708.1 · 93,961–96,168 bp · −
rps7 · NC_053708.1 · 96,439–96,906 bp · −
rrn4.5S · NC_053708.1 · 106,542–106,806 bp · −
trnN-GUU · NC_053708.1 · 107,900–107,971 bp · −
ndhF · NC_053708.1 · 109,337–111,568 bp · −
ndhD · NC_053708.1 · 114,344–115,843 bp · −
psaC · NC_053708.1 · 115,964–116,209 bp · −
ndhE · NC_053708.1 · 116,465–116,770 bp · −
ndhG · NC_053708.1 · 116,985–117,515 bp · −
ndhI · NC_053708.1 · 117,874–118,380 bp · −
ndhA · NC_053708.1 · 118,461–120,583 bp · −
ndhH · NC_053708.1 · 120,585–121,766 bp · −
rps15 · NC_053708.1 · 121,881–122,153 bp · −
ycf1 · NC_053708.1 · 122,583–125,969 bp · −
trnR-ACG · NC_053708.1 · 129,081–129,154 bp · −
rrn5S · NC_053708.1 · 129,388–129,518 bp · −
rrn23S · NC_053708.1 · 129,975–132,785 bp · −
trnA-UGC · NC_053708.1 · 132,957–133,835 bp · −
trnI-GAU · NC_053708.1 · 133,900–134,918 bp · −
rrn16S · NC_053708.1 · 135,216–136,706 bp · −
trnV-GAC · NC_053708.1 · 136,933–137,004 bp · −
ycf2 · NC_053708.1 · 143,709–150,539 bp · −
psbK · NC_053708.1 · 7,343–7,528 bp · +
psbI · NC_053708.1 · 7,917–8,027 bp · +
trnT-CGU · NC_053708.1 · 9,031–9,791 bp · +
trnR-UCU · NC_053708.1 · 9,982–10,053 bp · +
trnC-GCA · NC_053708.1 · 28,073–28,143 bp · +
petN · NC_053708.1 · 28,306–28,395 bp · +
trnT-GGU · NC_053708.1 · 31,038–31,109 bp · +
psbD · NC_053708.1 · 32,427–33,488 bp · +
psbC · NC_053708.1 · 33,436–34,857 bp · +
psbZ · NC_053708.1 · 35,534–35,722 bp · +
trnG-GCC · NC_053708.1 · 35,967–36,037 bp · +
trnS-GGA · NC_053708.1 · 44,940–45,026 bp · +
trnL-UAA · NC_053708.1 · 47,101–47,665 bp · +
trnF-GAA · NC_053708.1 · 47,959–48,031 bp · +
trnM-CAU · NC_053708.1 · 52,177–52,249 bp · +
rbcL · NC_053708.1 · 55,114–56,568 bp · +
accD · NC_053708.1 · 57,210–58,760 bp · +
psaI · NC_053708.1 · 59,460–59,570 bp · +
ycf4 · NC_053708.1 · 60,018–60,572 bp · +
cemA · NC_053708.1 · 61,163–61,852 bp · +
petA · NC_053708.1 · 62,067–63,029 bp · +
petL · NC_053708.1 · 65,741–65,836 bp · +
petG · NC_053708.1 · 66,011–66,124 bp · +
psaJ · NC_053708.1 · 66,844–66,978 bp · +
rpl33 · NC_053708.1 · 67,440–67,640 bp · +
rps18 · NC_053708.1 · 67,807–68,112 bp · +
rps12 · NC_053708.1 · 138,666–139,458 bp · +
psbB · NC_053708.1 · 72,084–73,610 bp · +
psbT · NC_053708.1 · 73,794–73,895 bp · +
psbH · NC_053708.1 · 74,288–74,506 bp · +
petB · NC_053708.1 · 74,632–75,998 bp · +
petD · NC_053708.1 · 76,855–77,379 bp · +
ycf2 · NC_053708.1 · 85,879–92,709 bp · +
trnV-GAC · NC_053708.1 · 99,414–99,485 bp · +
rrn16S · NC_053708.1 · 99,712–101,202 bp · +
trnI-GAU · NC_053708.1 · 101,500–102,518 bp · +
trnA-UGC · NC_053708.1 · 102,583–103,461 bp · +
rrn23S · NC_053708.1 · 103,633–106,443 bp · +
rrn5S · NC_053708.1 · 106,900–107,030 bp · +
trnR-ACG · NC_053708.1 · 107,264–107,337 bp · +
ycf1 · NC_053708.1 · 108,313–109,443 bp · +
trnL-UAG · NC_053708.1 · 112,972–113,051 bp · +
ccsA · NC_053708.1 · 113,140–114,111 bp · +
trnN-GUU · NC_053708.1 · 128,447–128,518 bp · +
rrn4.5S · NC_053708.1 · 129,612–129,876 bp · +
rps7 · NC_053708.1 · 139,512–139,979 bp · +
ndhB · NC_053708.1 · 140,250–142,457 bp · +
trnL-CAA · NC_053708.1 · 143,029–143,109 bp · +
trnI-CAU · NC_053708.1 · 150,634–150,707 bp · +
rpl23 · NC_053708.1 · 150,873–151,154 bp · +
rpl2 · NC_053708.1 · 151,173–152,651 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon rubescens
ANNOTATED PLASTOME
NC_053708.1
152,761 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38190 76380 114571 152761 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn5S trnR-ACG ycf1 trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1682 4263 2582 Locate
matK gene − 2003 3523 1521 Locate
rps16 gene − 4788 5933 1146 Locate
trnQ-UUG gene − 6878 6949 72 Locate
psbK gene + 7343 7528 186 Locate
psbI gene + 7917 8027 111 Locate
trnS-GCU gene − 8183 8270 88 Locate
trnT-CGU gene + 9031 9791 761 Locate
trnR-UCU gene + 9982 10053 72 Locate
atpA gene − 10157 11680 1524 Locate
atpF gene − 11785 13030 1246 Locate
atpH gene − 13322 13567 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15538 16248 711 Locate
rpoC2 gene − 16465 20634 4170 Locate
rpoC1 gene − 20811 23644 2834 Locate
rpoB gene − 23671 26883 3213 Locate
trnC-GCA gene + 28073 28143 71 Locate
petN gene + 28306 28395 90 Locate
psbM gene − 29388 29492 105 Locate
trnD-GUC gene − 30011 30084 74 Locate
trnY-GUA gene − 30195 30278 84 Locate
trnE-UUC gene − 30356 30428 73 Locate
trnT-GGU gene + 31038 31109 72 Locate
psbD gene + 32427 33488 1062 Locate
psbC gene + 33436 34857 1422 Locate
trnS-UGA gene − 35101 35193 93 Locate
psbZ gene + 35534 35722 189 Locate
trnG-GCC gene + 35967 36037 71 Locate
trnM-CAU gene − 36228 36301 74 Locate
rps14 gene − 36447 36749 303 Locate
psaB gene − 36872 39076 2205 Locate
psaA gene − 39102 41354 2253 Locate
ycf3 gene − 42129 44076 1948 Locate
trnS-GGA gene + 44940 45026 87 Locate
rps4 gene − 45323 45928 606 Locate
trnT-UGU gene − 46342 46414 73 Locate
trnL-UAA gene + 47101 47665 565 Locate
trnF-GAA gene + 47959 48031 73 Locate
ndhJ gene − 48699 49175 477 Locate
ndhK gene − 49286 49963 678 Locate
ndhC gene − 50015 50377 363 Locate
trnM-CAU gene + 52177 52249 73 Locate
atpE gene − 52450 52851 402 Locate
atpB gene − 52848 54344 1497 Locate
rbcL gene + 55114 56568 1455 Locate
accD gene + 57210 58760 1551 Locate
psaI gene + 59460 59570 111 Locate
ycf4 gene + 60018 60572 555 Locate
cemA gene + 61163 61852 690 Locate
petA gene + 62067 63029 963 Locate
psbJ gene − 64066 64188 123 Locate
psbL gene − 64323 64439 117 Locate
psbF gene − 64463 64582 120 Locate
psbE gene − 64597 64848 252 Locate
petL gene + 65741 65836 96 Locate
petG gene + 66011 66124 114 Locate
trnW-CCA gene − 66247 66320 74 Locate
trnP-UGG gene − 66489 66562 74 Locate
psaJ gene + 66844 66978 135 Locate
rpl33 gene + 67440 67640 201 Locate
rps18 gene + 67807 68112 306 Locate
rpl20 gene − 68347 68733 387 Locate
rps12 gene − 69465 69578 114 Locate
clpP gene − 69697 71611 1915 Locate
psbB gene + 72084 73610 1527 Locate
psbT gene + 73794 73895 102 Locate
psbN gene − 74051 74182 132 Locate
psbH gene + 74288 74506 219 Locate
petB gene + 74632 75998 1367 Locate
petD gene + 76855 77379 525 Locate
rpoA gene − 77556 78563 1008 Locate
rps11 gene − 78635 79051 417 Locate
rpl36 gene − 79167 79280 114 Locate
infA gene − 79376 79609 234 Locate
rps8 gene − 79736 80140 405 Locate
rpl14 gene − 80323 80691 369 Locate
rpl16 gene − 80825 82092 1268 Locate
rps3 gene − 82236 82898 663 Locate
rpl22 gene − 82883 83356 474 Locate
rps19 gene − 83421 83699 279 Locate
rpl2 gene − 83767 85245 1479 Locate
rpl23 gene − 85264 85545 282 Locate
trnI-CAU gene − 85711 85784 74 Locate
ycf2 gene + 85879 92709 6831 Locate
trnL-CAA gene − 93309 93389 81 Locate
ndhB gene − 93961 96168 2208 Locate
rps7 gene − 96439 96906 468 Locate
rps12 gene − 96960 97731 772 Locate
trnV-GAC gene + 99414 99485 72 Locate
rrn16S gene + 99712 101202 1491 Locate
trnI-GAU gene + 101500 102518 1019 Locate
trnA-UGC gene + 102583 103461 879 Locate
rrn23S gene + 103633 106443 2811 Locate
rrn4.5S gene − 106542 106806 265 Locate
rrn5S gene + 106900 107030 131 Locate
trnR-ACG gene + 107264 107337 74 Locate
trnN-GUU gene − 107900 107971 72 Locate
ycf1 gene + 108313 109443 1131 Locate
ndhF gene − 109337 111568 2232 Locate
trnL-UAG gene + 112972 113051 80 Locate
ccsA gene + 113140 114111 972 Locate
ndhD gene − 114344 115843 1500 Locate
psaC gene − 115964 116209 246 Locate
ndhE gene − 116465 116770 306 Locate
ndhG gene − 116985 117515 531 Locate
ndhI gene − 117874 118380 507 Locate
ndhA gene − 118461 120583 2123 Locate
ndhH gene − 120585 121766 1182 Locate
rps15 gene − 121881 122153 273 Locate
ycf1 gene − 122583 125969 3387 Locate
trnN-GUU gene + 128447 128518 72 Locate
trnR-ACG gene − 129081 129154 74 Locate
rrn5S gene − 129388 129518 131 Locate
rrn4.5S gene + 129612 129876 265 Locate
rrn23S gene − 129975 132785 2811 Locate
trnA-UGC gene − 132957 133835 879 Locate
trnI-GAU gene − 133900 134918 1019 Locate
rrn16S gene − 135216 136706 1491 Locate
trnV-GAC gene − 136933 137004 72 Locate
rps12 gene + 138666 139458 793 Locate
rps7 gene + 139512 139979 468 Locate
ndhB gene + 140250 142457 2208 Locate
trnL-CAA gene + 143029 143109 81 Locate
ycf2 gene − 143709 150539 6831 Locate
trnI-CAU gene + 150634 150707 74 Locate
rpl23 gene + 150873 151154 282 Locate
rpl2 gene + 151173 152651 1479 Locate
Status Available
Accession NC_053708.1
Length 152,761 bp
GC content 37.6%
Annotated genes 129
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 13 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources