Leonurus japonicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GTG · NC_038062.1 · 2–75 bp · −
psbA · NC_038062.1 · 308–1,366 bp · −
matK · NC_038062.1 · 1,901–3,436 bp · −
rps16 · NC_038062.1 · 5,104–6,247 bp · −
trnQ-TTG · NC_038062.1 · 6,924–6,995 bp · −
trnS-GCT · NC_038062.1 · 8,140–8,227 bp · −
atpA · NC_038062.1 · 10,033–11,556 bp · −
atpF · NC_038062.1 · 11,644–12,853 bp · −
atpH · NC_038062.1 · 13,215–13,460 bp · −
atpI · NC_038062.1 · 14,389–15,132 bp · −
rps2 · NC_038062.1 · 15,363–16,073 bp · −
rpoC2 · NC_038062.1 · 16,293–20,483 bp · −
rpoC1 · NC_038062.1 · 20,638–23,477 bp · −
rpoB · NC_038062.1 · 23,504–26,716 bp · −
psbM · NC_038062.1 · 29,592–29,696 bp · −
trnD-GTC · NC_038062.1 · 30,226–30,299 bp · −
trnY-GTA · NC_038062.1 · 30,414–30,497 bp · −
trnE-TTC · NC_038062.1 · 30,557–30,629 bp · −
trnS-TGA · NC_038062.1 · 35,094–35,186 bp · −
trnM-CAT · NC_038062.1 · 36,147–36,220 bp · −
rps14 · NC_038062.1 · 36,370–36,672 bp · −
psaB · NC_038062.1 · 36,800–39,004 bp · −
psaA · NC_038062.1 · 39,030–41,282 bp · −
ycf3 · NC_038062.1 · 42,012–43,952 bp · −
rps4 · NC_038062.1 · 44,640–45,245 bp · −
trnT-TGT · NC_038062.1 · 45,630–45,702 bp · −
ndhJ · NC_038062.1 · 47,998–48,474 bp · −
ndhK · NC_038062.1 · 48,575–49,252 bp · −
ndhC · NC_038062.1 · 49,305–49,667 bp · −
atpE · NC_038062.1 · 51,760–52,161 bp · −
atpB · NC_038062.1 · 52,158–53,654 bp · −
psbJ · NC_038062.1 · 63,304–63,426 bp · −
psbL · NC_038062.1 · 63,564–63,680 bp · −
psbF · NC_038062.1 · 63,704–63,823 bp · −
psbE · NC_038062.1 · 63,838–64,089 bp · −
trnW-CCA · NC_038062.1 · 65,519–65,592 bp · −
trnP-TGG · NC_038062.1 · 65,744–65,817 bp · −
rpl20 · NC_038062.1 · 67,567–67,953 bp · −
rps12 · NC_038062.1 · 68,716–68,829 bp · −
rps12 · NC_038062.1 · 96,632–96,874 bp · −
clpP · NC_038062.1 · 68,968–70,842 bp · −
psbN · NC_038062.1 · 73,159–73,290 bp · −
rpoA · NC_038062.1 · 76,714–77,733 bp · −
rps11 · NC_038062.1 · 77,805–78,221 bp · −
rpl36 · NC_038062.1 · 78,324–78,437 bp · −
infA · NC_038062.1 · 78,533–78,766 bp · −
rps8 · NC_038062.1 · 78,897–79,310 bp · −
rpl14 · NC_038062.1 · 79,487–79,855 bp · −
rpl16 · NC_038062.1 · 79,982–81,273 bp · −
rps3 · NC_038062.1 · 81,420–82,082 bp · −
rpl22 · NC_038062.1 · 82,067–82,531 bp · −
rps19 · NC_038062.1 · 82,591–82,863 bp · −
rpl2 · NC_038062.1 · 82,922–84,412 bp · −
rpl23 · NC_038062.1 · 84,431–84,712 bp · −
trnI-CAT · NC_038062.1 · 84,878–84,951 bp · −
trnL-CAA · NC_038062.1 · 92,449–92,529 bp · −
ndhB · NC_038062.1 · 93,074–95,285 bp · −
rps7 · NC_038062.1 · 95,560–96,027 bp · −
rrn16S · NC_038062.1 · 98,790–100,280 bp · −
rrn23S · NC_038062.1 · 102,713–105,523 bp · −
rrn4.5S · NC_038062.1 · 105,622–105,886 bp · −
trnN-GTT · NC_038062.1 · 106,981–107,052 bp · −
ndhF · NC_038062.1 · 108,442–110,664 bp · −
ndhD · NC_038062.1 · 113,278–114,687 bp · −
psaC · NC_038062.1 · 114,900–115,145 bp · −
ndhE · NC_038062.1 · 115,410–115,715 bp · −
ndhG · NC_038062.1 · 115,923–116,453 bp · −
ndhI · NC_038062.1 · 116,838–117,344 bp · −
ndhA · NC_038062.1 · 117,431–119,601 bp · −
ndhH · NC_038062.1 · 119,603–120,784 bp · −
rps15 · NC_038062.1 · 120,885–121,157 bp · −
ycf1 · NC_038062.1 · 121,544–127,060 bp · −
trnR-ACG · NC_038062.1 · 128,030–128,103 bp · −
rrn5S · NC_038062.1 · 128,328–128,458 bp · −
trnV-GAC · NC_038062.1 · 135,876–135,947 bp · −
ycf15 · NC_038062.1 · 142,250–142,498 bp · −
ycf2 · NC_038062.1 · 142,541–149,398 bp · −
psbK · NC_038062.1 · 7,332–7,517 bp · +
psbI · NC_038062.1 · 7,902–8,012 bp · +
trnR-TCT · NC_038062.1 · 9,865–9,936 bp · +
trnC-GCA · NC_038062.1 · 27,818–27,888 bp · +
petN · NC_038062.1 · 28,712–28,807 bp · +
trnT-GGT · NC_038062.1 · 31,220–31,291 bp · +
psbD · NC_038062.1 · 32,432–33,493 bp · +
psbC · NC_038062.1 · 33,441–34,862 bp · +
psbZ · NC_038062.1 · 35,513–35,701 bp · +
trnG-GCC · NC_038062.1 · 35,928–35,998 bp · +
trnS-GGA · NC_038062.1 · 44,269–44,355 bp · +
trnF-GAA · NC_038062.1 · 47,246–47,318 bp · +
trnM-CAT · NC_038062.1 · 51,470–51,542 bp · +
rbcL · NC_038062.1 · 54,465–55,910 bp · +
accD · NC_038062.1 · 56,600–58,066 bp · +
psaI · NC_038062.1 · 58,757–58,867 bp · +
ycf4 · NC_038062.1 · 59,306–59,860 bp · +
cemA · NC_038062.1 · 60,421–61,110 bp · +
petA · NC_038062.1 · 61,327–62,289 bp · +
petL · NC_038062.1 · 65,010–65,105 bp · +
petG · NC_038062.1 · 65,280–65,393 bp · +
psaJ · NC_038062.1 · 66,092–66,226 bp · +
rpl33 · NC_038062.1 · 66,698–66,898 bp · +
rps18 · NC_038062.1 · 67,046–67,351 bp · +
rps12 · NC_038062.1 · 137,564–137,806 bp · +
psbB · NC_038062.1 · 71,274–72,800 bp · +
psbT · NC_038062.1 · 72,991–73,098 bp · +
psbH · NC_038062.1 · 73,394–73,615 bp · +
petB · NC_038062.1 · 73,740–75,126 bp · +
petD · NC_038062.1 · 75,321–76,545 bp · +
ycf2 · NC_038062.1 · 85,040–91,897 bp · +
ycf15 · NC_038062.1 · 91,940–92,188 bp · +
trnV-GAC · NC_038062.1 · 98,491–98,562 bp · +
rrn5S · NC_038062.1 · 105,980–106,110 bp · +
trnR-ACG · NC_038062.1 · 106,335–106,408 bp · +
ycf1 · NC_038062.1 · 107,378–108,496 bp · +
rpl32 · NC_038062.1 · 111,176–111,352 bp · +
trnL-TAG · NC_038062.1 · 111,950–112,029 bp · +
ccsA · NC_038062.1 · 112,137–113,099 bp · +
trnN-GTT · NC_038062.1 · 127,386–127,457 bp · +
rrn4.5S · NC_038062.1 · 128,552–128,816 bp · +
rrn23S · NC_038062.1 · 128,915–131,725 bp · +
rps7 · NC_038062.1 · 138,411–138,878 bp · +
ndhB · NC_038062.1 · 139,153–141,364 bp · +
trnL-CAA · NC_038062.1 · 141,909–141,989 bp · +
trnI-CAT · NC_038062.1 · 149,487–149,560 bp · +
rpl23 · NC_038062.1 · 149,726–150,007 bp · +
rpl2 · NC_038062.1 · 150,026–151,516 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Leonurus japonicus
ANNOTATED PLASTOME
NC_038062.1
151,610 bp · 124 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37902 75805 113708 151610 bp
Forward strand 5′ → 3′
psbK psbI trnR-TCT trnC-GCA petN trnT-GGT psbD psbC psbZ trnG-GCC trnS-GGA trnF-GAA trnM-CAT rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn5S trnR-ACG ycf1 rpl32 trnL-TAG ccsA trnN-GTT rrn4.5S rrn23S rps12 rps7 ndhB trnL-CAA trnI-CAT rpl23 rpl2
trnH-GTG psbA matK rps16 trnQ-TTG trnS-GCT atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GTC trnY-GTA trnE-TTC trnS-TGA trnM-CAT rps14 psaB psaA ycf3 rps4 trnT-TGT ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-TGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAT trnL-CAA ndhB rps7 rps12 rrn16S rrn23S rrn4.5S trnN-GTT ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
125 local segments
Gene Type Group Strand Start End Length
trnH-GTG gene − 2 75 74 Locate
psbA gene − 308 1366 1059 Locate
matK gene − 1901 3436 1536 Locate
rps16 gene − 5104 6247 1144 Locate
trnQ-TTG gene − 6924 6995 72 Locate
psbK gene + 7332 7517 186 Locate
psbI gene + 7902 8012 111 Locate
trnS-GCT gene − 8140 8227 88 Locate
trnR-TCT gene + 9865 9936 72 Locate
atpA gene − 10033 11556 1524 Locate
atpF gene − 11644 12853 1210 Locate
atpH gene − 13215 13460 246 Locate
atpI gene − 14389 15132 744 Locate
rps2 gene − 15363 16073 711 Locate
rpoC2 gene − 16293 20483 4191 Locate
rpoC1 gene − 20638 23477 2840 Locate
rpoB gene − 23504 26716 3213 Locate
trnC-GCA gene + 27818 27888 71 Locate
petN gene + 28712 28807 96 Locate
psbM gene − 29592 29696 105 Locate
trnD-GTC gene − 30226 30299 74 Locate
trnY-GTA gene − 30414 30497 84 Locate
trnE-TTC gene − 30557 30629 73 Locate
trnT-GGT gene + 31220 31291 72 Locate
psbD gene + 32432 33493 1062 Locate
psbC gene + 33441 34862 1422 Locate
trnS-TGA gene − 35094 35186 93 Locate
psbZ gene + 35513 35701 189 Locate
trnG-GCC gene + 35928 35998 71 Locate
trnM-CAT gene − 36147 36220 74 Locate
rps14 gene − 36370 36672 303 Locate
psaB gene − 36800 39004 2205 Locate
psaA gene − 39030 41282 2253 Locate
ycf3 gene − 42012 43952 1941 Locate
trnS-GGA gene + 44269 44355 87 Locate
rps4 gene − 44640 45245 606 Locate
trnT-TGT gene − 45630 45702 73 Locate
trnF-GAA gene + 47246 47318 73 Locate
ndhJ gene − 47998 48474 477 Locate
ndhK gene − 48575 49252 678 Locate
ndhC gene − 49305 49667 363 Locate
trnM-CAT gene + 51470 51542 73 Locate
atpE gene − 51760 52161 402 Locate
atpB gene − 52158 53654 1497 Locate
rbcL gene + 54465 55910 1446 Locate
accD gene + 56600 58066 1467 Locate
psaI gene + 58757 58867 111 Locate
ycf4 gene + 59306 59860 555 Locate
cemA gene + 60421 61110 690 Locate
petA gene + 61327 62289 963 Locate
psbJ gene − 63304 63426 123 Locate
psbL gene − 63564 63680 117 Locate
psbF gene − 63704 63823 120 Locate
psbE gene − 63838 64089 252 Locate
petL gene + 65010 65105 96 Locate
petG gene + 65280 65393 114 Locate
trnW-CCA gene − 65519 65592 74 Locate
trnP-TGG gene − 65744 65817 74 Locate
psaJ gene + 66092 66226 135 Locate
rpl33 gene + 66698 66898 201 Locate
rps18 gene + 67046 67351 306 Locate
rpl20 gene − 67567 67953 387 Locate
rps12 gene − 68716 68829 114 Locate
clpP gene − 68968 70842 1875 Locate
psbB gene + 71274 72800 1527 Locate
psbT gene + 72991 73098 108 Locate
psbN gene − 73159 73290 132 Locate
psbH gene + 73394 73615 222 Locate
petB gene + 73740 75126 1387 Locate
petD gene + 75321 76545 1225 Locate
rpoA gene − 76714 77733 1020 Locate
rps11 gene − 77805 78221 417 Locate
rpl36 gene − 78324 78437 114 Locate
infA gene − 78533 78766 234 Locate
rps8 gene − 78897 79310 414 Locate
rpl14 gene − 79487 79855 369 Locate
rpl16 gene − 79982 81273 1292 Locate
rps3 gene − 81420 82082 663 Locate
rpl22 gene − 82067 82531 465 Locate
rps19 gene − 82591 82863 273 Locate
rpl2 gene − 82922 84412 1491 Locate
rpl23 gene − 84431 84712 282 Locate
trnI-CAT gene − 84878 84951 74 Locate
ycf2 gene + 85040 91897 6858 Locate
ycf15 gene + 91940 92188 249 Locate
trnL-CAA gene − 92449 92529 81 Locate
ndhB gene − 93074 95285 2212 Locate
rps7 gene − 95560 96027 468 Locate
rps12 gene − 96632 96874 243 Locate
trnV-GAC gene + 98491 98562 72 Locate
rrn16S gene − 98790 100280 1491 Locate
rrn23S gene − 102713 105523 2811 Locate
rrn4.5S gene − 105622 105886 265 Locate
rrn5S gene + 105980 106110 131 Locate
trnR-ACG gene + 106335 106408 74 Locate
trnN-GTT gene − 106981 107052 72 Locate
ycf1 gene + 107378 108496 1119 Locate
ndhF gene − 108442 110664 2223 Locate
rpl32 gene + 111176 111352 177 Locate
trnL-TAG gene + 111950 112029 80 Locate
ccsA gene + 112137 113099 963 Locate
ndhD gene − 113278 114687 1410 Locate
psaC gene − 114900 115145 246 Locate
ndhE gene − 115410 115715 306 Locate
ndhG gene − 115923 116453 531 Locate
ndhI gene − 116838 117344 507 Locate
ndhA gene − 117431 119601 2171 Locate
ndhH gene − 119603 120784 1182 Locate
rps15 gene − 120885 121157 273 Locate
ycf1 gene − 121544 127060 5517 Locate
trnN-GTT gene + 127386 127457 72 Locate
trnR-ACG gene − 128030 128103 74 Locate
rrn5S gene − 128328 128458 131 Locate
rrn4.5S gene + 128552 128816 265 Locate
rrn23S gene + 128915 131725 2811 Locate
trnV-GAC gene − 135876 135947 72 Locate
rps12 gene + 137564 137806 243 Locate
rps7 gene + 138411 138878 468 Locate
ndhB gene + 139153 141364 2212 Locate
trnL-CAA gene + 141909 141989 81 Locate
ycf15 gene − 142250 142498 249 Locate
ycf2 gene − 142541 149398 6858 Locate
trnI-CAT gene + 149487 149560 74 Locate
rpl23 gene + 149726 150007 282 Locate
rpl2 gene + 150026 151516 1491 Locate
Status Available
Accession NC_038062.1
Length 151,610 bp
GC content 38.4%
Annotated genes 124
Gene sequence records 0
Translation Rna 29 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 7
SSR 67
Direct 23
Inverted 10
Palindromic 9
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources