Lycopus lucidus var. hirtus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT980792.1 · 11–84 bp · −
psbA · MT980792.1 · 416–1,474 bp · −
trnK-UUU · MT980792.1 · 1,705–4,296 bp · −
matK · MT980792.1 · 2,031–3,560 bp · −
rps16 · MT980792.1 · 4,852–5,965 bp · −
trnQ-UUG · MT980792.1 · 6,981–7,052 bp · −
trnS-GCU · MT980792.1 · 8,318–8,405 bp · −
atpA · MT980792.1 · 10,235–11,758 bp · −
atpF · MT980792.1 · 11,855–13,108 bp · −
atpH · MT980792.1 · 13,382–13,627 bp · −
atpI · MT980792.1 · 14,279–15,022 bp · −
rps2 · MT980792.1 · 15,258–15,968 bp · −
rpoC2 · MT980792.1 · 16,184–20,371 bp · −
rpoC1 · MT980792.1 · 20,530–23,329 bp · −
rpoB · MT980792.1 · 23,356–26,568 bp · −
psbM · MT980792.1 · 29,118–29,222 bp · −
trnD-GUC · MT980792.1 · 29,746–29,819 bp · −
trnY-GUA · MT980792.1 · 29,930–30,013 bp · −
trnE-UUC · MT980792.1 · 30,095–30,167 bp · −
trnS-UGA · MT980792.1 · 34,887–34,979 bp · −
trnM-CAU · MT980792.1 · 36,012–36,085 bp · −
rps14 · MT980792.1 · 36,235–36,537 bp · −
psaB · MT980792.1 · 36,660–38,864 bp · −
psaA · MT980792.1 · 38,890–41,142 bp · −
ycf3 · MT980792.1 · 41,966–43,911 bp · −
rps4 · MT980792.1 · 44,911–45,516 bp · −
trnT-UGU · MT980792.1 · 45,884–45,956 bp · −
ndhJ · MT980792.1 · 48,254–48,730 bp · −
ndhK · MT980792.1 · 48,841–49,518 bp · −
ndhC · MT980792.1 · 49,570–49,932 bp · −
trnV-UAC · MT980792.1 · 50,891–51,539 bp · −
atpE · MT980792.1 · 52,003–52,404 bp · −
atpB · MT980792.1 · 52,401–53,897 bp · −
psbJ · MT980792.1 · 63,484–63,606 bp · −
psbL · MT980792.1 · 63,741–63,857 bp · −
psbF · MT980792.1 · 63,881–64,000 bp · −
psbE · MT980792.1 · 64,015–64,266 bp · −
trnW-CCA · MT980792.1 · 65,673–65,746 bp · −
trnP-UGG · MT980792.1 · 65,920–65,993 bp · −
rpl20 · MT980792.1 · 67,783–68,169 bp · −
rps12 · MT980792.1 · 68,988–69,101 bp · −
rps12 · MT980792.1 · 96,398–97,191 bp · −
clpP · MT980792.1 · 69,225–71,138 bp · −
psbN · MT980792.1 · 73,472–73,603 bp · −
rpoA · MT980792.1 · 77,001–78,008 bp · −
rps11 · MT980792.1 · 78,079–78,495 bp · −
rpl36 · MT980792.1 · 78,605–78,718 bp · −
infA · MT980792.1 · 78,814–79,047 bp · −
rps8 · MT980792.1 · 79,174–79,578 bp · −
rpl14 · MT980792.1 · 79,764–80,132 bp · −
rpl16 · MT980792.1 · 80,260–80,670 bp · −
rps3 · MT980792.1 · 81,692–82,354 bp · −
rpl22 · MT980792.1 · 82,339–82,806 bp · −
rps19 · MT980792.1 · 82,876–83,154 bp · −
rpl2 · MT980792.1 · 83,214–84,703 bp · −
rpl23 · MT980792.1 · 84,722–85,003 bp · −
trnI-CAU · MT980792.1 · 85,169–85,242 bp · −
trnL-CAA · MT980792.1 · 92,762–92,842 bp · −
ndhB · MT980792.1 · 93,403–95,610 bp · −
rps7 · MT980792.1 · 95,877–96,344 bp · −
trnN-GUU · MT980792.1 · 107,279–107,350 bp · −
ndhF · MT980792.1 · 108,704–110,935 bp · −
ndhD · MT980792.1 · 113,742–115,271 bp · −
psaC · MT980792.1 · 115,366–115,611 bp · −
ndhE · MT980792.1 · 115,860–116,165 bp · −
ndhG · MT980792.1 · 116,384–116,914 bp · −
ndhI · MT980792.1 · 117,291–117,803 bp · −
ndhA · MT980792.1 · 117,884–119,978 bp · −
ndhH · MT980792.1 · 119,980–121,161 bp · −
rps15 · MT980792.1 · 121,261–121,533 bp · −
ycf1 · MT980792.1 · 121,976–127,528 bp · −
trnR-ACG · MT980792.1 · 128,454–128,527 bp · −
rrn5S · MT980792.1 · 128,767–128,897 bp · −
rrn4.5S · MT980792.1 · 128,991–129,260 bp · −
rrn23S · MT980792.1 · 129,359–132,169 bp · −
trnA-UGC · MT980792.1 · 132,329–133,207 bp · −
trnI-GAU · MT980792.1 · 133,272–134,290 bp · −
rrn16S · MT980792.1 · 134,589–136,079 bp · −
trnV-GAC · MT980792.1 · 136,306–136,377 bp · −
ycf15 · MT980792.1 · 142,707–142,904 bp · −
ycf2 · MT980792.1 · 143,038–149,877 bp · −
psbK · MT980792.1 · 7,448–7,633 bp · +
psbI · MT980792.1 · 8,025–8,135 bp · +
trnT-CGU · MT980792.1 · 9,105–9,867 bp · +
trnR-UCU · MT980792.1 · 10,054–10,125 bp · +
trnC-GCA · MT980792.1 · 27,745–27,815 bp · +
petN · MT980792.1 · 27,973–28,068 bp · +
trnT-GGU · MT980792.1 · 30,732–30,803 bp · +
psbD · MT980792.1 · 32,210–33,271 bp · +
psbC · MT980792.1 · 33,219–34,640 bp · +
psbZ · MT980792.1 · 35,314–35,502 bp · +
trnG-GCC · MT980792.1 · 35,781–35,851 bp · +
trnS-GGA · MT980792.1 · 44,544–44,630 bp · +
trnL-UAA · MT980792.1 · 46,649–47,217 bp · +
trnF-GAA · MT980792.1 · 47,507–47,579 bp · +
trnM-CAU · MT980792.1 · 51,720–51,792 bp · +
rbcL · MT980792.1 · 54,692–56,125 bp · +
accD · MT980792.1 · 56,830–58,311 bp · +
psaI · MT980792.1 · 58,785–58,895 bp · +
ycf4 · MT980792.1 · 59,350–59,904 bp · +
cemA · MT980792.1 · 60,583–61,272 bp · +
petA · MT980792.1 · 61,486–62,448 bp · +
petL · MT980792.1 · 65,173–65,268 bp · +
petG · MT980792.1 · 65,445–65,558 bp · +
psaJ · MT980792.1 · 66,273–66,407 bp · +
rpl33 · MT980792.1 · 66,863–67,063 bp · +
rps18 · MT980792.1 · 67,245–67,550 bp · +
rps12 · MT980792.1 · 138,017–138,810 bp · +
psbB · MT980792.1 · 71,587–73,113 bp · +
psbT · MT980792.1 · 73,297–73,398 bp · +
psbH · MT980792.1 · 73,709–73,930 bp · +
petB · MT980792.1 · 74,054–75,426 bp · +
petD · MT980792.1 · 75,614–76,815 bp · +
ycf2 · MT980792.1 · 85,331–92,170 bp · +
ycf15 · MT980792.1 · 92,304–92,501 bp · +
trnV-GAC · MT980792.1 · 98,831–98,902 bp · +
rrn16S · MT980792.1 · 99,129–100,619 bp · +
trnI-GAU · MT980792.1 · 100,918–101,936 bp · +
trnA-UGC · MT980792.1 · 102,001–102,879 bp · +
rrn23S · MT980792.1 · 103,039–105,849 bp · +
rrn4.5S · MT980792.1 · 105,948–106,217 bp · +
rrn5S · MT980792.1 · 106,311–106,441 bp · +
trnR-ACG · MT980792.1 · 106,681–106,754 bp · +
ycf1 · MT980792.1 · 107,569–108,810 bp · +
rpl32 · MT980792.1 · 111,410–111,580 bp · +
trnL-UAG · MT980792.1 · 112,339–112,418 bp · +
ccsA · MT980792.1 · 112,518–113,495 bp · +
trnN-GUU · MT980792.1 · 127,858–127,929 bp · +
rps7 · MT980792.1 · 138,864–139,331 bp · +
ndhB · MT980792.1 · 139,598–141,805 bp · +
trnL-CAA · MT980792.1 · 142,366–142,446 bp · +
trnI-CAU · MT980792.1 · 149,966–150,039 bp · +
rpl23 · MT980792.1 · 150,205–150,486 bp · +
rpl2 · MT980792.1 · 150,505–151,994 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lycopus lucidus var. hirtus
ANNOTATED PLASTOME
MT980792.1
152,096 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38024 76048 114072 152096 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 416 1474 1059 Locate
trnK-UUU gene − 1705 4296 2592 Locate
matK gene − 2031 3560 1530 Locate
rps16 gene − 4852 5965 1114 Locate
trnQ-UUG gene − 6981 7052 72 Locate
psbK gene + 7448 7633 186 Locate
psbI gene + 8025 8135 111 Locate
trnS-GCU gene − 8318 8405 88 Locate
trnT-CGU gene + 9105 9867 763 Locate
trnR-UCU gene + 10054 10125 72 Locate
atpA gene − 10235 11758 1524 Locate
atpF gene − 11855 13108 1254 Locate
atpH gene − 13382 13627 246 Locate
atpI gene − 14279 15022 744 Locate
rps2 gene − 15258 15968 711 Locate
rpoC2 gene − 16184 20371 4188 Locate
rpoC1 gene − 20530 23329 2800 Locate
rpoB gene − 23356 26568 3213 Locate
trnC-GCA gene + 27745 27815 71 Locate
petN gene + 27973 28068 96 Locate
psbM gene − 29118 29222 105 Locate
trnD-GUC gene − 29746 29819 74 Locate
trnY-GUA gene − 29930 30013 84 Locate
trnE-UUC gene − 30095 30167 73 Locate
trnT-GGU gene + 30732 30803 72 Locate
psbD gene + 32210 33271 1062 Locate
psbC gene + 33219 34640 1422 Locate
trnS-UGA gene − 34887 34979 93 Locate
psbZ gene + 35314 35502 189 Locate
trnG-GCC gene + 35781 35851 71 Locate
trnM-CAU gene − 36012 36085 74 Locate
rps14 gene − 36235 36537 303 Locate
psaB gene − 36660 38864 2205 Locate
psaA gene − 38890 41142 2253 Locate
ycf3 gene − 41966 43911 1946 Locate
trnS-GGA gene + 44544 44630 87 Locate
rps4 gene − 44911 45516 606 Locate
trnT-UGU gene − 45884 45956 73 Locate
trnL-UAA gene + 46649 47217 569 Locate
trnF-GAA gene + 47507 47579 73 Locate
ndhJ gene − 48254 48730 477 Locate
ndhK gene − 48841 49518 678 Locate
ndhC gene − 49570 49932 363 Locate
trnV-UAC gene − 50891 51539 649 Locate
trnM-CAU gene + 51720 51792 73 Locate
atpE gene − 52003 52404 402 Locate
atpB gene − 52401 53897 1497 Locate
rbcL gene + 54692 56125 1434 Locate
accD gene + 56830 58311 1482 Locate
psaI gene + 58785 58895 111 Locate
ycf4 gene + 59350 59904 555 Locate
cemA gene + 60583 61272 690 Locate
petA gene + 61486 62448 963 Locate
psbJ gene − 63484 63606 123 Locate
psbL gene − 63741 63857 117 Locate
psbF gene − 63881 64000 120 Locate
psbE gene − 64015 64266 252 Locate
petL gene + 65173 65268 96 Locate
petG gene + 65445 65558 114 Locate
trnW-CCA gene − 65673 65746 74 Locate
trnP-UGG gene − 65920 65993 74 Locate
psaJ gene + 66273 66407 135 Locate
rpl33 gene + 66863 67063 201 Locate
rps18 gene + 67245 67550 306 Locate
rpl20 gene − 67783 68169 387 Locate
rps12 gene − 68988 69101 114 Locate
clpP gene − 69225 71138 1914 Locate
psbB gene + 71587 73113 1527 Locate
psbT gene + 73297 73398 102 Locate
psbN gene − 73472 73603 132 Locate
psbH gene + 73709 73930 222 Locate
petB gene + 74054 75426 1373 Locate
petD gene + 75614 76815 1202 Locate
rpoA gene − 77001 78008 1008 Locate
rps11 gene − 78079 78495 417 Locate
rpl36 gene − 78605 78718 114 Locate
infA gene − 78814 79047 234 Locate
rps8 gene − 79174 79578 405 Locate
rpl14 gene − 79764 80132 369 Locate
rpl16 gene − 80260 80670 411 Locate
rps3 gene − 81692 82354 663 Locate
rpl22 gene − 82339 82806 468 Locate
rps19 gene − 82876 83154 279 Locate
rpl2 gene − 83214 84703 1490 Locate
rpl23 gene − 84722 85003 282 Locate
trnI-CAU gene − 85169 85242 74 Locate
ycf2 gene + 85331 92170 6840 Locate
ycf15 gene + 92304 92501 198 Locate
trnL-CAA gene − 92762 92842 81 Locate
ndhB gene − 93403 95610 2208 Locate
rps7 gene − 95877 96344 468 Locate
rps12 gene − 96398 97191 794 Locate
trnV-GAC gene + 98831 98902 72 Locate
rrn16S gene + 99129 100619 1491 Locate
trnI-GAU gene + 100918 101936 1019 Locate
trnA-UGC gene + 102001 102879 879 Locate
rrn23S gene + 103039 105849 2811 Locate
rrn4.5S gene + 105948 106217 270 Locate
rrn5S gene + 106311 106441 131 Locate
trnR-ACG gene + 106681 106754 74 Locate
trnN-GUU gene − 107279 107350 72 Locate
ycf1 gene + 107569 108810 1242 Locate
ndhF gene − 108704 110935 2232 Locate
rpl32 gene + 111410 111580 171 Locate
trnL-UAG gene + 112339 112418 80 Locate
ccsA gene + 112518 113495 978 Locate
ndhD gene − 113742 115271 1530 Locate
psaC gene − 115366 115611 246 Locate
ndhE gene − 115860 116165 306 Locate
ndhG gene − 116384 116914 531 Locate
ndhI gene − 117291 117803 513 Locate
ndhA gene − 117884 119978 2095 Locate
ndhH gene − 119980 121161 1182 Locate
rps15 gene − 121261 121533 273 Locate
ycf1 gene − 121976 127528 5553 Locate
trnN-GUU gene + 127858 127929 72 Locate
trnR-ACG gene − 128454 128527 74 Locate
rrn5S gene − 128767 128897 131 Locate
rrn4.5S gene − 128991 129260 270 Locate
rrn23S gene − 129359 132169 2811 Locate
trnA-UGC gene − 132329 133207 879 Locate
trnI-GAU gene − 133272 134290 1019 Locate
rrn16S gene − 134589 136079 1491 Locate
trnV-GAC gene − 136306 136377 72 Locate
rps12 gene + 138017 138810 794 Locate
rps7 gene + 138864 139331 468 Locate
ndhB gene + 139598 141805 2208 Locate
trnL-CAA gene + 142366 142446 81 Locate
ycf15 gene − 142707 142904 198 Locate
ycf2 gene − 143038 149877 6840 Locate
trnI-CAU gene + 149966 150039 74 Locate
rpl23 gene + 150205 150486 282 Locate
rpl2 gene + 150505 151994 1490 Locate
Status Available
Accession MT980792.1
Length 152,096 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources