Coordinate-aware organelle record

Lycopus lucidus var. hirtus chloroplast genome

Available MT980792.1 152,096 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	10	84	74
psbA	gene	photosystem-ii	−	415	1474	1059
trnK-UUU	gene	translation-rna	−	1704	4296	2592
matK	gene	other	−	2030	3560	1530
rps16	gene	ribosomal-protein	−	4851	5965	1114
trnQ-UUG	gene	translation-rna	−	6980	7052	72
psbK	gene	photosystem-ii	+	7447	7633	186
psbI	gene	photosystem-ii	+	8024	8135	111
trnS-GCU	gene	translation-rna	−	8317	8405	88
trnT-CGU	gene	translation-rna	+	9104	9867	763
trnR-UCU	gene	translation-rna	+	10053	10125	72
atpA	gene	atp-synthase	−	10234	11758	1524
atpF	gene	atp-synthase	−	11854	13108	1254
atpH	gene	atp-synthase	−	13381	13627	246
atpI	gene	atp-synthase	−	14278	15022	744
rps2	gene	ribosomal-protein	−	15257	15968	711
rpoC2	gene	rna-polymerase	−	16183	20371	4188
rpoC1	gene	rna-polymerase	−	20529	23329	2800
rpoB	gene	rna-polymerase	−	23355	26568	3213
trnC-GCA	gene	translation-rna	+	27744	27815	71
petN	gene	cytochrome	+	27972	28068	96
psbM	gene	photosystem-ii	−	29117	29222	105
trnD-GUC	gene	translation-rna	−	29745	29819	74
trnY-GUA	gene	translation-rna	−	29929	30013	84
trnE-UUC	gene	translation-rna	−	30094	30167	73
trnT-GGU	gene	translation-rna	+	30731	30803	72
psbD	gene	photosystem-ii	+	32209	33271	1062
psbC	gene	photosystem-ii	+	33218	34640	1422
trnS-UGA	gene	translation-rna	−	34886	34979	93
psbZ	gene	photosystem-ii	+	35313	35502	189
trnG-GCC	gene	translation-rna	+	35780	35851	71
trnM-CAU	gene	translation-rna	−	36011	36085	74
rps14	gene	ribosomal-protein	−	36234	36537	303
psaB	gene	photosystem-i	−	36659	38864	2205
psaA	gene	photosystem-i	−	38889	41142	2253
ycf3	gene	other	−	41965	43911	1946
trnS-GGA	gene	translation-rna	+	44543	44630	87
rps4	gene	ribosomal-protein	−	44910	45516	606
trnT-UGU	gene	translation-rna	−	45883	45956	73
trnL-UAA	gene	translation-rna	+	46648	47217	569
trnF-GAA	gene	translation-rna	+	47506	47579	73
ndhJ	gene	nad-dehydrogenase	−	48253	48730	477
ndhK	gene	nad-dehydrogenase	−	48840	49518	678
ndhC	gene	nad-dehydrogenase	−	49569	49932	363
trnV-UAC	gene	translation-rna	−	50890	51539	649
trnM-CAU	gene	translation-rna	+	51719	51792	73
atpE	gene	atp-synthase	−	52002	52404	402
atpB	gene	atp-synthase	−	52400	53897	1497
rbcL	gene	other	+	54691	56125	1434
accD	gene	other	+	56829	58311	1482
psaI	gene	photosystem-i	+	58784	58895	111
ycf4	gene	other	+	59349	59904	555
cemA	gene	other	+	60582	61272	690
petA	gene	cytochrome	+	61485	62448	963
psbJ	gene	photosystem-ii	−	63483	63606	123
psbL	gene	photosystem-ii	−	63740	63857	117
psbF	gene	photosystem-ii	−	63880	64000	120
psbE	gene	photosystem-ii	−	64014	64266	252
petL	gene	cytochrome	+	65172	65268	96
petG	gene	cytochrome	+	65444	65558	114
trnW-CCA	gene	translation-rna	−	65672	65746	74
trnP-UGG	gene	translation-rna	−	65919	65993	74
psaJ	gene	photosystem-i	+	66272	66407	135
rpl33	gene	ribosomal-protein	+	66862	67063	201
rps18	gene	ribosomal-protein	+	67244	67550	306
rpl20	gene	ribosomal-protein	−	67782	68169	387
rps12	gene	ribosomal-protein	−	68987	97191	28204
rps12	gene	ribosomal-protein	+	68987	138810	69823
clpP	gene	other	−	69224	71138	1914
psbB	gene	photosystem-ii	+	71586	73113	1527
psbT	gene	photosystem-ii	+	73296	73398	102
psbN	gene	photosystem-ii	−	73471	73603	132
psbH	gene	photosystem-ii	+	73708	73930	222
petB	gene	cytochrome	+	74053	75426	1373
petD	gene	cytochrome	+	75613	76815	1202
rpoA	gene	rna-polymerase	−	77000	78008	1008
rps11	gene	ribosomal-protein	−	78078	78495	417
rpl36	gene	ribosomal-protein	−	78604	78718	114
infA	gene	other	−	78813	79047	234
rps8	gene	ribosomal-protein	−	79173	79578	405
rpl14	gene	ribosomal-protein	−	79763	80132	369
rpl16	gene	ribosomal-protein	−	80259	80670	411
rps3	gene	ribosomal-protein	−	81691	82354	663
rpl22	gene	ribosomal-protein	−	82338	82806	468
rps19	gene	ribosomal-protein	−	82875	83154	279
rpl2	gene	ribosomal-protein	−	83213	84703	1490
rpl23	gene	ribosomal-protein	−	84721	85003	282
trnI-CAU	gene	translation-rna	−	85168	85242	74
ycf2	gene	other	+	85330	92170	6840
ycf15	gene	other	+	92303	92501	198
trnL-CAA	gene	translation-rna	−	92761	92842	81
ndhB	gene	nad-dehydrogenase	−	93402	95610	2208
rps7	gene	ribosomal-protein	−	95876	96344	468
trnV-GAC	gene	translation-rna	+	98830	98902	72
rrn16S	gene	ribosomal-rna	+	99128	100619	1491
trnI-GAU	gene	translation-rna	+	100917	101936	1019
trnA-UGC	gene	translation-rna	+	102000	102879	879
rrn23S	gene	ribosomal-rna	+	103038	105849	2811
rrn4.5S	gene	ribosomal-rna	+	105947	106217	270
rrn5S	gene	ribosomal-rna	+	106310	106441	131
trnR-ACG	gene	translation-rna	+	106680	106754	74
trnN-GUU	gene	translation-rna	−	107278	107350	72
ycf1	gene	other	+	107568	108810	1242
ndhF	gene	nad-dehydrogenase	−	108703	110935	2232
rpl32	gene	ribosomal-protein	+	111409	111580	171
trnL-UAG	gene	translation-rna	+	112338	112418	80
ccsA	gene	other	+	112517	113495	978
ndhD	gene	nad-dehydrogenase	−	113741	115271	1530
psaC	gene	photosystem-i	−	115365	115611	246
ndhE	gene	nad-dehydrogenase	−	115859	116165	306
ndhG	gene	nad-dehydrogenase	−	116383	116914	531
ndhI	gene	nad-dehydrogenase	−	117290	117803	513
ndhA	gene	nad-dehydrogenase	−	117883	119978	2095
ndhH	gene	nad-dehydrogenase	−	119979	121161	1182
rps15	gene	ribosomal-protein	−	121260	121533	273
ycf1	gene	other	−	121975	127528	5553
trnN-GUU	gene	translation-rna	+	127857	127929	72
trnR-ACG	gene	translation-rna	−	128453	128527	74
rrn5S	gene	ribosomal-rna	−	128766	128897	131
rrn4.5S	gene	ribosomal-rna	−	128990	129260	270
rrn23S	gene	ribosomal-rna	−	129358	132169	2811
trnA-UGC	gene	translation-rna	−	132328	133207	879
trnI-GAU	gene	translation-rna	−	133271	134290	1019
rrn16S	gene	ribosomal-rna	−	134588	136079	1491
trnV-GAC	gene	translation-rna	−	136305	136377	72
rps7	gene	ribosomal-protein	+	138863	139331	468
ndhB	gene	nad-dehydrogenase	+	139597	141805	2208
trnL-CAA	gene	translation-rna	+	142365	142446	81
ycf15	gene	other	−	142706	142904	198
ycf2	gene	other	−	143037	149877	6840
trnI-CAU	gene	translation-rna	+	149965	150039	74
rpl23	gene	ribosomal-protein	+	150204	150486	282
rpl2	gene	ribosomal-protein	+	150504	151994	1490

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMT980792.1DNA · accDMT980792DNA · atpBMT980792DNA · matKMT980792DNA · ndhFMT980792DNA · psbAMT980792DNA · rbcLMT980792DNA · rps12MT980792DNA · ycf1MT980792