Lycopus lucidus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV558881.1 · 17–90 bp · −
psbA · PV558881.1 · 422–1,480 bp · −
trnK-UUU · PV558881.1 · 1,711–4,302 bp · −
matK · PV558881.1 · 2,037–3,566 bp · −
rps16 · PV558881.1 · 4,857–5,970 bp · −
trnQ-UUG · PV558881.1 · 6,983–7,054 bp · −
trnS-GCU · PV558881.1 · 8,321–8,408 bp · −
atpA · PV558881.1 · 10,236–11,759 bp · −
atpF · PV558881.1 · 11,855–13,107 bp · −
atpH · PV558881.1 · 13,381–13,626 bp · −
atpI · PV558881.1 · 14,277–15,020 bp · −
rps2 · PV558881.1 · 15,256–15,966 bp · −
rpoC2 · PV558881.1 · 16,183–20,370 bp · −
rpoC1 · PV558881.1 · 20,529–23,319 bp · −
rpoB · PV558881.1 · 23,346–26,558 bp · −
psbM · PV558881.1 · 29,109–29,213 bp · −
trnD-GUC · PV558881.1 · 29,737–29,810 bp · −
trnY-GUA · PV558881.1 · 29,921–30,004 bp · −
trnE-UUC · PV558881.1 · 30,086–30,158 bp · −
trnS-UGA · PV558881.1 · 34,874–34,966 bp · −
trnM-CAU · PV558881.1 · 35,999–36,072 bp · −
rps14 · PV558881.1 · 36,222–36,524 bp · −
psaB · PV558881.1 · 36,647–38,851 bp · −
psaA · PV558881.1 · 38,877–41,129 bp · −
ycf3 · PV558881.1 · 41,962–43,908 bp · −
rps4 · PV558881.1 · 44,899–45,504 bp · −
trnT-UGU · PV558881.1 · 45,873–45,945 bp · −
ndhJ · PV558881.1 · 48,241–48,717 bp · −
ndhK · PV558881.1 · 48,828–49,505 bp · −
ndhC · PV558881.1 · 49,557–49,919 bp · −
trnV-UAC · PV558881.1 · 50,877–51,524 bp · −
atpE · PV558881.1 · 51,988–52,389 bp · −
atpB · PV558881.1 · 52,386–53,882 bp · −
psbJ · PV558881.1 · 63,463–63,585 bp · −
psbL · PV558881.1 · 63,720–63,836 bp · −
psbF · PV558881.1 · 63,860–63,979 bp · −
psbE · PV558881.1 · 63,994–64,245 bp · −
trnW-CCA · PV558881.1 · 65,652–65,725 bp · −
trnP-UGG · PV558881.1 · 65,899–65,972 bp · −
rpl20 · PV558881.1 · 67,764–68,150 bp · −
rps12 · PV558881.1 · 68,968–69,081 bp · −
rps12 · PV558881.1 · 96,381–97,174 bp · −
clpP · PV558881.1 · 69,205–71,116 bp · −
psbN · PV558881.1 · 73,450–73,581 bp · −
rpoA · PV558881.1 · 76,979–77,986 bp · −
rps11 · PV558881.1 · 78,057–78,473 bp · −
rpl36 · PV558881.1 · 78,583–78,696 bp · −
infA · PV558881.1 · 78,792–79,025 bp · −
rps8 · PV558881.1 · 79,152–79,556 bp · −
rpl14 · PV558881.1 · 79,747–80,115 bp · −
rpl16 · PV558881.1 · 80,243–80,653 bp · −
rps3 · PV558881.1 · 81,675–82,337 bp · −
rpl22 · PV558881.1 · 82,322–82,789 bp · −
rps19 · PV558881.1 · 82,859–83,137 bp · −
rpl2 · PV558881.1 · 83,197–84,686 bp · −
rpl23 · PV558881.1 · 84,705–84,986 bp · −
trnI-CAU · PV558881.1 · 85,152–85,225 bp · −
trnL-CAA · PV558881.1 · 92,745–92,825 bp · −
ndhB · PV558881.1 · 93,386–95,593 bp · −
rps7 · PV558881.1 · 95,860–96,327 bp · −
trnN-GUU · PV558881.1 · 107,262–107,333 bp · −
ndhF · PV558881.1 · 108,687–110,918 bp · −
ndhD · PV558881.1 · 113,747–115,276 bp · −
psaC · PV558881.1 · 115,371–115,616 bp · −
ndhE · PV558881.1 · 115,865–116,170 bp · −
ndhG · PV558881.1 · 116,389–116,919 bp · −
ndhI · PV558881.1 · 117,296–117,808 bp · −
ndhA · PV558881.1 · 117,889–119,986 bp · −
ndhH · PV558881.1 · 119,988–121,169 bp · −
rps15 · PV558881.1 · 121,269–121,541 bp · −
ycf1 · PV558881.1 · 121,992–127,544 bp · −
trnR-ACG · PV558881.1 · 128,470–128,543 bp · −
rrn5S · PV558881.1 · 128,783–128,913 bp · −
rrn4.5S · PV558881.1 · 129,007–129,276 bp · −
rrn23S · PV558881.1 · 129,375–132,185 bp · −
trnA-UGC · PV558881.1 · 132,345–133,223 bp · −
trnI-GAU · PV558881.1 · 133,288–134,306 bp · −
rrn16S · PV558881.1 · 134,605–136,095 bp · −
trnV-GAC · PV558881.1 · 136,322–136,393 bp · −
ycf15 · PV558881.1 · 142,723–142,920 bp · −
ycf2 · PV558881.1 · 143,054–149,893 bp · −
psbK · PV558881.1 · 7,450–7,635 bp · +
psbI · PV558881.1 · 8,027–8,137 bp · +
trnT-CGU · PV558881.1 · 9,108–9,870 bp · +
trnR-UCU · PV558881.1 · 10,057–10,128 bp · +
trnC-GCA · PV558881.1 · 27,736–27,806 bp · +
petN · PV558881.1 · 27,964–28,059 bp · +
trnT-GGU · PV558881.1 · 30,719–30,790 bp · +
psbD · PV558881.1 · 32,197–33,258 bp · +
psbC · PV558881.1 · 33,206–34,627 bp · +
psbZ · PV558881.1 · 35,301–35,489 bp · +
trnG-GCC · PV558881.1 · 35,768–35,838 bp · +
trnS-GGA · PV558881.1 · 44,532–44,618 bp · +
trnL-UAA · PV558881.1 · 46,637–47,205 bp · +
trnF-GAA · PV558881.1 · 47,495–47,567 bp · +
trnM-CAU · PV558881.1 · 51,705–51,777 bp · +
rbcL · PV558881.1 · 54,677–56,110 bp · +
accD · PV558881.1 · 56,815–58,296 bp · +
psaI · PV558881.1 · 58,762–58,872 bp · +
ycf4 · PV558881.1 · 59,323–59,877 bp · +
cemA · PV558881.1 · 60,556–61,245 bp · +
petA · PV558881.1 · 61,459–62,421 bp · +
petL · PV558881.1 · 65,152–65,247 bp · +
petG · PV558881.1 · 65,424–65,537 bp · +
psaJ · PV558881.1 · 66,253–66,387 bp · +
rpl33 · PV558881.1 · 66,843–67,043 bp · +
rps18 · PV558881.1 · 67,225–67,530 bp · +
rps12 · PV558881.1 · 138,033–138,826 bp · +
psbB · PV558881.1 · 71,565–73,091 bp · +
psbT · PV558881.1 · 73,275–73,376 bp · +
psbH · PV558881.1 · 73,687–73,908 bp · +
petB · PV558881.1 · 74,032–75,404 bp · +
petD · PV558881.1 · 75,592–76,793 bp · +
ycf2 · PV558881.1 · 85,314–92,153 bp · +
ycf15 · PV558881.1 · 92,287–92,484 bp · +
trnV-GAC · PV558881.1 · 98,814–98,885 bp · +
rrn16S · PV558881.1 · 99,112–100,602 bp · +
trnI-GAU · PV558881.1 · 100,901–101,919 bp · +
trnA-UGC · PV558881.1 · 101,984–102,862 bp · +
rrn23S · PV558881.1 · 103,022–105,832 bp · +
rrn4.5S · PV558881.1 · 105,931–106,200 bp · +
rrn5S · PV558881.1 · 106,294–106,424 bp · +
trnR-ACG · PV558881.1 · 106,664–106,737 bp · +
ycf1 · PV558881.1 · 107,552–108,793 bp · +
rpl32 · PV558881.1 · 111,393–111,563 bp · +
trnL-UAG · PV558881.1 · 112,342–112,421 bp · +
ccsA · PV558881.1 · 112,521–113,498 bp · +
trnN-GUU · PV558881.1 · 127,874–127,945 bp · +
rps7 · PV558881.1 · 138,880–139,347 bp · +
ndhB · PV558881.1 · 139,614–141,821 bp · +
trnL-CAA · PV558881.1 · 142,382–142,462 bp · +
trnI-CAU · PV558881.1 · 149,982–150,055 bp · +
rpl23 · PV558881.1 · 150,221–150,502 bp · +
rpl2 · PV558881.1 · 150,521–152,010 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Lycopus lucidus
ANNOTATED PLASTOME
PV558881.1
152,112 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38028 76056 114084 152112 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 17 90 74 Locate
psbA gene − 422 1480 1059 Locate
trnK-UUU gene − 1711 4302 2592 Locate
matK gene − 2037 3566 1530 Locate
rps16 gene − 4857 5970 1114 Locate
trnQ-UUG gene − 6983 7054 72 Locate
psbK gene + 7450 7635 186 Locate
psbI gene + 8027 8137 111 Locate
trnS-GCU gene − 8321 8408 88 Locate
trnT-CGU gene + 9108 9870 763 Locate
trnR-UCU gene + 10057 10128 72 Locate
atpA gene − 10236 11759 1524 Locate
atpF gene − 11855 13107 1253 Locate
atpH gene − 13381 13626 246 Locate
atpI gene − 14277 15020 744 Locate
rps2 gene − 15256 15966 711 Locate
rpoC2 gene − 16183 20370 4188 Locate
rpoC1 gene − 20529 23319 2791 Locate
rpoB gene − 23346 26558 3213 Locate
trnC-GCA gene + 27736 27806 71 Locate
petN gene + 27964 28059 96 Locate
psbM gene − 29109 29213 105 Locate
trnD-GUC gene − 29737 29810 74 Locate
trnY-GUA gene − 29921 30004 84 Locate
trnE-UUC gene − 30086 30158 73 Locate
trnT-GGU gene + 30719 30790 72 Locate
psbD gene + 32197 33258 1062 Locate
psbC gene + 33206 34627 1422 Locate
trnS-UGA gene − 34874 34966 93 Locate
psbZ gene + 35301 35489 189 Locate
trnG-GCC gene + 35768 35838 71 Locate
trnM-CAU gene − 35999 36072 74 Locate
rps14 gene − 36222 36524 303 Locate
psaB gene − 36647 38851 2205 Locate
psaA gene − 38877 41129 2253 Locate
ycf3 gene − 41962 43908 1947 Locate
trnS-GGA gene + 44532 44618 87 Locate
rps4 gene − 44899 45504 606 Locate
trnT-UGU gene − 45873 45945 73 Locate
trnL-UAA gene + 46637 47205 569 Locate
trnF-GAA gene + 47495 47567 73 Locate
ndhJ gene − 48241 48717 477 Locate
ndhK gene − 48828 49505 678 Locate
ndhC gene − 49557 49919 363 Locate
trnV-UAC gene − 50877 51524 648 Locate
trnM-CAU gene + 51705 51777 73 Locate
atpE gene − 51988 52389 402 Locate
atpB gene − 52386 53882 1497 Locate
rbcL gene + 54677 56110 1434 Locate
accD gene + 56815 58296 1482 Locate
psaI gene + 58762 58872 111 Locate
ycf4 gene + 59323 59877 555 Locate
cemA gene + 60556 61245 690 Locate
petA gene + 61459 62421 963 Locate
psbJ gene − 63463 63585 123 Locate
psbL gene − 63720 63836 117 Locate
psbF gene − 63860 63979 120 Locate
psbE gene − 63994 64245 252 Locate
petL gene + 65152 65247 96 Locate
petG gene + 65424 65537 114 Locate
trnW-CCA gene − 65652 65725 74 Locate
trnP-UGG gene − 65899 65972 74 Locate
psaJ gene + 66253 66387 135 Locate
rpl33 gene + 66843 67043 201 Locate
rps18 gene + 67225 67530 306 Locate
rpl20 gene − 67764 68150 387 Locate
rps12 gene − 68968 69081 114 Locate
clpP gene − 69205 71116 1912 Locate
psbB gene + 71565 73091 1527 Locate
psbT gene + 73275 73376 102 Locate
psbN gene − 73450 73581 132 Locate
psbH gene + 73687 73908 222 Locate
petB gene + 74032 75404 1373 Locate
petD gene + 75592 76793 1202 Locate
rpoA gene − 76979 77986 1008 Locate
rps11 gene − 78057 78473 417 Locate
rpl36 gene − 78583 78696 114 Locate
infA gene − 78792 79025 234 Locate
rps8 gene − 79152 79556 405 Locate
rpl14 gene − 79747 80115 369 Locate
rpl16 gene − 80243 80653 411 Locate
rps3 gene − 81675 82337 663 Locate
rpl22 gene − 82322 82789 468 Locate
rps19 gene − 82859 83137 279 Locate
rpl2 gene − 83197 84686 1490 Locate
rpl23 gene − 84705 84986 282 Locate
trnI-CAU gene − 85152 85225 74 Locate
ycf2 gene + 85314 92153 6840 Locate
ycf15 gene + 92287 92484 198 Locate
trnL-CAA gene − 92745 92825 81 Locate
ndhB gene − 93386 95593 2208 Locate
rps7 gene − 95860 96327 468 Locate
rps12 gene − 96381 97174 794 Locate
trnV-GAC gene + 98814 98885 72 Locate
rrn16S gene + 99112 100602 1491 Locate
trnI-GAU gene + 100901 101919 1019 Locate
trnA-UGC gene + 101984 102862 879 Locate
rrn23S gene + 103022 105832 2811 Locate
rrn4.5S gene + 105931 106200 270 Locate
rrn5S gene + 106294 106424 131 Locate
trnR-ACG gene + 106664 106737 74 Locate
trnN-GUU gene − 107262 107333 72 Locate
ycf1 gene + 107552 108793 1242 Locate
ndhF gene − 108687 110918 2232 Locate
rpl32 gene + 111393 111563 171 Locate
trnL-UAG gene + 112342 112421 80 Locate
ccsA gene + 112521 113498 978 Locate
ndhD gene − 113747 115276 1530 Locate
psaC gene − 115371 115616 246 Locate
ndhE gene − 115865 116170 306 Locate
ndhG gene − 116389 116919 531 Locate
ndhI gene − 117296 117808 513 Locate
ndhA gene − 117889 119986 2098 Locate
ndhH gene − 119988 121169 1182 Locate
rps15 gene − 121269 121541 273 Locate
ycf1 gene − 121992 127544 5553 Locate
trnN-GUU gene + 127874 127945 72 Locate
trnR-ACG gene − 128470 128543 74 Locate
rrn5S gene − 128783 128913 131 Locate
rrn4.5S gene − 129007 129276 270 Locate
rrn23S gene − 129375 132185 2811 Locate
trnA-UGC gene − 132345 133223 879 Locate
trnI-GAU gene − 133288 134306 1019 Locate
rrn16S gene − 134605 136095 1491 Locate
trnV-GAC gene − 136322 136393 72 Locate
rps12 gene + 138033 138826 794 Locate
rps7 gene + 138880 139347 468 Locate
ndhB gene + 139614 141821 2208 Locate
trnL-CAA gene + 142382 142462 81 Locate
ycf15 gene − 142723 142920 198 Locate
ycf2 gene − 143054 149893 6840 Locate
trnI-CAU gene + 149982 150055 74 Locate
rpl23 gene + 150221 150502 282 Locate
rpl2 gene + 150521 152010 1490 Locate
Status Available
Accession PV558881.1
Length 152,112 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources