Ocimum americanum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_079695.1 · 13–86 bp · −
psbA · NC_079695.1 · 388–1,446 bp · −
matK · NC_079695.1 · 2,003–3,523 bp · −
trnK-UUU · NC_079695.1 · 4,218–4,254 bp · −
rps16 · NC_079695.1 · 4,790–5,923 bp · −
trnQ-UUG · NC_079695.1 · 6,837–6,908 bp · −
trnS-GCU · NC_079695.1 · 8,132–8,219 bp · −
atpA · NC_079695.1 · 10,085–11,608 bp · −
atpF · NC_079695.1 · 11,720–12,959 bp · −
atpH · NC_079695.1 · 13,265–13,510 bp · −
atpI · NC_079695.1 · 14,515–15,258 bp · −
rps2 · NC_079695.1 · 15,484–16,194 bp · −
rpoC2 · NC_079695.1 · 16,412–20,569 bp · −
rpoC1 · NC_079695.1 · 20,746–23,575 bp · −
rpoB · NC_079695.1 · 23,602–26,814 bp · −
psbM · NC_079695.1 · 29,351–29,455 bp · −
trnD-GUC · NC_079695.1 · 29,979–30,052 bp · −
trnY-GUA · NC_079695.1 · 30,169–30,252 bp · −
trnE-UUC · NC_079695.1 · 30,323–30,395 bp · −
trnS-UGA · NC_079695.1 · 35,019–35,111 bp · −
trnM-CAU · NC_079695.1 · 36,110–36,183 bp · −
rps14 · NC_079695.1 · 36,430–36,630 bp · −
psaB · NC_079695.1 · 36,753–38,957 bp · −
psaA · NC_079695.1 · 38,983–41,235 bp · −
pafI · NC_079695.1 · 42,039–44,007 bp · −
rps4 · NC_079695.1 · 45,225–45,830 bp · −
trnT-UGU · NC_079695.1 · 46,224–46,296 bp · −
ndhJ · NC_079695.1 · 48,585–49,061 bp · −
ndhK · NC_079695.1 · 49,175–49,852 bp · −
ndhC · NC_079695.1 · 49,904–50,266 bp · −
trnV-UAC · NC_079695.1 · 51,191–51,843 bp · −
atpE · NC_079695.1 · 52,287–52,688 bp · −
atpB · NC_079695.1 · 52,685–54,181 bp · −
psbJ · NC_079695.1 · 63,967–64,089 bp · −
psbL · NC_079695.1 · 64,224–64,340 bp · −
psbF · NC_079695.1 · 64,364–64,483 bp · −
psbE · NC_079695.1 · 64,498–64,749 bp · −
trnW-CCA · NC_079695.1 · 66,132–66,205 bp · −
trnP-UGG · NC_079695.1 · 66,374–66,447 bp · −
rpl20 · NC_079695.1 · 68,202–68,588 bp · −
rps12 · NC_079695.1 · 69,322–69,435 bp · −
rps12 · NC_079695.1 · 96,730–97,523 bp · −
clpP · NC_079695.1 · 69,576–71,492 bp · −
pbf1 · NC_079695.1 · 73,833–73,964 bp · −
rpoA · NC_079695.1 · 77,364–78,371 bp · −
rps11 · NC_079695.1 · 78,441–78,857 bp · −
rpl36 · NC_079695.1 · 78,967–79,080 bp · −
infA · NC_079695.1 · 79,176–79,409 bp · −
rps8 · NC_079695.1 · 79,539–79,943 bp · −
rpl14 · NC_079695.1 · 80,114–80,482 bp · −
rpl16 · NC_079695.1 · 80,614–81,879 bp · −
rps3 · NC_079695.1 · 82,023–82,685 bp · −
rpl22 · NC_079695.1 · 82,670–83,143 bp · −
rps19 · NC_079695.1 · 83,225–83,374 bp · −
rpl2 · NC_079695.1 · 83,569–85,047 bp · −
rpl23 · NC_079695.1 · 85,066–85,347 bp · −
trnI-CAU · NC_079695.1 · 85,513–85,586 bp · −
trnL-CAA · NC_079695.1 · 93,096–93,176 bp · −
ndhB · NC_079695.1 · 93,748–95,955 bp · −
rps7 · NC_079695.1 · 96,209–96,676 bp · −
trnN-GUU · NC_079695.1 · 107,667–107,738 bp · −
ndhF · NC_079695.1 · 109,104–111,335 bp · −
ndhD · NC_079695.1 · 114,078–115,580 bp · −
psaC · NC_079695.1 · 115,698–115,943 bp · −
ndhE · NC_079695.1 · 116,204–116,509 bp · −
ndhG · NC_079695.1 · 116,718–117,248 bp · −
ndhI · NC_079695.1 · 117,611–118,117 bp · −
ndhA · NC_079695.1 · 118,198–120,295 bp · −
ndhH · NC_079695.1 · 120,297–121,478 bp · −
rps15 · NC_079695.1 · 121,593–121,865 bp · −
ycf1 · NC_079695.1 · 122,308–127,842 bp · −
trnR-ACG · NC_079695.1 · 128,827–128,900 bp · −
rrn5S · NC_079695.1 · 129,144–129,264 bp · −
rrn4.5S · NC_079695.1 · 129,520–129,622 bp · −
rrn23S · NC_079695.1 · 129,721–132,531 bp · −
trnA-UGC · NC_079695.1 · 132,696–133,574 bp · −
trnI-GAU · NC_079695.1 · 134,569–134,656 bp · −
rrn16S · NC_079695.1 · 134,954–136,444 bp · −
trnV-GAC · NC_079695.1 · 136,665–136,736 bp · −
ycf15 · NC_079695.1 · 143,081–143,278 bp · −
ycf2 · NC_079695.1 · 143,420–150,241 bp · −
psbK · NC_079695.1 · 7,289–7,468 bp · +
psbI · NC_079695.1 · 7,859–7,969 bp · +
trnG-UCC · NC_079695.1 · 8,960–9,719 bp · +
trnR-UCU · NC_079695.1 · 9,910–9,981 bp · +
trnC-GCA · NC_079695.1 · 28,042–28,122 bp · +
petN · NC_079695.1 · 28,275–28,364 bp · +
trnT-GGU · NC_079695.1 · 31,016–31,087 bp · +
psbD · NC_079695.1 · 32,350–33,411 bp · +
psbC · NC_079695.1 · 33,359–34,780 bp · +
psbZ · NC_079695.1 · 35,445–35,633 bp · +
trnG-GCC · NC_079695.1 · 35,878–35,948 bp · +
trnS-GGA · NC_079695.1 · 44,844–44,930 bp · +
trnL-UAA · NC_079695.1 · 46,996–47,555 bp · +
trnF-GAA · NC_079695.1 · 47,838–47,910 bp · +
trnM-CAU · NC_079695.1 · 52,024–52,096 bp · +
rbcL · NC_079695.1 · 54,966–56,318 bp · +
accD · NC_079695.1 · 57,092–58,573 bp · +
psaI · NC_079695.1 · 59,300–59,410 bp · +
pafII · NC_079695.1 · 59,858–60,412 bp · +
cemA · NC_079695.1 · 61,061–61,750 bp · +
petA · NC_079695.1 · 61,958–62,920 bp · +
petL · NC_079695.1 · 65,632–65,727 bp · +
petG · NC_079695.1 · 65,896–66,009 bp · +
psaJ · NC_079695.1 · 66,729–66,863 bp · +
rpl33 · NC_079695.1 · 67,307–67,507 bp · +
rps18 · NC_079695.1 · 67,668–67,973 bp · +
rps12 · NC_079695.1 · 138,399–139,192 bp · +
psbB · NC_079695.1 · 71,949–73,475 bp · +
psbT · NC_079695.1 · 73,666–73,767 bp · +
psbH · NC_079695.1 · 74,070–74,288 bp · +
petB · NC_079695.1 · 74,423–75,797 bp · +
petD · NC_079695.1 · 75,986–77,192 bp · +
ycf2 · NC_079695.1 · 85,681–92,502 bp · +
ycf15 · NC_079695.1 · 92,644–92,841 bp · +
trnV-GAC · NC_079695.1 · 99,186–99,257 bp · +
rrn16S · NC_079695.1 · 99,478–100,968 bp · +
trnI-GAU · NC_079695.1 · 101,266–101,353 bp · +
trnA-UGC · NC_079695.1 · 102,348–103,226 bp · +
rrn23S · NC_079695.1 · 103,391–106,201 bp · +
rrn4.5S · NC_079695.1 · 106,300–106,402 bp · +
rrn5S · NC_079695.1 · 106,658–106,778 bp · +
trnR-ACG · NC_079695.1 · 107,022–107,095 bp · +
ycf1 · NC_079695.1 · 108,080–109,210 bp · +
rpl32 · NC_079695.1 · 111,814–111,984 bp · +
trnL-UAG · NC_079695.1 · 112,711–112,790 bp · +
ccsA · NC_079695.1 · 112,880–113,851 bp · +
trnN-GUU · NC_079695.1 · 128,184–128,255 bp · +
rps7 · NC_079695.1 · 139,246–139,713 bp · +
ndhB · NC_079695.1 · 139,967–142,174 bp · +
trnL-CAA · NC_079695.1 · 142,746–142,826 bp · +
trnI-CAU · NC_079695.1 · 150,336–150,409 bp · +
rpl23 · NC_079695.1 · 150,575–150,856 bp · +
rpl2 · NC_079695.1 · 150,875–152,353 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ocimum americanum
ANNOTATED PLASTOME
NC_079695.1
152,460 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38115 76230 114345 152460 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA matK trnK-UUU rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 13 86 74 Locate
psbA gene − 388 1446 1059 Locate
matK gene − 2003 3523 1521 Locate
trnK-UUU gene − 4218 4254 37 Locate
rps16 gene − 4790 5923 1134 Locate
trnQ-UUG gene − 6837 6908 72 Locate
psbK gene + 7289 7468 180 Locate
psbI gene + 7859 7969 111 Locate
trnS-GCU gene − 8132 8219 88 Locate
trnG-UCC gene + 8960 9719 760 Locate
trnR-UCU gene + 9910 9981 72 Locate
atpA gene − 10085 11608 1524 Locate
atpF gene − 11720 12959 1240 Locate
atpH gene − 13265 13510 246 Locate
atpI gene − 14515 15258 744 Locate
rps2 gene − 15484 16194 711 Locate
rpoC2 gene − 16412 20569 4158 Locate
rpoC1 gene − 20746 23575 2830 Locate
rpoB gene − 23602 26814 3213 Locate
trnC-GCA gene + 28042 28122 81 Locate
petN gene + 28275 28364 90 Locate
psbM gene − 29351 29455 105 Locate
trnD-GUC gene − 29979 30052 74 Locate
trnY-GUA gene − 30169 30252 84 Locate
trnE-UUC gene − 30323 30395 73 Locate
trnT-GGU gene + 31016 31087 72 Locate
psbD gene + 32350 33411 1062 Locate
psbC gene + 33359 34780 1422 Locate
trnS-UGA gene − 35019 35111 93 Locate
psbZ gene + 35445 35633 189 Locate
trnG-GCC gene + 35878 35948 71 Locate
trnM-CAU gene − 36110 36183 74 Locate
rps14 gene − 36430 36630 201 Locate
psaB gene − 36753 38957 2205 Locate
psaA gene − 38983 41235 2253 Locate
pafI gene − 42039 44007 1969 Locate
trnS-GGA gene + 44844 44930 87 Locate
rps4 gene − 45225 45830 606 Locate
trnT-UGU gene − 46224 46296 73 Locate
trnL-UAA gene + 46996 47555 560 Locate
trnF-GAA gene + 47838 47910 73 Locate
ndhJ gene − 48585 49061 477 Locate
ndhK gene − 49175 49852 678 Locate
ndhC gene − 49904 50266 363 Locate
trnV-UAC gene − 51191 51843 653 Locate
trnM-CAU gene + 52024 52096 73 Locate
atpE gene − 52287 52688 402 Locate
atpB gene − 52685 54181 1497 Locate
rbcL gene + 54966 56318 1353 Locate
accD gene + 57092 58573 1482 Locate
psaI gene + 59300 59410 111 Locate
pafII gene + 59858 60412 555 Locate
cemA gene + 61061 61750 690 Locate
petA gene + 61958 62920 963 Locate
psbJ gene − 63967 64089 123 Locate
psbL gene − 64224 64340 117 Locate
psbF gene − 64364 64483 120 Locate
psbE gene − 64498 64749 252 Locate
petL gene + 65632 65727 96 Locate
petG gene + 65896 66009 114 Locate
trnW-CCA gene − 66132 66205 74 Locate
trnP-UGG gene − 66374 66447 74 Locate
psaJ gene + 66729 66863 135 Locate
rpl33 gene + 67307 67507 201 Locate
rps18 gene + 67668 67973 306 Locate
rpl20 gene − 68202 68588 387 Locate
rps12 gene − 69322 69435 114 Locate
clpP gene − 69576 71492 1917 Locate
psbB gene + 71949 73475 1527 Locate
psbT gene + 73666 73767 102 Locate
pbf1 gene − 73833 73964 132 Locate
psbH gene + 74070 74288 219 Locate
petB gene + 74423 75797 1375 Locate
petD gene + 75986 77192 1207 Locate
rpoA gene − 77364 78371 1008 Locate
rps11 gene − 78441 78857 417 Locate
rpl36 gene − 78967 79080 114 Locate
infA gene − 79176 79409 234 Locate
rps8 gene − 79539 79943 405 Locate
rpl14 gene − 80114 80482 369 Locate
rpl16 gene − 80614 81879 1266 Locate
rps3 gene − 82023 82685 663 Locate
rpl22 gene − 82670 83143 474 Locate
rps19 gene − 83225 83374 150 Locate
rpl2 gene − 83569 85047 1479 Locate
rpl23 gene − 85066 85347 282 Locate
trnI-CAU gene − 85513 85586 74 Locate
ycf2 gene + 85681 92502 6822 Locate
ycf15 gene + 92644 92841 198 Locate
trnL-CAA gene − 93096 93176 81 Locate
ndhB gene − 93748 95955 2208 Locate
rps7 gene − 96209 96676 468 Locate
rps12 gene − 96730 97523 794 Locate
trnV-GAC gene + 99186 99257 72 Locate
rrn16S gene + 99478 100968 1491 Locate
trnI-GAU gene + 101266 101353 88 Locate
trnA-UGC gene + 102348 103226 879 Locate
rrn23S gene + 103391 106201 2811 Locate
rrn4.5S gene + 106300 106402 103 Locate
rrn5S gene + 106658 106778 121 Locate
trnR-ACG gene + 107022 107095 74 Locate
trnN-GUU gene − 107667 107738 72 Locate
ycf1 gene + 108080 109210 1131 Locate
ndhF gene − 109104 111335 2232 Locate
rpl32 gene + 111814 111984 171 Locate
trnL-UAG gene + 112711 112790 80 Locate
ccsA gene + 112880 113851 972 Locate
ndhD gene − 114078 115580 1503 Locate
psaC gene − 115698 115943 246 Locate
ndhE gene − 116204 116509 306 Locate
ndhG gene − 116718 117248 531 Locate
ndhI gene − 117611 118117 507 Locate
ndhA gene − 118198 120295 2098 Locate
ndhH gene − 120297 121478 1182 Locate
rps15 gene − 121593 121865 273 Locate
ycf1 gene − 122308 127842 5535 Locate
trnN-GUU gene + 128184 128255 72 Locate
trnR-ACG gene − 128827 128900 74 Locate
rrn5S gene − 129144 129264 121 Locate
rrn4.5S gene − 129520 129622 103 Locate
rrn23S gene − 129721 132531 2811 Locate
trnA-UGC gene − 132696 133574 879 Locate
trnI-GAU gene − 134569 134656 88 Locate
rrn16S gene − 134954 136444 1491 Locate
trnV-GAC gene − 136665 136736 72 Locate
rps12 gene + 138399 139192 794 Locate
rps7 gene + 139246 139713 468 Locate
ndhB gene + 139967 142174 2208 Locate
trnL-CAA gene + 142746 142826 81 Locate
ycf15 gene − 143081 143278 198 Locate
ycf2 gene − 143420 150241 6822 Locate
trnI-CAU gene + 150336 150409 74 Locate
rpl23 gene + 150575 150856 282 Locate
rpl2 gene + 150875 152353 1479 Locate
Status Available
Accession NC_079695.1
Length 152,460 bp
GC content 37.8%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources