Resource summary
This dossier brings together taxonomy, phylogeny access, omics modules, functional loci, and analysis tools so users can move smoothly from lineage-level browsing to locus-level inspection.
Species scientific record
Perilla frutescens
紫苏
Perilla / shiso
Aliases: P. frutescens, Perilla / shiso, Perilla frutescens +2
A curated Perilla resource that supports comparative browsing across nuclear, chloroplast, mitochondrial, and transcriptome datasets within the Lamiaceae database.
Evidence coverage
Current public omics layers
2 available · 2 metadata only · 0 unavailable
Record overview
Taxonomy, biological context and the scope of the current release.
Perilla frutescens is presented as an integrated entry point for phylogeny-guided navigation, organelle-genome visualization, nuclear-genome summaries, and functional-gene exploration.
Research relevance
Contains characteristic aromatic metabolites and is often used in studies of medicinal and edible herbs.
- Distribution
- Cultivated widely in East Asia and beyond.
- Research / medicinal context
- Contains characteristic aromatic metabolites and is often used in studies of medicinal and edible herbs.
Omics evidence matrix
Accession-backed, metadata-only and unavailable states remain scientifically distinct.
| Layer | Status | Accession / dataset | Assembly size | GC | Genes / features | Coordinates | |
|---|---|---|---|---|---|---|---|
Nuclear genome |
— | 652.6 Mb | 35.7% | 35558 | — | View layer | |
Chloroplast genome |
Available | OR567250.1 |
152,593 bp | 37.8% | 130 | 130 loci | View layer |
Mitochondrial genome |
Available | C_AA059311.1 |
299551 | 45.2 | 154 | 77 loci | View layer |
Transcriptome |
— | 12 samples | TPM matrix | 26810 | — | View layer |
Genes linked to this species
Gene symbols are included only when DNA sequence or coordinate evidence exists.
| Gene | Full name / pathway | Localization | DNA records | Coordinate loci | |
|---|---|---|---|---|---|
| accD | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atp1 | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atp4 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp6 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp8 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp9 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpB | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atpE | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpF | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpH | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpI | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
Publication-safe DNA records
Public sequence content is DNA-only; no protein FASTA is exposed.
accDaccD
NC_0307551482 bpchloroplast genome
Open FASTA
atp1atp1
C_AA0593111521 bpmitochondrial genome
Open FASTA
atpBatpB
NC_0307551497 bpchloroplast genome
Open FASTA
cobcob
C_AA0593111176 bpmitochondrial genome
Open FASTA
cox1cox1
C_AA0593112545 bpmitochondrial genome
Open FASTA
matKmatK
NC_0307551545 bpchloroplast genome
Open FASTA
matRmatR
C_AA0593111956 bpmitochondrial genome
Open FASTA
nad1nad1
C_AA059311390 bpmitochondrial genome
Open FASTA
Pathway evidence
Family-level summaries and concrete candidate loci are kept separate.
6318 candidate records across 89 modules1133 strong locus records are available for inspection.