Premna puberula chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_061379.1 · 8–81 bp · −
psbA · NC_061379.1 · 402–1,460 bp · −
trnK-UUU · NC_061379.1 · 1,680–4,260 bp · −
matK · NC_061379.1 · 1,976–3,517 bp · −
rps16 · NC_061379.1 · 5,187–6,323 bp · −
trnQ-UUG · NC_061379.1 · 7,542–7,613 bp · −
trnS-GCU · NC_061379.1 · 8,744–8,831 bp · −
atpA · NC_061379.1 · 10,706–12,229 bp · −
atpF · NC_061379.1 · 12,298–13,556 bp · −
atpH · NC_061379.1 · 13,925–14,170 bp · −
atpI · NC_061379.1 · 15,196–15,939 bp · −
rps2 · NC_061379.1 · 16,170–16,880 bp · −
rpoC2 · NC_061379.1 · 17,139–21,290 bp · −
rpoC1 · NC_061379.1 · 21,445–24,289 bp · −
rpoB · NC_061379.1 · 24,316–27,528 bp · −
psbM · NC_061379.1 · 30,647–30,751 bp · −
trnD-GUC · NC_061379.1 · 31,262–31,335 bp · −
trnY-GUA · NC_061379.1 · 31,443–31,526 bp · −
trnE-UUC · NC_061379.1 · 31,586–31,658 bp · −
trnS-UGA · NC_061379.1 · 36,252–36,344 bp · −
trnM-CAU · NC_061379.1 · 37,407–37,480 bp · −
rps14 · NC_061379.1 · 37,625–37,927 bp · −
psaB · NC_061379.1 · 38,050–40,254 bp · −
psaA · NC_061379.1 · 40,280–42,532 bp · −
ycf3 · NC_061379.1 · 43,298–45,231 bp · −
rps4 · NC_061379.1 · 46,459–47,064 bp · −
trnT-UGU · NC_061379.1 · 47,414–47,486 bp · −
ndhJ · NC_061379.1 · 49,756–50,232 bp · −
ndhK · NC_061379.1 · 50,333–51,010 bp · −
ndhC · NC_061379.1 · 51,062–51,424 bp · −
atpE · NC_061379.1 · 53,452–53,853 bp · −
atpB · NC_061379.1 · 53,850–55,346 bp · −
psbJ · NC_061379.1 · 65,053–65,175 bp · −
psbL · NC_061379.1 · 65,309–65,425 bp · −
psbF · NC_061379.1 · 65,449–65,568 bp · −
psbE · NC_061379.1 · 65,583–65,834 bp · −
trnW-CCA · NC_061379.1 · 66,886–66,959 bp · −
trnP-UGG · NC_061379.1 · 67,123–67,196 bp · −
rpl20 · NC_061379.1 · 69,063–69,455 bp · −
rps12 · NC_061379.1 · 70,271–70,384 bp · −
rps12 · NC_061379.1 · 98,354–98,596 bp · −
clpP · NC_061379.1 · 70,515–72,470 bp · −
psbN · NC_061379.1 · 74,790–74,921 bp · −
rpoA · NC_061379.1 · 78,371–79,381 bp · −
rps11 · NC_061379.1 · 79,453–79,869 bp · −
rpl36 · NC_061379.1 · 79,971–80,084 bp · −
infA · NC_061379.1 · 80,186–80,419 bp · −
rps8 · NC_061379.1 · 80,544–80,948 bp · −
rpl14 · NC_061379.1 · 81,152–81,520 bp · −
rpl16 · NC_061379.1 · 81,659–82,962 bp · −
rps3 · NC_061379.1 · 83,113–83,775 bp · −
rpl22 · NC_061379.1 · 83,760–84,224 bp · −
rps19 · NC_061379.1 · 84,284–84,562 bp · −
rpl2 · NC_061379.1 · 84,617–86,108 bp · −
rpl23 · NC_061379.1 · 86,127–86,408 bp · −
trnM-CAU · NC_061379.1 · 86,574–86,647 bp · −
trnL-CAA · NC_061379.1 · 94,169–94,249 bp · −
ndhB · NC_061379.1 · 94,796–97,007 bp · −
rps7 · NC_061379.1 · 97,282–97,749 bp · −
trnN-GUU · NC_061379.1 · 108,706–108,777 bp · −
ndhF · NC_061379.1 · 110,164–112,389 bp · −
ndhD · NC_061379.1 · 114,980–116,479 bp · −
psaC · NC_061379.1 · 116,613–116,858 bp · −
ndhE · NC_061379.1 · 117,114–117,419 bp · −
ndhG · NC_061379.1 · 117,638–118,168 bp · −
ndhI · NC_061379.1 · 118,516–119,022 bp · −
ndhA · NC_061379.1 · 119,104–121,134 bp · −
ndhH · NC_061379.1 · 121,136–122,317 bp · −
rps15 · NC_061379.1 · 122,414–122,686 bp · −
ycf1 · NC_061379.1 · 123,073–127,857 bp · −
trnR-ACG · NC_061379.1 · 129,648–129,721 bp · −
rrn5S · NC_061379.1 · 129,954–130,084 bp · −
rrn23S · NC_061379.1 · 130,547–133,357 bp · −
trnA-UGC · NC_061379.1 · 133,527–134,418 bp · −
trnI · NC_061379.1 · 134,482–135,501 bp · −
rrn16S · NC_061379.1 · 135,800–137,290 bp · −
trnV-GAC · NC_061379.1 · 137,504–137,575 bp · −
ycf15 · NC_061379.1 · 143,874–144,071 bp · −
ycf2 · NC_061379.1 · 144,213–151,046 bp · −
psbK · NC_061379.1 · 7,941–8,132 bp · +
psbI · NC_061379.1 · 8,515–8,625 bp · +
trnT-CGU · NC_061379.1 · 9,574–10,352 bp · +
trnR-UCU · NC_061379.1 · 10,530–10,601 bp · +
trnC-GCA · NC_061379.1 · 28,689–28,759 bp · +
petN · NC_061379.1 · 29,575–29,664 bp · +
trnT-GGU · NC_061379.1 · 32,158–32,229 bp · +
psbD · NC_061379.1 · 33,585–34,646 bp · +
psbC · NC_061379.1 · 34,594–36,015 bp · +
psbZ · NC_061379.1 · 36,686–36,874 bp · +
trnG-GCC · NC_061379.1 · 37,172–37,242 bp · +
trnS-GGA · NC_061379.1 · 46,095–46,181 bp · +
trnL-UAA · NC_061379.1 · 48,171–48,736 bp · +
trnF-GAA · NC_061379.1 · 49,035–49,107 bp · +
trnM-CAU · NC_061379.1 · 53,196–53,268 bp · +
rbcL · NC_061379.1 · 56,159–57,601 bp · +
accD · NC_061379.1 · 58,303–59,784 bp · +
psaI · NC_061379.1 · 60,490–60,600 bp · +
ycf4 · NC_061379.1 · 61,045–61,599 bp · +
cemA · NC_061379.1 · 62,249–62,938 bp · +
petA · NC_061379.1 · 63,150–64,112 bp · +
petL · NC_061379.1 · 66,375–66,470 bp · +
petG · NC_061379.1 · 66,645–66,758 bp · +
psaJ · NC_061379.1 · 67,515–67,649 bp · +
rpl33 · NC_061379.1 · 68,148–68,348 bp · +
rps18 · NC_061379.1 · 68,525–68,830 bp · +
rps12 · NC_061379.1 · 139,186–139,428 bp · +
psbB · NC_061379.1 · 72,916–74,442 bp · +
psbT · NC_061379.1 · 74,622–74,729 bp · +
psbH · NC_061379.1 · 75,027–75,248 bp · +
petB · NC_061379.1 · 75,373–76,748 bp · +
petD · NC_061379.1 · 77,671–78,195 bp · +
ycf2 · NC_061379.1 · 86,736–93,569 bp · +
ycf15 · NC_061379.1 · 93,711–93,908 bp · +
trnV-GAC · NC_061379.1 · 100,207–100,278 bp · +
rrn16S · NC_061379.1 · 100,492–101,982 bp · +
trnI · NC_061379.1 · 102,281–103,300 bp · +
trnA-UGC · NC_061379.1 · 103,364–104,255 bp · +
rrn23S · NC_061379.1 · 104,425–107,235 bp · +
rrn5S · NC_061379.1 · 107,698–107,828 bp · +
trnR-ACG · NC_061379.1 · 108,061–108,134 bp · +
rpl32 · NC_061379.1 · 112,901–113,077 bp · +
trnL-UAG · NC_061379.1 · 113,583–113,662 bp · +
ccsA · NC_061379.1 · 113,742–114,719 bp · +
trnN-GUU · NC_061379.1 · 129,005–129,076 bp · +
rps7 · NC_061379.1 · 140,033–140,500 bp · +
ndhB · NC_061379.1 · 140,775–142,986 bp · +
trnL-CAA · NC_061379.1 · 143,533–143,613 bp · +
trnM-CAU · NC_061379.1 · 151,135–151,208 bp · +
rpl23 · NC_061379.1 · 151,374–151,655 bp · +
rpl2 · NC_061379.1 · 151,674–153,165 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Premna puberula
ANNOTATED PLASTOME
NC_061379.1
153,255 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38314 76628 114941 153255 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 8 81 74 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1680 4260 2581 Locate
matK gene − 1976 3517 1542 Locate
rps16 gene − 5187 6323 1137 Locate
trnQ-UUG gene − 7542 7613 72 Locate
psbK gene + 7941 8132 192 Locate
psbI gene + 8515 8625 111 Locate
trnS-GCU gene − 8744 8831 88 Locate
trnT-CGU gene + 9574 10352 779 Locate
trnR-UCU gene + 10530 10601 72 Locate
atpA gene − 10706 12229 1524 Locate
atpF gene − 12298 13556 1259 Locate
atpH gene − 13925 14170 246 Locate
atpI gene − 15196 15939 744 Locate
rps2 gene − 16170 16880 711 Locate
rpoC2 gene − 17139 21290 4152 Locate
rpoC1 gene − 21445 24289 2845 Locate
rpoB gene − 24316 27528 3213 Locate
trnC-GCA gene + 28689 28759 71 Locate
petN gene + 29575 29664 90 Locate
psbM gene − 30647 30751 105 Locate
trnD-GUC gene − 31262 31335 74 Locate
trnY-GUA gene − 31443 31526 84 Locate
trnE-UUC gene − 31586 31658 73 Locate
trnT-GGU gene + 32158 32229 72 Locate
psbD gene + 33585 34646 1062 Locate
psbC gene + 34594 36015 1422 Locate
trnS-UGA gene − 36252 36344 93 Locate
psbZ gene + 36686 36874 189 Locate
trnG-GCC gene + 37172 37242 71 Locate
trnM-CAU gene − 37407 37480 74 Locate
rps14 gene − 37625 37927 303 Locate
psaB gene − 38050 40254 2205 Locate
psaA gene − 40280 42532 2253 Locate
ycf3 gene − 43298 45231 1934 Locate
trnS-GGA gene + 46095 46181 87 Locate
rps4 gene − 46459 47064 606 Locate
trnT-UGU gene − 47414 47486 73 Locate
trnL-UAA gene + 48171 48736 566 Locate
trnF-GAA gene + 49035 49107 73 Locate
ndhJ gene − 49756 50232 477 Locate
ndhK gene − 50333 51010 678 Locate
ndhC gene − 51062 51424 363 Locate
trnM-CAU gene + 53196 53268 73 Locate
atpE gene − 53452 53853 402 Locate
atpB gene − 53850 55346 1497 Locate
rbcL gene + 56159 57601 1443 Locate
accD gene + 58303 59784 1482 Locate
psaI gene + 60490 60600 111 Locate
ycf4 gene + 61045 61599 555 Locate
cemA gene + 62249 62938 690 Locate
petA gene + 63150 64112 963 Locate
psbJ gene − 65053 65175 123 Locate
psbL gene − 65309 65425 117 Locate
psbF gene − 65449 65568 120 Locate
psbE gene − 65583 65834 252 Locate
petL gene + 66375 66470 96 Locate
petG gene + 66645 66758 114 Locate
trnW-CCA gene − 66886 66959 74 Locate
trnP-UGG gene − 67123 67196 74 Locate
psaJ gene + 67515 67649 135 Locate
rpl33 gene + 68148 68348 201 Locate
rps18 gene + 68525 68830 306 Locate
rpl20 gene − 69063 69455 393 Locate
rps12 gene − 70271 70384 114 Locate
clpP gene − 70515 72470 1956 Locate
psbB gene + 72916 74442 1527 Locate
psbT gene + 74622 74729 108 Locate
psbN gene − 74790 74921 132 Locate
psbH gene + 75027 75248 222 Locate
petB gene + 75373 76748 1376 Locate
petD gene + 77671 78195 525 Locate
rpoA gene − 78371 79381 1011 Locate
rps11 gene − 79453 79869 417 Locate
rpl36 gene − 79971 80084 114 Locate
infA gene − 80186 80419 234 Locate
rps8 gene − 80544 80948 405 Locate
rpl14 gene − 81152 81520 369 Locate
rpl16 gene − 81659 82962 1304 Locate
rps3 gene − 83113 83775 663 Locate
rpl22 gene − 83760 84224 465 Locate
rps19 gene − 84284 84562 279 Locate
rpl2 gene − 84617 86108 1492 Locate
rpl23 gene − 86127 86408 282 Locate
trnM-CAU gene − 86574 86647 74 Locate
ycf2 gene + 86736 93569 6834 Locate
ycf15 gene + 93711 93908 198 Locate
trnL-CAA gene − 94169 94249 81 Locate
ndhB gene − 94796 97007 2212 Locate
rps7 gene − 97282 97749 468 Locate
rps12 gene − 98354 98596 243 Locate
trnV-GAC gene + 100207 100278 72 Locate
rrn16S gene + 100492 101982 1491 Locate
trnI gene + 102281 103300 1020 Locate
trnA-UGC gene + 103364 104255 892 Locate
rrn23S gene + 104425 107235 2811 Locate
rrn5S gene + 107698 107828 131 Locate
trnR-ACG gene + 108061 108134 74 Locate
trnN-GUU gene − 108706 108777 72 Locate
ndhF gene − 110164 112389 2226 Locate
rpl32 gene + 112901 113077 177 Locate
trnL-UAG gene + 113583 113662 80 Locate
ccsA gene + 113742 114719 978 Locate
ndhD gene − 114980 116479 1500 Locate
psaC gene − 116613 116858 246 Locate
ndhE gene − 117114 117419 306 Locate
ndhG gene − 117638 118168 531 Locate
ndhI gene − 118516 119022 507 Locate
ndhA gene − 119104 121134 2031 Locate
ndhH gene − 121136 122317 1182 Locate
rps15 gene − 122414 122686 273 Locate
ycf1 gene − 123073 127857 4785 Locate
trnN-GUU gene + 129005 129076 72 Locate
trnR-ACG gene − 129648 129721 74 Locate
rrn5S gene − 129954 130084 131 Locate
rrn23S gene − 130547 133357 2811 Locate
trnA-UGC gene − 133527 134418 892 Locate
trnI gene − 134482 135501 1020 Locate
rrn16S gene − 135800 137290 1491 Locate
trnV-GAC gene − 137504 137575 72 Locate
rps12 gene + 139186 139428 243 Locate
rps7 gene + 140033 140500 468 Locate
ndhB gene + 140775 142986 2212 Locate
trnL-CAA gene + 143533 143613 81 Locate
ycf15 gene − 143874 144071 198 Locate
ycf2 gene − 144213 151046 6834 Locate
trnM-CAU gene + 151135 151208 74 Locate
rpl23 gene + 151374 151655 282 Locate
rpl2 gene + 151674 153165 1492 Locate
Status Available
Accession NC_061379.1
Length 153,255 bp
GC content 38.0%
Annotated genes 129
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources