Salvia hispanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_046838.1 · 1–72 bp · −
psbA · NC_046838.1 · 389–1,447 bp · −
trnK-UUU · NC_046838.1 · 1,679–4,244 bp · −
matK · NC_046838.1 · 1,983–3,518 bp · −
rps16 · NC_046838.1 · 4,818–5,916 bp · −
trnQ-UUG · NC_046838.1 · 6,675–6,746 bp · −
trnS-GCU · NC_046838.1 · 7,970–8,057 bp · −
atpA · NC_046838.1 · 9,900–11,423 bp · −
atpF · NC_046838.1 · 11,520–12,778 bp · −
atpH · NC_046838.1 · 13,050–13,295 bp · −
atpI · NC_046838.1 · 14,310–15,053 bp · −
rps2 · NC_046838.1 · 15,277–16,113 bp · −
rpoC2 · NC_046838.1 · 16,191–20,378 bp · −
rpoC1 · NC_046838.1 · 20,544–23,355 bp · −
rpoB · NC_046838.1 · 23,382–26,594 bp · −
psbM · NC_046838.1 · 29,045–29,149 bp · −
trnD-GUC · NC_046838.1 · 29,520–29,593 bp · −
trnY-GUA · NC_046838.1 · 29,699–29,782 bp · −
trnE-UUC · NC_046838.1 · 29,853–29,925 bp · −
trnS-UGA · NC_046838.1 · 34,580–34,672 bp · −
trnfM-CAU · NC_046838.1 · 35,693–35,766 bp · −
rps14 · NC_046838.1 · 35,911–36,213 bp · −
psaB · NC_046838.1 · 36,336–38,540 bp · −
psaA · NC_046838.1 · 38,566–40,818 bp · −
ycf3 · NC_046838.1 · 41,542–43,478 bp · −
rps4 · NC_046838.1 · 44,669–45,274 bp · −
trnT-UGU · NC_046838.1 · 45,633–45,705 bp · −
ndhJ · NC_046838.1 · 47,775–48,251 bp · −
ndhK · NC_046838.1 · 48,362–49,039 bp · −
ndhC · NC_046838.1 · 49,091–49,453 bp · −
trnV-UAC · NC_046838.1 · 50,258–50,903 bp · −
atpE · NC_046838.1 · 51,346–51,747 bp · −
atpB · NC_046838.1 · 51,744–53,240 bp · −
psbJ · NC_046838.1 · 62,672–62,794 bp · −
psbL · NC_046838.1 · 62,924–63,145 bp · −
psbF · NC_046838.1 · 63,064–63,183 bp · −
psbE · NC_046838.1 · 63,198–63,449 bp · −
trnW-CCA · NC_046838.1 · 64,858–64,931 bp · −
trnP-UGG · NC_046838.1 · 65,105–65,178 bp · −
rpl20 · NC_046838.1 · 66,943–67,329 bp · −
rps12 · NC_046838.1 · 68,140–68,253 bp · −
rps12 · NC_046838.1 · 95,528–96,321 bp · −
clpP · NC_046838.1 · 68,396–70,307 bp · −
psbN · NC_046838.1 · 72,637–72,768 bp · −
rpoA · NC_046838.1 · 76,141–77,148 bp · −
rps11 · NC_046838.1 · 77,218–77,634 bp · −
rpl36 · NC_046838.1 · 77,746–77,859 bp · −
infA · NC_046838.1 · 77,955–78,188 bp · −
rps8 · NC_046838.1 · 78,310–78,714 bp · −
rpl14 · NC_046838.1 · 78,886–79,254 bp · −
rpl16 · NC_046838.1 · 79,385–80,660 bp · −
rps3 · NC_046838.1 · 80,803–81,465 bp · −
rpl22 · NC_046838.1 · 81,450–81,917 bp · −
rps19 · NC_046838.1 · 81,987–82,265 bp · −
rpl2 · NC_046838.1 · 82,327–83,818 bp · −
rpl23 · NC_046838.1 · 83,837–84,118 bp · −
trnI-CAU · NC_046838.1 · 84,284–84,357 bp · −
trnL-CAA · NC_046838.1 · 91,885–91,965 bp · −
ndhB · NC_046838.1 · 92,525–94,678 bp · −
rps7 · NC_046838.1 · 95,007–95,474 bp · −
trnN-GUU · NC_046838.1 · 106,409–106,480 bp · −
ndhF · NC_046838.1 · 107,828–110,059 bp · −
ndhD · NC_046838.1 · 112,728–114,242 bp · −
psaC · NC_046838.1 · 114,365–114,610 bp · −
ndhE · NC_046838.1 · 114,861–115,163 bp · −
ndhG · NC_046838.1 · 115,379–115,909 bp · −
ndhI · NC_046838.1 · 116,268–116,774 bp · −
ndhA · NC_046838.1 · 116,855–118,957 bp · −
ndhH · NC_046838.1 · 118,959–120,140 bp · −
rps15 · NC_046838.1 · 120,240–120,512 bp · −
ycf1 · NC_046838.1 · 120,919–126,555 bp · −
trnR-ACG · NC_046838.1 · 127,348–127,421 bp · −
rrn5 · NC_046838.1 · 127,665–127,785 bp · −
rrn4.5 · NC_046838.1 · 128,041–128,143 bp · −
rrn23 · NC_046838.1 · 128,244–131,052 bp · −
trnA-UGC · NC_046838.1 · 131,218–132,094 bp · −
trnI-GAU · NC_046838.1 · 132,159–133,177 bp · −
rrn16 · NC_046838.1 · 133,476–134,966 bp · −
trnV-GAC · NC_046838.1 · 135,193–135,264 bp · −
ycf2 · NC_046838.1 · 141,969–148,808 bp · −
psbK · NC_046838.1 · 7,132–7,317 bp · +
psbI · NC_046838.1 · 7,710–7,820 bp · +
trnG-UCC · NC_046838.1 · 8,778–9,538 bp · +
trnR-UCU · NC_046838.1 · 9,714–9,785 bp · +
trnC-GCA · NC_046838.1 · 27,756–27,826 bp · +
petN · NC_046838.1 · 27,982–28,071 bp · +
trnT-GGU · NC_046838.1 · 30,467–30,538 bp · +
psbD · NC_046838.1 · 31,911–32,972 bp · +
psbC · NC_046838.1 · 32,920–34,341 bp · +
psbZ · NC_046838.1 · 35,000–35,188 bp · +
trnG-GCC · NC_046838.1 · 35,466–35,536 bp · +
trnS-GGA · NC_046838.1 · 44,305–44,391 bp · +
trnL-UAA · NC_046838.1 · 46,364–46,938 bp · +
trnF-GAA · NC_046838.1 · 47,226–47,298 bp · +
trnM-CAU · NC_046838.1 · 51,084–51,156 bp · +
rbcL · NC_046838.1 · 54,008–55,462 bp · +
accD · NC_046838.1 · 56,135–57,592 bp · +
psaI · NC_046838.1 · 58,061–58,171 bp · +
ycf4 · NC_046838.1 · 58,616–59,170 bp · +
cemA · NC_046838.1 · 59,813–60,502 bp · +
petA · NC_046838.1 · 60,724–61,686 bp · +
petL · NC_046838.1 · 64,357–64,452 bp · +
petG · NC_046838.1 · 64,630–64,743 bp · +
psaJ · NC_046838.1 · 65,455–65,589 bp · +
rpl33 · NC_046838.1 · 66,028–66,228 bp · +
rps18 · NC_046838.1 · 66,401–66,706 bp · +
rps12 · NC_046838.1 · 136,933–137,726 bp · +
psbB · NC_046838.1 · 70,752–72,278 bp · +
psbT · NC_046838.1 · 72,470–72,571 bp · +
psbH · NC_046838.1 · 72,874–73,095 bp · +
petB · NC_046838.1 · 73,229–74,594 bp · +
petD · NC_046838.1 · 74,782–75,965 bp · +
ycf2 · NC_046838.1 · 84,446–91,285 bp · +
trnV-GAC · NC_046838.1 · 97,990–98,061 bp · +
rrn16 · NC_046838.1 · 98,288–99,778 bp · +
trnI-GAU · NC_046838.1 · 100,077–101,095 bp · +
trnA-UGC · NC_046838.1 · 101,160–102,036 bp · +
rrn23 · NC_046838.1 · 102,202–105,010 bp · +
rrn4.5 · NC_046838.1 · 105,111–105,213 bp · +
rrn5 · NC_046838.1 · 105,469–105,589 bp · +
trnR-ACG · NC_046838.1 · 105,833–105,906 bp · +
rpl32 · NC_046838.1 · 110,513–110,683 bp · +
trnL-UAG · NC_046838.1 · 111,331–111,410 bp · +
ccsA · NC_046838.1 · 111,520–112,497 bp · +
trnN-GUU · NC_046838.1 · 126,774–126,845 bp · +
rps7 · NC_046838.1 · 137,780–138,247 bp · +
ndhB · NC_046838.1 · 138,576–140,729 bp · +
trnL-CAA · NC_046838.1 · 141,289–141,369 bp · +
trnI-CAU · NC_046838.1 · 148,897–148,970 bp · +
rpl23 · NC_046838.1 · 149,136–149,417 bp · +
rpl2 · NC_046838.1 · 149,436–150,927 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia hispanica
ANNOTATED PLASTOME
NC_046838.1
150,980 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37745 75490 113235 150980 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 72 72 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4244 2566 Locate
matK gene − 1983 3518 1536 Locate
rps16 gene − 4818 5916 1099 Locate
trnQ-UUG gene − 6675 6746 72 Locate
psbK gene + 7132 7317 186 Locate
psbI gene + 7710 7820 111 Locate
trnS-GCU gene − 7970 8057 88 Locate
trnG-UCC gene + 8778 9538 761 Locate
trnR-UCU gene + 9714 9785 72 Locate
atpA gene − 9900 11423 1524 Locate
atpF gene − 11520 12778 1259 Locate
atpH gene − 13050 13295 246 Locate
atpI gene − 14310 15053 744 Locate
rps2 gene − 15277 16113 837 Locate
rpoC2 gene − 16191 20378 4188 Locate
rpoC1 gene − 20544 23355 2812 Locate
rpoB gene − 23382 26594 3213 Locate
trnC-GCA gene + 27756 27826 71 Locate
petN gene + 27982 28071 90 Locate
psbM gene − 29045 29149 105 Locate
trnD-GUC gene − 29520 29593 74 Locate
trnY-GUA gene − 29699 29782 84 Locate
trnE-UUC gene − 29853 29925 73 Locate
trnT-GGU gene + 30467 30538 72 Locate
psbD gene + 31911 32972 1062 Locate
psbC gene + 32920 34341 1422 Locate
trnS-UGA gene − 34580 34672 93 Locate
psbZ gene + 35000 35188 189 Locate
trnG-GCC gene + 35466 35536 71 Locate
trnfM-CAU gene − 35693 35766 74 Locate
rps14 gene − 35911 36213 303 Locate
psaB gene − 36336 38540 2205 Locate
psaA gene − 38566 40818 2253 Locate
ycf3 gene − 41542 43478 1937 Locate
trnS-GGA gene + 44305 44391 87 Locate
rps4 gene − 44669 45274 606 Locate
trnT-UGU gene − 45633 45705 73 Locate
trnL-UAA gene + 46364 46938 575 Locate
trnF-GAA gene + 47226 47298 73 Locate
ndhJ gene − 47775 48251 477 Locate
ndhK gene − 48362 49039 678 Locate
ndhC gene − 49091 49453 363 Locate
trnV-UAC gene − 50258 50903 646 Locate
trnM-CAU gene + 51084 51156 73 Locate
atpE gene − 51346 51747 402 Locate
atpB gene − 51744 53240 1497 Locate
rbcL gene + 54008 55462 1455 Locate
accD gene + 56135 57592 1458 Locate
psaI gene + 58061 58171 111 Locate
ycf4 gene + 58616 59170 555 Locate
cemA gene + 59813 60502 690 Locate
petA gene + 60724 61686 963 Locate
psbJ gene − 62672 62794 123 Locate
psbL gene − 62924 63145 222 Locate
psbF gene − 63064 63183 120 Locate
psbE gene − 63198 63449 252 Locate
petL gene + 64357 64452 96 Locate
petG gene + 64630 64743 114 Locate
trnW-CCA gene − 64858 64931 74 Locate
trnP-UGG gene − 65105 65178 74 Locate
psaJ gene + 65455 65589 135 Locate
rpl33 gene + 66028 66228 201 Locate
rps18 gene + 66401 66706 306 Locate
rpl20 gene − 66943 67329 387 Locate
rps12 gene − 68140 68253 114 Locate
clpP gene − 68396 70307 1912 Locate
psbB gene + 70752 72278 1527 Locate
psbT gene + 72470 72571 102 Locate
psbN gene − 72637 72768 132 Locate
psbH gene + 72874 73095 222 Locate
petB gene + 73229 74594 1366 Locate
petD gene + 74782 75965 1184 Locate
rpoA gene − 76141 77148 1008 Locate
rps11 gene − 77218 77634 417 Locate
rpl36 gene − 77746 77859 114 Locate
infA gene − 77955 78188 234 Locate
rps8 gene − 78310 78714 405 Locate
rpl14 gene − 78886 79254 369 Locate
rpl16 gene − 79385 80660 1276 Locate
rps3 gene − 80803 81465 663 Locate
rpl22 gene − 81450 81917 468 Locate
rps19 gene − 81987 82265 279 Locate
rpl2 gene − 82327 83818 1492 Locate
rpl23 gene − 83837 84118 282 Locate
trnI-CAU gene − 84284 84357 74 Locate
ycf2 gene + 84446 91285 6840 Locate
trnL-CAA gene − 91885 91965 81 Locate
ndhB gene − 92525 94678 2154 Locate
rps7 gene − 95007 95474 468 Locate
rps12 gene − 95528 96321 794 Locate
trnV-GAC gene + 97990 98061 72 Locate
rrn16 gene + 98288 99778 1491 Locate
trnI-GAU gene + 100077 101095 1019 Locate
trnA-UGC gene + 101160 102036 877 Locate
rrn23 gene + 102202 105010 2809 Locate
rrn4.5 gene + 105111 105213 103 Locate
rrn5 gene + 105469 105589 121 Locate
trnR-ACG gene + 105833 105906 74 Locate
trnN-GUU gene − 106409 106480 72 Locate
ndhF gene − 107828 110059 2232 Locate
rpl32 gene + 110513 110683 171 Locate
trnL-UAG gene + 111331 111410 80 Locate
ccsA gene + 111520 112497 978 Locate
ndhD gene − 112728 114242 1515 Locate
psaC gene − 114365 114610 246 Locate
ndhE gene − 114861 115163 303 Locate
ndhG gene − 115379 115909 531 Locate
ndhI gene − 116268 116774 507 Locate
ndhA gene − 116855 118957 2103 Locate
ndhH gene − 118959 120140 1182 Locate
rps15 gene − 120240 120512 273 Locate
ycf1 gene − 120919 126555 5637 Locate
trnN-GUU gene + 126774 126845 72 Locate
trnR-ACG gene − 127348 127421 74 Locate
rrn5 gene − 127665 127785 121 Locate
rrn4.5 gene − 128041 128143 103 Locate
rrn23 gene − 128244 131052 2809 Locate
trnA-UGC gene − 131218 132094 877 Locate
trnI-GAU gene − 132159 133177 1019 Locate
rrn16 gene − 133476 134966 1491 Locate
trnV-GAC gene − 135193 135264 72 Locate
rps12 gene + 136933 137726 794 Locate
rps7 gene + 137780 138247 468 Locate
ndhB gene + 138576 140729 2154 Locate
trnL-CAA gene + 141289 141369 81 Locate
ycf2 gene − 141969 148808 6840 Locate
trnI-CAU gene + 148897 148970 74 Locate
rpl23 gene + 149136 149417 282 Locate
rpl2 gene + 149436 150927 1492 Locate
Status Available
Accession NC_046838.1
Length 150,980 bp
GC content 38.0%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources