terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 76.505
- Candidate records
- 436
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Salvia hispanica
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 8
- Source assignments
- 7,908
- Public candidate records
- 2,354
- Observed modules
- 97
- High-confidence records
- 1,137
- Expression matrix
- Unavailable
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 27.867
- Candidate records
- 584
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 10.945
- Candidate records
- 0
- Stable modules
- 0
- Reference-only
- 7
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 12.837
- Candidate records
- 440
- Stable modules
- 13
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 31.372
- Candidate records
- 598
- Stable modules
- 27
- Reference-only
- 0
- Rate / 1k
- 10.515
- Candidate records
- 296
- Stable modules
- 16
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
436 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
584 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 96 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 77 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 70 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 201 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 165 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 84 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 176 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 139 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 154 | 50 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 48 | 48 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 42 | 42 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 33 | 33 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 11 | 11 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
0 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Reference-only | 96 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 46 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 65 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 89 | 0 | family count | — |
PALPhenylalanine ammonia-lyase family | Reference-only | 7 | 0 | gene tree | — |
RASRosmarinic-acid synthase family | Reference-only | 15 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 191 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
440 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 96 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 80 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 86 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 80 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 65 | 50 | plantsme | |
CHIChalcone isomerase family | Stable locus | 46 | 46 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 40 | 40 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 27 | 27 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 24 | 24 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 20 | 20 | plantsme | |
CHSChalcone synthase family | Stable locus | 12 | 12 | plantsme | |
ANRANR enzyme-family module | Stable locus | 11 | 11 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 10 | 10 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
598 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
296 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.