What is included in the current release
This record currently exposes Plastome, Genome, Mitogenome resources and remains cross-linked with phylogeny, species search, and analysis pages.
Species scientific record
Salvia hispanica
Aliases: Salvia hispanica, Salvia hispanica.gene tpm log1p
Salvia hispanica is curated as a Nepetoideae species entry in LamiOmicsDB. The current release links Plastome, Genome, Mitogenome resources with tree-guided navigation, species-level browsing, and analysis tools.
Evidence coverage
Current public omics layers
3 available · 1 metadata only · 0 unavailable
Record overview
Taxonomy, biological context and the scope of the current release.
Use this page as the central entry for phylogeny, omics availability, locus browsing, and tool-assisted exploration.
Recommended use
A practical workflow is to locate the species through the phylogeny or catalogue first, then continue to omics, gene, or tool pages for deeper inspection.
- Distribution
- Distribution notes have not yet been manually curated for this species and will be expanded in later releases.
- Research / medicinal context
- Species-specific medicinal annotations are not yet fully curated; the page currently emphasizes data availability and comparative access.
Omics evidence matrix
Accession-backed, metadata-only and unavailable states remain scientifically distinct.
| Layer | Status | Accession / dataset | Assembly size | GC | Genes / features | Coordinates | |
|---|---|---|---|---|---|---|---|
Nuclear genome |
— | — | — | — | — | View layer | |
Chloroplast genome |
Available | NC_046838.1 |
150,980 bp | 38.0% | 130 | 130 loci | View layer |
Mitochondrial genome |
Available | CM056166.1 |
313444 | 44.85 | 154 | 77 loci | View layer |
Transcriptome |
Available | Salvia_hispanica.gene_tpm_log1p |
12 samples | — | 36993 | — | View layer |
Genes linked to this species
Gene symbols are included only when DNA sequence or coordinate evidence exists.
| Gene | Full name / pathway | Localization | DNA records | Coordinate loci | |
|---|---|---|---|---|---|
| accD | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atp1 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp4 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp6 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp8 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atp9 | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpA | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpB | Functional annotation not curatedNo pathway assignment |
— | 1 | 1 | Gene record |
| atpE | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpF | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpH | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
| atpI | Functional annotation not curatedNo pathway assignment |
— | 0 | 1 | Gene record |
Publication-safe DNA records
Public sequence content is DNA-only; no protein FASTA is exposed.
accDaccD
NC_0468381458 bpchloroplast genome
Open FASTA
atpBatpB
NC_0468381497 bpchloroplast genome
Open FASTA
matKmatK
NC_0468381536 bpchloroplast genome
Open FASTA
ndhFndhF
NC_0468382232 bpchloroplast genome
Open FASTA
psbApsbA
NC_0468381059 bpchloroplast genome
Open FASTA
rbcLrbcL
NC_0468381455 bpchloroplast genome
Open FASTA
rps12rps12
NC_046838908 bpchloroplast genome
Open FASTA
ycf1ycf1
NC_0468385637 bpchloroplast genome
Open FASTA
Pathway evidence
Family-level summaries and concrete candidate loci are kept separate.
7908 candidate records across 97 modules1137 strong locus records are available for inspection.