Salvia miltiorrhiza chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · OR652279.1 · 11–84 bp · −
psbA · OR652279.1 · 392–1,450 bp · −
trnK-UUU · OR652279.1 · 1,673–4,267 bp · −
matK · OR652279.1 · 1,972–3,534 bp · −
rps16 · OR652279.1 · 4,836–5,946 bp · −
trnQ-UUG · OR652279.1 · 6,916–6,987 bp · −
trnS-GCU · OR652279.1 · 8,231–8,318 bp · −
atpA · OR652279.1 · 10,129–11,652 bp · −
atpF · OR652279.1 · 11,749–12,996 bp · −
atpH · OR652279.1 · 13,269–13,514 bp · −
atpI · OR652279.1 · 14,485–15,228 bp · −
rps2 · OR652279.1 · 15,455–16,165 bp · −
rpoC2 · OR652279.1 · 16,374–20,561 bp · −
rpoC1 · OR652279.1 · 20,719–23,532 bp · −
rpoB · OR652279.1 · 23,559–26,771 bp · −
psbM · OR652279.1 · 29,215–29,319 bp · −
trnD-GUC · OR652279.1 · 29,840–29,913 bp · −
trnY-GUA · OR652279.1 · 30,024–30,107 bp · −
trnE-UUC · OR652279.1 · 30,179–30,251 bp · −
trnS-UGA · OR652279.1 · 34,917–35,009 bp · −
trnfM-CAU · OR652279.1 · 36,054–36,127 bp · −
rps14 · OR652279.1 · 36,272–36,574 bp · −
psaB · OR652279.1 · 36,697–38,901 bp · −
psaA · OR652279.1 · 38,927–41,179 bp · −
ycf3 · OR652279.1 · 41,970–43,901 bp · −
rps4 · OR652279.1 · 45,081–45,686 bp · −
trnT-UGU · OR652279.1 · 46,058–46,130 bp · −
ndhJ · OR652279.1 · 48,250–48,726 bp · −
ndhK · OR652279.1 · 48,837–49,514 bp · −
ndhC · OR652279.1 · 49,566–49,928 bp · −
trnV-UAC · OR652279.1 · 50,878–51,526 bp · −
atpE · OR652279.1 · 51,983–52,384 bp · −
atpB · OR652279.1 · 52,381–53,877 bp · −
psbJ · OR652279.1 · 63,323–63,445 bp · −
psbL · OR652279.1 · 63,575–63,691 bp · −
psbF · OR652279.1 · 63,715–63,834 bp · −
psbE · OR652279.1 · 63,849–64,100 bp · −
trnW-CCA · OR652279.1 · 65,409–65,482 bp · −
trnP-UGG · OR652279.1 · 65,653–65,726 bp · −
rpl20 · OR652279.1 · 67,501–67,887 bp · −
rps12 · OR652279.1 · 68,699–68,812 bp · −
rps12 · OR652279.1 · 96,069–96,852 bp · −
clpP · OR652279.1 · 68,936–70,847 bp · −
psbN · OR652279.1 · 73,170–73,301 bp · −
rpoA · OR652279.1 · 76,677–77,684 bp · −
rps11 · OR652279.1 · 77,756–78,172 bp · −
rpl36 · OR652279.1 · 78,282–78,395 bp · −
infA · OR652279.1 · 78,491–78,724 bp · −
rps8 · OR652279.1 · 78,851–79,255 bp · −
rpl14 · OR652279.1 · 79,445–79,813 bp · −
rpl16 · OR652279.1 · 79,945–81,225 bp · −
rps3 · OR652279.1 · 81,361–82,023 bp · −
rpl22 · OR652279.1 · 82,008–82,475 bp · −
rps19 · OR652279.1 · 82,545–82,823 bp · −
rpl2 · OR652279.1 · 82,883–84,365 bp · −
rpl23 · OR652279.1 · 84,384–84,665 bp · −
trnI-CAU · OR652279.1 · 84,831–84,904 bp · −
trnL-CAA · OR652279.1 · 92,426–92,506 bp · −
ndhB · OR652279.1 · 93,066–95,219 bp · −
rps7 · OR652279.1 · 95,548–96,015 bp · −
trnN-GUU · OR652279.1 · 106,845–106,916 bp · −
ndhF · OR652279.1 · 108,270–110,486 bp · −
ndhD · OR652279.1 · 113,194–114,735 bp · −
psaC · OR652279.1 · 114,845–115,090 bp · −
ndhE · OR652279.1 · 115,341–115,646 bp · −
ndhG · OR652279.1 · 115,862–116,392 bp · −
ndhI · OR652279.1 · 116,769–117,275 bp · −
ndhA · OR652279.1 · 117,356–119,432 bp · −
ndhH · OR652279.1 · 119,434–120,615 bp · −
rps15 · OR652279.1 · 120,715–120,987 bp · −
ycf1 · OR652279.1 · 121,413–126,929 bp · −
trnR-ACG · OR652279.1 · 127,850–127,923 bp · −
rrn5S · OR652279.1 · 128,167–128,287 bp · −
rrn4.5S · OR652279.1 · 128,512–128,614 bp · −
rrn23S · OR652279.1 · 128,713–131,523 bp · −
trnA-UGC · OR652279.1 · 131,689–132,556 bp · −
trnI-GAU · OR652279.1 · 132,621–133,632 bp · −
rrn16S · OR652279.1 · 133,931–135,421 bp · −
trnV-GAC · OR652279.1 · 135,648–135,719 bp · −
ycf15 · OR652279.1 · 142,010–142,207 bp · −
ycf2 · OR652279.1 · 142,349–149,182 bp · −
psbK · OR652279.1 · 7,380–7,559 bp · +
psbI · OR652279.1 · 7,956–8,066 bp · +
trnG-UCC · OR652279.1 · 9,009–9,761 bp · +
trnR-UCU · OR652279.1 · 9,946–10,017 bp · +
trnC-GCA · OR652279.1 · 27,916–27,986 bp · +
petN · OR652279.1 · 28,149–28,238 bp · +
trnT-GGU · OR652279.1 · 30,790–30,861 bp · +
psbD · OR652279.1 · 32,241–33,302 bp · +
psbC · OR652279.1 · 33,250–34,671 bp · +
psbZ · OR652279.1 · 35,344–35,532 bp · +
trnG-GCC · OR652279.1 · 35,804–35,874 bp · +
trnS-GGA · OR652279.1 · 44,718–44,804 bp · +
trnL-UAA · OR652279.1 · 46,806–47,346 bp · +
trnF-GAA · OR652279.1 · 47,645–47,717 bp · +
trnM-CAU · OR652279.1 · 51,715–51,787 bp · +
rbcL · OR652279.1 · 54,662–56,095 bp · +
accD · OR652279.1 · 56,786–58,273 bp · +
psaI · OR652279.1 · 58,736–58,846 bp · +
ycf4 · OR652279.1 · 59,301–59,855 bp · +
cemA · OR652279.1 · 60,403–61,092 bp · +
petA · OR652279.1 · 61,298–62,260 bp · +
petL · OR652279.1 · 64,907–65,002 bp · +
petG · OR652279.1 · 65,181–65,294 bp · +
psaJ · OR652279.1 · 66,017–66,151 bp · +
rpl33 · OR652279.1 · 66,603–66,803 bp · +
rps18 · OR652279.1 · 66,964–67,269 bp · +
rps12 · OR652279.1 · 137,323–138,106 bp · +
psbB · OR652279.1 · 71,296–72,822 bp · +
psbT · OR652279.1 · 73,002–73,109 bp · +
psbH · OR652279.1 · 73,407–73,628 bp · +
petB · OR652279.1 · 73,754–75,104 bp · +
petD · OR652279.1 · 75,298–76,500 bp · +
ycf2 · OR652279.1 · 84,993–91,826 bp · +
ycf15 · OR652279.1 · 91,968–92,165 bp · +
trnV-GAC · OR652279.1 · 98,456–98,527 bp · +
rrn16S · OR652279.1 · 98,754–100,244 bp · +
trnI-GAU · OR652279.1 · 100,543–101,554 bp · +
trnA-UGC · OR652279.1 · 101,619–102,486 bp · +
rrn23S · OR652279.1 · 102,652–105,462 bp · +
rrn4.5S · OR652279.1 · 105,561–105,663 bp · +
rrn5S · OR652279.1 · 105,888–106,008 bp · +
trnR-ACG · OR652279.1 · 106,252–106,325 bp · +
rpl32 · OR652279.1 · 110,938–111,108 bp · +
trnL-UAG · OR652279.1 · 111,813–111,892 bp · +
ccsA · OR652279.1 · 111,985–112,962 bp · +
trnN-GUU · OR652279.1 · 127,259–127,330 bp · +
rps7 · OR652279.1 · 138,160–138,627 bp · +
ndhB · OR652279.1 · 138,956–141,109 bp · +
trnL-CAA · OR652279.1 · 141,669–141,749 bp · +
trnI-CAU · OR652279.1 · 149,271–149,344 bp · +
rpl23 · OR652279.1 · 149,510–149,791 bp · +
rpl2 · OR652279.1 · 149,810–151,292 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia miltiorrhiza
ANNOTATED PLASTOME
OR652279.1
151,394 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37848 75697 113546 151394 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1673 4267 2595 Locate
matK gene − 1972 3534 1563 Locate
rps16 gene − 4836 5946 1111 Locate
trnQ-UUG gene − 6916 6987 72 Locate
psbK gene + 7380 7559 180 Locate
psbI gene + 7956 8066 111 Locate
trnS-GCU gene − 8231 8318 88 Locate
trnG-UCC gene + 9009 9761 753 Locate
trnR-UCU gene + 9946 10017 72 Locate
atpA gene − 10129 11652 1524 Locate
atpF gene − 11749 12996 1248 Locate
atpH gene − 13269 13514 246 Locate
atpI gene − 14485 15228 744 Locate
rps2 gene − 15455 16165 711 Locate
rpoC2 gene − 16374 20561 4188 Locate
rpoC1 gene − 20719 23532 2814 Locate
rpoB gene − 23559 26771 3213 Locate
trnC-GCA gene + 27916 27986 71 Locate
petN gene + 28149 28238 90 Locate
psbM gene − 29215 29319 105 Locate
trnD-GUC gene − 29840 29913 74 Locate
trnY-GUA gene − 30024 30107 84 Locate
trnE-UUC gene − 30179 30251 73 Locate
trnT-GGU gene + 30790 30861 72 Locate
psbD gene + 32241 33302 1062 Locate
psbC gene + 33250 34671 1422 Locate
trnS-UGA gene − 34917 35009 93 Locate
psbZ gene + 35344 35532 189 Locate
trnG-GCC gene + 35804 35874 71 Locate
trnfM-CAU gene − 36054 36127 74 Locate
rps14 gene − 36272 36574 303 Locate
psaB gene − 36697 38901 2205 Locate
psaA gene − 38927 41179 2253 Locate
ycf3 gene − 41970 43901 1932 Locate
trnS-GGA gene + 44718 44804 87 Locate
rps4 gene − 45081 45686 606 Locate
trnT-UGU gene − 46058 46130 73 Locate
trnL-UAA gene + 46806 47346 541 Locate
trnF-GAA gene + 47645 47717 73 Locate
ndhJ gene − 48250 48726 477 Locate
ndhK gene − 48837 49514 678 Locate
ndhC gene − 49566 49928 363 Locate
trnV-UAC gene − 50878 51526 649 Locate
trnM-CAU gene + 51715 51787 73 Locate
atpE gene − 51983 52384 402 Locate
atpB gene − 52381 53877 1497 Locate
rbcL gene + 54662 56095 1434 Locate
accD gene + 56786 58273 1488 Locate
psaI gene + 58736 58846 111 Locate
ycf4 gene + 59301 59855 555 Locate
cemA gene + 60403 61092 690 Locate
petA gene + 61298 62260 963 Locate
psbJ gene − 63323 63445 123 Locate
psbL gene − 63575 63691 117 Locate
psbF gene − 63715 63834 120 Locate
psbE gene − 63849 64100 252 Locate
petL gene + 64907 65002 96 Locate
petG gene + 65181 65294 114 Locate
trnW-CCA gene − 65409 65482 74 Locate
trnP-UGG gene − 65653 65726 74 Locate
psaJ gene + 66017 66151 135 Locate
rpl33 gene + 66603 66803 201 Locate
rps18 gene + 66964 67269 306 Locate
rpl20 gene − 67501 67887 387 Locate
rps12 gene − 68699 68812 114 Locate
clpP gene − 68936 70847 1912 Locate
psbB gene + 71296 72822 1527 Locate
psbT gene + 73002 73109 108 Locate
psbN gene − 73170 73301 132 Locate
psbH gene + 73407 73628 222 Locate
petB gene + 73754 75104 1351 Locate
petD gene + 75298 76500 1203 Locate
rpoA gene − 76677 77684 1008 Locate
rps11 gene − 77756 78172 417 Locate
rpl36 gene − 78282 78395 114 Locate
infA gene − 78491 78724 234 Locate
rps8 gene − 78851 79255 405 Locate
rpl14 gene − 79445 79813 369 Locate
rpl16 gene − 79945 81225 1281 Locate
rps3 gene − 81361 82023 663 Locate
rpl22 gene − 82008 82475 468 Locate
rps19 gene − 82545 82823 279 Locate
rpl2 gene − 82883 84365 1483 Locate
rpl23 gene − 84384 84665 282 Locate
trnI-CAU gene − 84831 84904 74 Locate
ycf2 gene + 84993 91826 6834 Locate
ycf15 gene + 91968 92165 198 Locate
trnL-CAA gene − 92426 92506 81 Locate
ndhB gene − 93066 95219 2154 Locate
rps7 gene − 95548 96015 468 Locate
rps12 gene − 96069 96852 784 Locate
trnV-GAC gene + 98456 98527 72 Locate
rrn16S gene + 98754 100244 1491 Locate
trnI-GAU gene + 100543 101554 1012 Locate
trnA-UGC gene + 101619 102486 868 Locate
rrn23S gene + 102652 105462 2811 Locate
rrn4.5S gene + 105561 105663 103 Locate
rrn5S gene + 105888 106008 121 Locate
trnR-ACG gene + 106252 106325 74 Locate
trnN-GUU gene − 106845 106916 72 Locate
ndhF gene − 108270 110486 2217 Locate
rpl32 gene + 110938 111108 171 Locate
trnL-UAG gene + 111813 111892 80 Locate
ccsA gene + 111985 112962 978 Locate
ndhD gene − 113194 114735 1542 Locate
psaC gene − 114845 115090 246 Locate
ndhE gene − 115341 115646 306 Locate
ndhG gene − 115862 116392 531 Locate
ndhI gene − 116769 117275 507 Locate
ndhA gene − 117356 119432 2077 Locate
ndhH gene − 119434 120615 1182 Locate
rps15 gene − 120715 120987 273 Locate
ycf1 gene − 121413 126929 5517 Locate
trnN-GUU gene + 127259 127330 72 Locate
trnR-ACG gene − 127850 127923 74 Locate
rrn5S gene − 128167 128287 121 Locate
rrn4.5S gene − 128512 128614 103 Locate
rrn23S gene − 128713 131523 2811 Locate
trnA-UGC gene − 131689 132556 868 Locate
trnI-GAU gene − 132621 133632 1012 Locate
rrn16S gene − 133931 135421 1491 Locate
trnV-GAC gene − 135648 135719 72 Locate
rps12 gene + 137323 138106 784 Locate
rps7 gene + 138160 138627 468 Locate
ndhB gene + 138956 141109 2154 Locate
trnL-CAA gene + 141669 141749 81 Locate
ycf15 gene − 142010 142207 198 Locate
ycf2 gene − 142349 149182 6834 Locate
trnI-CAU gene + 149271 149344 74 Locate
rpl23 gene + 149510 149791 282 Locate
rpl2 gene + 149810 151292 1483 Locate
Status Available
Accession OR652279.1
Length 151,394 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 77
Direct 24
Inverted 11
Palindromic 10
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources