Satureja hortensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP316497.1 · 12–86 bp · −
psbA · PP316497.1 · 429–1,487 bp · −
trnK-UUU · PP316497.1 · 1,707–4,290 bp · −
matK · PP316497.1 · 2,001–3,554 bp · −
rps16 · PP316497.1 · 4,837–5,981 bp · −
trnQ-UUG · PP316497.1 · 6,957–7,029 bp · −
trnS-GCU · PP316497.1 · 8,251–8,338 bp · −
atpA · PP316497.1 · 10,156–11,679 bp · −
atpF · PP316497.1 · 11,785–13,040 bp · −
atpH · PP316497.1 · 13,315–13,560 bp · −
atpI · PP316497.1 · 14,598–15,341 bp · −
rps2 · PP316497.1 · 15,574–16,284 bp · −
rpoC2 · PP316497.1 · 16,514–20,713 bp · −
rpoC1 · PP316497.1 · 20,874–23,685 bp · −
rpoB · PP316497.1 · 23,712–26,924 bp · −
psbM · PP316497.1 · 29,335–29,439 bp · −
trnD-GUC · PP316497.1 · 29,956–30,032 bp · −
trnY-GUA · PP316497.1 · 30,140–30,225 bp · −
trnE-UUC · PP316497.1 · 30,306–30,378 bp · −
trnS-UGA · PP316497.1 · 34,852–34,944 bp · −
trnM-CAU · PP316497.1 · 35,981–36,055 bp · −
rps14 · PP316497.1 · 36,200–36,502 bp · −
psaB · PP316497.1 · 36,626–38,830 bp · −
psaA · PP316497.1 · 38,856–41,108 bp · −
ycf3 · PP316497.1 · 41,873–43,811 bp · −
rps4 · PP316497.1 · 45,033–45,638 bp · −
trnT-UGU · PP316497.1 · 46,027–46,101 bp · −
ndhJ · PP316497.1 · 48,337–48,813 bp · −
ndhK · PP316497.1 · 48,924–49,601 bp · −
ndhC · PP316497.1 · 49,653–50,015 bp · −
trnV-UAC · PP316497.1 · 50,977–51,626 bp · −
atpE · PP316497.1 · 52,075–52,476 bp · −
atpB · PP316497.1 · 52,473–53,963 bp · −
psbJ · PP316497.1 · 63,455–63,577 bp · −
psbL · PP316497.1 · 63,712–63,828 bp · −
psbF · PP316497.1 · 63,852–63,971 bp · −
psbE · PP316497.1 · 63,986–64,237 bp · −
trnW-CCA · PP316497.1 · 65,610–65,683 bp · −
trnP-UGG · PP316497.1 · 65,855–65,930 bp · −
rpl20 · PP316497.1 · 67,711–68,097 bp · −
rps12 · PP316497.1 · 68,911–69,024 bp · −
rps12 · PP316497.1 · 96,224–97,017 bp · −
clpP1 · PP316497.1 · 69,145–71,053 bp · −
psbN · PP316497.1 · 73,376–73,507 bp · −
rpoA · PP316497.1 · 76,884–77,891 bp · −
rps11 · PP316497.1 · 77,962–78,378 bp · −
rpl36 · PP316497.1 · 78,488–78,601 bp · −
infA · PP316497.1 · 78,697–78,930 bp · −
rps8 · PP316497.1 · 79,051–79,455 bp · −
rpl14 · PP316497.1 · 79,638–80,006 bp · −
rpl16 · PP316497.1 · 80,138–81,411 bp · −
rps3 · PP316497.1 · 81,548–82,210 bp · −
rpl22 · PP316497.1 · 82,195–82,662 bp · −
rps19 · PP316497.1 · 82,726–83,004 bp · −
rpl2 · PP316497.1 · 83,065–84,554 bp · −
rpl23 · PP316497.1 · 84,573–84,854 bp · −
trnM-CAU · PP316497.1 · 85,019–85,093 bp · −
trnL-CAA · PP316497.1 · 92,588–92,670 bp · −
ndhB · PP316497.1 · 93,230–95,437 bp · −
rps7 · PP316497.1 · 95,703–96,170 bp · −
trnN-GUU · PP316497.1 · 107,082–107,155 bp · −
ndhF · PP316497.1 · 108,507–110,738 bp · −
ndhD · PP316497.1 · 113,514–115,016 bp · −
psaC · PP316497.1 · 115,137–115,382 bp · −
ndhE · PP316497.1 · 115,623–115,928 bp · −
ndhG · PP316497.1 · 116,157–116,687 bp · −
ndhI · PP316497.1 · 117,072–117,578 bp · −
ndhA · PP316497.1 · 117,659–119,737 bp · −
ndhH · PP316497.1 · 119,739–120,920 bp · −
rps15 · PP316497.1 · 121,020–121,292 bp · −
ycf1 · PP316497.1 · 121,712–127,258 bp · −
trnR-ACG · PP316497.1 · 128,177–128,251 bp · −
rrn5S · PP316497.1 · 128,495–128,616 bp · −
rrn4.5S · PP316497.1 · 128,709–128,978 bp · −
rrn23 · PP316497.1 · 129,077–131,887 bp · −
trnA-UGC · PP316497.1 · 132,053–132,929 bp · −
trnI-GAU · PP316497.1 · 132,987–134,005 bp · −
rrn16 · PP316497.1 · 134,304–135,794 bp · −
trnV-GAC · PP316497.1 · 136,021–136,092 bp · −
ycf15 · PP316497.1 · 142,408–142,605 bp · −
ycf2 · PP316497.1 · 142,747–149,559 bp · −
psbK · PP316497.1 · 7,411–7,596 bp · +
psbI · PP316497.1 · 7,992–8,102 bp · +
trnG-TCC · PP316497.1 · 9,036–9,789 bp · +
trnR-UCU · PP316497.1 · 9,977–10,048 bp · +
trnC-GCA · PP316497.1 · 28,060–28,130 bp · +
petN · PP316497.1 · 28,291–28,380 bp · +
trnT-GGU · PP316497.1 · 30,927–31,000 bp · +
psbD · PP316497.1 · 32,180–33,241 bp · +
psbC · PP316497.1 · 33,189–34,610 bp · +
psbZ · PP316497.1 · 35,289–35,477 bp · +
trnG-GCC · PP316497.1 · 35,751–35,822 bp · +
trnS-GGA · PP316497.1 · 44,660–44,747 bp · +
trnL-UAA · PP316497.1 · 46,762–47,339 bp · +
trnF-GAA · PP316497.1 · 47,640–47,713 bp · +
trnM-CAU · PP316497.1 · 51,807–51,879 bp · +
rbcL · PP316497.1 · 54,739–56,172 bp · +
accD · PP316497.1 · 56,873–58,312 bp · +
psaI · PP316497.1 · 58,793–58,903 bp · +
ycf4 · PP316497.1 · 59,350–59,904 bp · +
cemA · PP316497.1 · 60,564–61,253 bp · +
petA · PP316497.1 · 61,467–62,429 bp · +
petL · PP316497.1 · 65,110–65,205 bp · +
petG · PP316497.1 · 65,376–65,489 bp · +
psaJ · PP316497.1 · 66,210–66,344 bp · +
rpl33 · PP316497.1 · 66,795–66,998 bp · +
rps18 · PP316497.1 · 67,169–67,474 bp · +
rps12 · PP316497.1 · 137,724–138,517 bp · +
psbB · PP316497.1 · 71,505–73,031 bp · +
psbT · PP316497.1 · 73,211–73,312 bp · +
psbH · PP316497.1 · 73,613–73,834 bp · +
petB · PP316497.1 · 73,960–75,336 bp · +
petD · PP316497.1 · 75,524–76,710 bp · +
ycf2 · PP316497.1 · 85,182–91,994 bp · +
ycf15 · PP316497.1 · 92,136–92,333 bp · +
trnV-GAC · PP316497.1 · 98,649–98,720 bp · +
rrn16 · PP316497.1 · 98,947–100,437 bp · +
trnI · PP316497.1 · 100,736–101,754 bp · +
trnA-UGC · PP316497.1 · 101,812–102,688 bp · +
rrn23 · PP316497.1 · 102,854–105,664 bp · +
rrn4.5S · PP316497.1 · 105,763–106,032 bp · +
rrn5S · PP316497.1 · 106,125–106,246 bp · +
trnR-ACG · PP316497.1 · 106,490–106,564 bp · +
ycf1 · PP316497.1 · 107,483–108,613 bp · +
rpl32 · PP316497.1 · 111,206–111,376 bp · +
trnL-UAG · PP316497.1 · 112,118–112,197 bp · +
ccsA · PP316497.1 · 112,298–113,275 bp · +
trnN-GUU · PP316497.1 · 127,586–127,659 bp · +
rps7 · PP316497.1 · 138,571–139,038 bp · +
ndhB · PP316497.1 · 139,304–141,511 bp · +
trnL-CAA · PP316497.1 · 142,071–142,153 bp · +
trnM-CAU · PP316497.1 · 149,648–149,722 bp · +
rpl23 · PP316497.1 · 149,887–150,168 bp · +
rpl2 · PP316497.1 · 150,187–151,676 bp · +
rps19 · PP316497.1 · 151,737–151,777 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Satureja hortensis
ANNOTATED PLASTOME
PP316497.1
151,777 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37944 75888 113833 151777 bp
Forward strand 5′ → 3′
psbK psbI trnG-TCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 86 75 Locate
psbA gene − 429 1487 1059 Locate
trnK-UUU gene − 1707 4290 2584 Locate
matK gene − 2001 3554 1554 Locate
rps16 gene − 4837 5981 1145 Locate
trnQ-UUG gene − 6957 7029 73 Locate
psbK gene + 7411 7596 186 Locate
psbI gene + 7992 8102 111 Locate
trnS-GCU gene − 8251 8338 88 Locate
trnG-TCC gene + 9036 9789 754 Locate
trnR-UCU gene + 9977 10048 72 Locate
atpA gene − 10156 11679 1524 Locate
atpF gene − 11785 13040 1256 Locate
atpH gene − 13315 13560 246 Locate
atpI gene − 14598 15341 744 Locate
rps2 gene − 15574 16284 711 Locate
rpoC2 gene − 16514 20713 4200 Locate
rpoC1 gene − 20874 23685 2812 Locate
rpoB gene − 23712 26924 3213 Locate
trnC-GCA gene + 28060 28130 71 Locate
petN gene + 28291 28380 90 Locate
psbM gene − 29335 29439 105 Locate
trnD-GUC gene − 29956 30032 77 Locate
trnY-GUA gene − 30140 30225 86 Locate
trnE-UUC gene − 30306 30378 73 Locate
trnT-GGU gene + 30927 31000 74 Locate
psbD gene + 32180 33241 1062 Locate
psbC gene + 33189 34610 1422 Locate
trnS-UGA gene − 34852 34944 93 Locate
psbZ gene + 35289 35477 189 Locate
trnG-GCC gene + 35751 35822 72 Locate
trnM-CAU gene − 35981 36055 75 Locate
rps14 gene − 36200 36502 303 Locate
psaB gene − 36626 38830 2205 Locate
psaA gene − 38856 41108 2253 Locate
ycf3 gene − 41873 43811 1939 Locate
trnS-GGA gene + 44660 44747 88 Locate
rps4 gene − 45033 45638 606 Locate
trnT-UGU gene − 46027 46101 75 Locate
trnL-UAA gene + 46762 47339 578 Locate
trnF-GAA gene + 47640 47713 74 Locate
ndhJ gene − 48337 48813 477 Locate
ndhK gene − 48924 49601 678 Locate
ndhC gene − 49653 50015 363 Locate
trnV-UAC gene − 50977 51626 650 Locate
trnM-CAU gene + 51807 51879 73 Locate
atpE gene − 52075 52476 402 Locate
atpB gene − 52473 53963 1491 Locate
rbcL gene + 54739 56172 1434 Locate
accD gene + 56873 58312 1440 Locate
psaI gene + 58793 58903 111 Locate
ycf4 gene + 59350 59904 555 Locate
cemA gene + 60564 61253 690 Locate
petA gene + 61467 62429 963 Locate
psbJ gene − 63455 63577 123 Locate
psbL gene − 63712 63828 117 Locate
psbF gene − 63852 63971 120 Locate
psbE gene − 63986 64237 252 Locate
petL gene + 65110 65205 96 Locate
petG gene + 65376 65489 114 Locate
trnW-CCA gene − 65610 65683 74 Locate
trnP-UGG gene − 65855 65930 76 Locate
psaJ gene + 66210 66344 135 Locate
rpl33 gene + 66795 66998 204 Locate
rps18 gene + 67169 67474 306 Locate
rpl20 gene − 67711 68097 387 Locate
rps12 gene − 68911 69024 114 Locate
clpP1 gene − 69145 71053 1909 Locate
psbB gene + 71505 73031 1527 Locate
psbT gene + 73211 73312 102 Locate
psbN gene − 73376 73507 132 Locate
psbH gene + 73613 73834 222 Locate
petB gene + 73960 75336 1377 Locate
petD gene + 75524 76710 1187 Locate
rpoA gene − 76884 77891 1008 Locate
rps11 gene − 77962 78378 417 Locate
rpl36 gene − 78488 78601 114 Locate
infA gene − 78697 78930 234 Locate
rps8 gene − 79051 79455 405 Locate
rpl14 gene − 79638 80006 369 Locate
rpl16 gene − 80138 81411 1274 Locate
rps3 gene − 81548 82210 663 Locate
rpl22 gene − 82195 82662 468 Locate
rps19 gene − 82726 83004 279 Locate
rpl2 gene − 83065 84554 1490 Locate
rpl23 gene − 84573 84854 282 Locate
trnM-CAU gene − 85019 85093 75 Locate
ycf2 gene + 85182 91994 6813 Locate
ycf15 gene + 92136 92333 198 Locate
trnL-CAA gene − 92588 92670 83 Locate
ndhB gene − 93230 95437 2208 Locate
rps7 gene − 95703 96170 468 Locate
rps12 gene − 96224 97017 794 Locate
trnV-GAC gene + 98649 98720 72 Locate
rrn16 gene + 98947 100437 1491 Locate
trnI gene + 100736 101754 1019 Locate
trnA-UGC gene + 101812 102688 877 Locate
rrn23 gene + 102854 105664 2811 Locate
rrn4.5S gene + 105763 106032 270 Locate
rrn5S gene + 106125 106246 122 Locate
trnR-ACG gene + 106490 106564 75 Locate
trnN-GUU gene − 107082 107155 74 Locate
ycf1 gene + 107483 108613 1131 Locate
ndhF gene − 108507 110738 2232 Locate
rpl32 gene + 111206 111376 171 Locate
trnL-UAG gene + 112118 112197 80 Locate
ccsA gene + 112298 113275 978 Locate
ndhD gene − 113514 115016 1503 Locate
psaC gene − 115137 115382 246 Locate
ndhE gene − 115623 115928 306 Locate
ndhG gene − 116157 116687 531 Locate
ndhI gene − 117072 117578 507 Locate
ndhA gene − 117659 119737 2079 Locate
ndhH gene − 119739 120920 1182 Locate
rps15 gene − 121020 121292 273 Locate
ycf1 gene − 121712 127258 5547 Locate
trnN-GUU gene + 127586 127659 74 Locate
trnR-ACG gene − 128177 128251 75 Locate
rrn5S gene − 128495 128616 122 Locate
rrn4.5S gene − 128709 128978 270 Locate
rrn23 gene − 129077 131887 2811 Locate
trnA-UGC gene − 132053 132929 877 Locate
trnI-GAU gene − 132987 134005 1019 Locate
rrn16 gene − 134304 135794 1491 Locate
trnV-GAC gene − 136021 136092 72 Locate
rps12 gene + 137724 138517 794 Locate
rps7 gene + 138571 139038 468 Locate
ndhB gene + 139304 141511 2208 Locate
trnL-CAA gene + 142071 142153 83 Locate
ycf15 gene − 142408 142605 198 Locate
ycf2 gene − 142747 149559 6813 Locate
trnM-CAU gene + 149648 149722 75 Locate
rpl23 gene + 149887 150168 282 Locate
rpl2 gene + 150187 151676 1490 Locate
rps19 gene + 151737 151777 41 Locate
Status Available
Accession PP316497.1
Length 151,777 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources