Satureja montana subsp. variegata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · PV480544.1 · 11–84 bp · −
psbA · PV480544.1 · 412–1,470 bp · −
trnK-UUU · PV480544.1 · 1,690–4,273 bp · −
matK · PV480544.1 · 1,984–3,537 bp · −
rps16 · PV480544.1 · 4,822–5,965 bp · −
trnQ-UUG · PV480544.1 · 6,932–7,003 bp · −
trnS-GCU · PV480544.1 · 8,225–8,312 bp · −
atpA · PV480544.1 · 10,118–11,641 bp · −
atpF · PV480544.1 · 11,737–12,982 bp · −
atpH · PV480544.1 · 13,255–13,500 bp · −
atpI · PV480544.1 · 14,533–15,276 bp · −
rps2 · PV480544.1 · 15,510–16,220 bp · −
rpoC2 · PV480544.1 · 16,446–20,645 bp · −
rpoC1 · PV480544.1 · 20,806–23,617 bp · −
rpoB · PV480544.1 · 23,644–26,856 bp · −
psbM · PV480544.1 · 29,281–29,385 bp · −
trnD-GUC · PV480544.1 · 29,904–29,977 bp · −
trnY-GUA · PV480544.1 · 30,087–30,170 bp · −
trnE-UUC · PV480544.1 · 30,254–30,326 bp · −
trnS-UGA · PV480544.1 · 34,821–34,913 bp · −
trnM-CAU · PV480544.1 · 35,945–36,018 bp · −
rps14 · PV480544.1 · 36,163–36,465 bp · −
psaB · PV480544.1 · 36,588–38,792 bp · −
psaA · PV480544.1 · 38,818–41,070 bp · −
ycf3 · PV480544.1 · 41,842–43,787 bp · −
rps4 · PV480544.1 · 45,000–45,605 bp · −
trnT-UGU · PV480544.1 · 45,987–46,059 bp · −
ndhJ · PV480544.1 · 48,305–48,781 bp · −
ndhK · PV480544.1 · 48,892–49,569 bp · −
ndhC · PV480544.1 · 49,621–49,983 bp · −
trnV-UAC · PV480544.1 · 50,937–51,587 bp · −
atpE · PV480544.1 · 52,051–52,452 bp · −
atpB · PV480544.1 · 52,449–53,939 bp · −
psbJ · PV480544.1 · 63,483–63,605 bp · −
psbL · PV480544.1 · 63,740–63,856 bp · −
psbF · PV480544.1 · 63,880–63,999 bp · −
psbE · PV480544.1 · 64,014–64,265 bp · −
trnW-CCA · PV480544.1 · 65,639–65,712 bp · −
trnP-UGG · PV480544.1 · 65,886–65,959 bp · −
rpl20 · PV480544.1 · 67,760–68,146 bp · −
rps12 · PV480544.1 · 68,954–69,067 bp · −
rps12 · PV480544.1 · 96,255–97,048 bp · −
clpP · PV480544.1 · 69,197–71,112 bp · −
psbN · PV480544.1 · 73,437–73,568 bp · −
rpoA · PV480544.1 · 76,941–77,948 bp · −
rps11 · PV480544.1 · 78,019–78,435 bp · −
rpl36 · PV480544.1 · 78,545–78,658 bp · −
infA · PV480544.1 · 78,754–78,987 bp · −
rps8 · PV480544.1 · 79,111–79,515 bp · −
rpl14 · PV480544.1 · 79,699–80,067 bp · −
rpl16 · PV480544.1 · 80,199–81,478 bp · −
rps3 · PV480544.1 · 81,570–82,232 bp · −
rpl22 · PV480544.1 · 82,217–82,684 bp · −
rps19 · PV480544.1 · 82,754–83,032 bp · −
rpl2 · PV480544.1 · 83,093–84,603 bp · −
rpl23 · PV480544.1 · 84,622–84,903 bp · −
trnM-CAU · PV480544.1 · 85,069–85,142 bp · −
trnL-CAA · PV480544.1 · 92,620–92,700 bp · −
ndhB · PV480544.1 · 93,261–95,468 bp · −
rps7 · PV480544.1 · 95,734–96,201 bp · −
trnN-GUU · PV480544.1 · 107,126–107,197 bp · −
ndhF · PV480544.1 · 108,550–110,781 bp · −
ndhD · PV480544.1 · 113,602–115,131 bp · −
psaC · PV480544.1 · 115,224–115,469 bp · −
ndhE · PV480544.1 · 115,710–116,015 bp · −
ndhG · PV480544.1 · 116,244–116,774 bp · −
ndhI · PV480544.1 · 117,166–117,672 bp · −
ndhA · PV480544.1 · 117,753–119,832 bp · −
ndhH · PV480544.1 · 119,834–121,015 bp · −
rps15 · PV480544.1 · 121,115–121,387 bp · −
ycf1 · PV480544.1 · 121,805–127,354 bp · −
trnR-ACG · PV480544.1 · 128,274–128,347 bp · −
rrn5S · PV480544.1 · 128,591–128,711 bp · −
rrn4.5S · PV480544.1 · 128,972–129,074 bp · −
rrn23S · PV480544.1 · 129,173–131,983 bp · −
trnA-UGC · PV480544.1 · 132,149–133,026 bp · −
trnE-UUC · PV480544.1 · 133,096–134,113 bp · −
rrn16S · PV480544.1 · 134,412–135,902 bp · −
trnV-GAC · PV480544.1 · 136,129–136,200 bp · −
ycf15 · PV480544.1 · 142,516–142,713 bp · −
psbK · PV480544.1 · 7,384–7,569 bp · +
psbI · PV480544.1 · 7,963–8,073 bp · +
trnT-CGU · PV480544.1 · 9,003–9,759 bp · +
trnR-UCU · PV480544.1 · 9,940–10,011 bp · +
trnC-GCA · PV480544.1 · 27,997–28,067 bp · +
petN · PV480544.1 · 28,228–28,317 bp · +
trnT-GGU · PV480544.1 · 30,888–30,959 bp · +
psbD · PV480544.1 · 32,145–33,206 bp · +
psbC · PV480544.1 · 33,154–34,575 bp · +
psbZ · PV480544.1 · 35,252–35,440 bp · +
trnG-GCC · PV480544.1 · 35,712–35,782 bp · +
trnS-GGA · PV480544.1 · 44,627–44,713 bp · +
trnL-UAA · PV480544.1 · 46,720–47,293 bp · +
trnF-GAA · PV480544.1 · 47,595–47,667 bp · +
trnM-CAU · PV480544.1 · 51,768–51,840 bp · +
rbcL · PV480544.1 · 54,729–56,162 bp · +
accD · PV480544.1 · 56,866–58,347 bp · +
psaI · PV480544.1 · 58,820–58,930 bp · +
ycf4 · PV480544.1 · 59,378–59,932 bp · +
cemA · PV480544.1 · 60,587–61,276 bp · +
petA · PV480544.1 · 61,490–62,452 bp · +
petL · PV480544.1 · 65,137–65,232 bp · +
petG · PV480544.1 · 65,405–65,518 bp · +
psaJ · PV480544.1 · 66,250–66,384 bp · +
rpl33 · PV480544.1 · 66,848–67,051 bp · +
rps18 · PV480544.1 · 67,222–67,527 bp · +
rps12 · PV480544.1 · 137,832–138,625 bp · +
psbB · PV480544.1 · 71,564–73,090 bp · +
psbT · PV480544.1 · 73,272–73,373 bp · +
psbH · PV480544.1 · 73,674–73,895 bp · +
petB · PV480544.1 · 74,021–75,398 bp · +
petD · PV480544.1 · 75,586–76,772 bp · +
ycf15 · PV480544.1 · 92,167–92,364 bp · +
trnV-GAC · PV480544.1 · 98,680–98,751 bp · +
rrn16S · PV480544.1 · 98,978–100,468 bp · +
trnI-GAU · PV480544.1 · 100,767–101,784 bp · +
trnA-UGC · PV480544.1 · 101,854–102,731 bp · +
rrn23S · PV480544.1 · 102,897–105,707 bp · +
rrn4.5S · PV480544.1 · 105,806–105,908 bp · +
rrn5S · PV480544.1 · 106,169–106,289 bp · +
trnR-ACG · PV480544.1 · 106,533–106,606 bp · +
rpl32 · PV480544.1 · 111,266–111,436 bp · +
trnL-UAG · PV480544.1 · 112,193–112,272 bp · +
ccsA · PV480544.1 · 112,382–113,359 bp · +
trnN-GUU · PV480544.1 · 127,683–127,754 bp · +
rps7 · PV480544.1 · 138,679–139,146 bp · +
ndhB · PV480544.1 · 139,412–141,619 bp · +
trnL-CAA · PV480544.1 · 142,180–142,260 bp · +
trnM-CAU · PV480544.1 · 149,738–149,811 bp · +
rpl23 · PV480544.1 · 149,977–150,258 bp · +
rpl2 · PV480544.1 · 150,277–151,787 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Satureja montana subsp. variegata
ANNOTATED PLASTOME
PV480544.1
151,890 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37972 75945 113918 151890 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnE-UUC rrn16S trnV-GAC ycf15
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 412 1470 1059 Locate
trnK-UUU gene − 1690 4273 2584 Locate
matK gene − 1984 3537 1554 Locate
rps16 gene − 4822 5965 1144 Locate
trnQ-UUG gene − 6932 7003 72 Locate
psbK gene + 7384 7569 186 Locate
psbI gene + 7963 8073 111 Locate
trnS-GCU gene − 8225 8312 88 Locate
trnT-CGU gene + 9003 9759 757 Locate
trnR-UCU gene + 9940 10011 72 Locate
atpA gene − 10118 11641 1524 Locate
atpF gene − 11737 12982 1246 Locate
atpH gene − 13255 13500 246 Locate
atpI gene − 14533 15276 744 Locate
rps2 gene − 15510 16220 711 Locate
rpoC2 gene − 16446 20645 4200 Locate
rpoC1 gene − 20806 23617 2812 Locate
rpoB gene − 23644 26856 3213 Locate
trnC-GCA gene + 27997 28067 71 Locate
petN gene + 28228 28317 90 Locate
psbM gene − 29281 29385 105 Locate
trnD-GUC gene − 29904 29977 74 Locate
trnY-GUA gene − 30087 30170 84 Locate
trnE-UUC gene − 30254 30326 73 Locate
trnT-GGU gene + 30888 30959 72 Locate
psbD gene + 32145 33206 1062 Locate
psbC gene + 33154 34575 1422 Locate
trnS-UGA gene − 34821 34913 93 Locate
psbZ gene + 35252 35440 189 Locate
trnG-GCC gene + 35712 35782 71 Locate
trnM-CAU gene − 35945 36018 74 Locate
rps14 gene − 36163 36465 303 Locate
psaB gene − 36588 38792 2205 Locate
psaA gene − 38818 41070 2253 Locate
ycf3 gene − 41842 43787 1946 Locate
trnS-GGA gene + 44627 44713 87 Locate
rps4 gene − 45000 45605 606 Locate
trnT-UGU gene − 45987 46059 73 Locate
trnL-UAA gene + 46720 47293 574 Locate
trnF-GAA gene + 47595 47667 73 Locate
ndhJ gene − 48305 48781 477 Locate
ndhK gene − 48892 49569 678 Locate
ndhC gene − 49621 49983 363 Locate
trnV-UAC gene − 50937 51587 651 Locate
trnM-CAU gene + 51768 51840 73 Locate
atpE gene − 52051 52452 402 Locate
atpB gene − 52449 53939 1491 Locate
rbcL gene + 54729 56162 1434 Locate
accD gene + 56866 58347 1482 Locate
psaI gene + 58820 58930 111 Locate
ycf4 gene + 59378 59932 555 Locate
cemA gene + 60587 61276 690 Locate
petA gene + 61490 62452 963 Locate
psbJ gene − 63483 63605 123 Locate
psbL gene − 63740 63856 117 Locate
psbF gene − 63880 63999 120 Locate
psbE gene − 64014 64265 252 Locate
petL gene + 65137 65232 96 Locate
petG gene + 65405 65518 114 Locate
trnW-CCA gene − 65639 65712 74 Locate
trnP-UGG gene − 65886 65959 74 Locate
psaJ gene + 66250 66384 135 Locate
rpl33 gene + 66848 67051 204 Locate
rps18 gene + 67222 67527 306 Locate
rpl20 gene − 67760 68146 387 Locate
rps12 gene − 68954 69067 114 Locate
clpP gene − 69197 71112 1916 Locate
psbB gene + 71564 73090 1527 Locate
psbT gene + 73272 73373 102 Locate
psbN gene − 73437 73568 132 Locate
psbH gene + 73674 73895 222 Locate
petB gene + 74021 75398 1378 Locate
petD gene + 75586 76772 1187 Locate
rpoA gene − 76941 77948 1008 Locate
rps11 gene − 78019 78435 417 Locate
rpl36 gene − 78545 78658 114 Locate
infA gene − 78754 78987 234 Locate
rps8 gene − 79111 79515 405 Locate
rpl14 gene − 79699 80067 369 Locate
rpl16 gene − 80199 81478 1280 Locate
rps3 gene − 81570 82232 663 Locate
rpl22 gene − 82217 82684 468 Locate
rps19 gene − 82754 83032 279 Locate
rpl2 gene − 83093 84603 1511 Locate
rpl23 gene − 84622 84903 282 Locate
trnM-CAU gene − 85069 85142 74 Locate
ycf15 gene + 92167 92364 198 Locate
trnL-CAA gene − 92620 92700 81 Locate
ndhB gene − 93261 95468 2208 Locate
rps7 gene − 95734 96201 468 Locate
rps12 gene − 96255 97048 794 Locate
trnV-GAC gene + 98680 98751 72 Locate
rrn16S gene + 98978 100468 1491 Locate
trnI-GAU gene + 100767 101784 1018 Locate
trnA-UGC gene + 101854 102731 878 Locate
rrn23S gene + 102897 105707 2811 Locate
rrn4.5S gene + 105806 105908 103 Locate
rrn5S gene + 106169 106289 121 Locate
trnR-ACG gene + 106533 106606 74 Locate
trnN-GUU gene − 107126 107197 72 Locate
ndhF gene − 108550 110781 2232 Locate
rpl32 gene + 111266 111436 171 Locate
trnL-UAG gene + 112193 112272 80 Locate
ccsA gene + 112382 113359 978 Locate
ndhD gene − 113602 115131 1530 Locate
psaC gene − 115224 115469 246 Locate
ndhE gene − 115710 116015 306 Locate
ndhG gene − 116244 116774 531 Locate
ndhI gene − 117166 117672 507 Locate
ndhA gene − 117753 119832 2080 Locate
ndhH gene − 119834 121015 1182 Locate
rps15 gene − 121115 121387 273 Locate
ycf1 gene − 121805 127354 5550 Locate
trnN-GUU gene + 127683 127754 72 Locate
trnR-ACG gene − 128274 128347 74 Locate
rrn5S gene − 128591 128711 121 Locate
rrn4.5S gene − 128972 129074 103 Locate
rrn23S gene − 129173 131983 2811 Locate
trnA-UGC gene − 132149 133026 878 Locate
trnE-UUC gene − 133096 134113 1018 Locate
rrn16S gene − 134412 135902 1491 Locate
trnV-GAC gene − 136129 136200 72 Locate
rps12 gene + 137832 138625 794 Locate
rps7 gene + 138679 139146 468 Locate
ndhB gene + 139412 141619 2208 Locate
trnL-CAA gene + 142180 142260 81 Locate
ycf15 gene − 142516 142713 198 Locate
trnM-CAU gene + 149738 149811 74 Locate
rpl23 gene + 149977 150258 282 Locate
rpl2 gene + 150277 151787 1511 Locate
Status Available
Accession PV480544.1
Length 151,890 bp
GC content 37.9%
Annotated genes 130
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 12 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources