Scutellaria calcarata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · MN128385.1 · 3–76 bp · −
psbA · MN128385.1 · 369–1,427 bp · −
trnK-UUU · MN128385.1 · 1,665–4,245 bp · −
matK · MN128385.1 · 1,956–3,491 bp · −
rps16 · MN128385.1 · 5,122–6,284 bp · −
trnQ-UUC · MN128385.1 · 7,321–7,392 bp · −
trnS-GCU · MN128385.1 · 8,515–8,602 bp · −
atpA · MN128385.1 · 10,383–11,906 bp · −
atpF · MN128385.1 · 11,989–13,215 bp · −
atpH · MN128385.1 · 13,575–13,820 bp · −
atpI · MN128385.1 · 14,817–15,560 bp · −
rps2 · MN128385.1 · 15,910–16,620 bp · −
rpoC2 · MN128385.1 · 16,837–21,042 bp · −
rpoC1 · MN128385.1 · 21,205–24,024 bp · −
rpoB · MN128385.1 · 24,051–27,263 bp · −
psbM · MN128385.1 · 30,289–30,393 bp · −
trnD-GUC · MN128385.1 · 30,920–30,993 bp · −
trnY-GUA · MN128385.1 · 31,107–31,190 bp · −
trnE-UUC · MN128385.1 · 31,250–31,322 bp · −
trnS-UCA · MN128385.1 · 35,940–36,032 bp · −
trnfM-GAU · MN128385.1 · 37,035–37,108 bp · −
rps14 · MN128385.1 · 37,258–37,560 bp · −
psaB · MN128385.1 · 37,688–39,892 bp · −
psaA · MN128385.1 · 39,918–42,170 bp · −
ycf3 · MN128385.1 · 42,839–44,761 bp · −
rps4 · MN128385.1 · 46,010–46,615 bp · −
trnT-UGU · MN128385.1 · 46,956–47,028 bp · −
ndhJ · MN128385.1 · 49,302–49,778 bp · −
ndhK · MN128385.1 · 49,886–50,563 bp · −
ndhC · MN128385.1 · 50,617–50,979 bp · −
trnV-UAC · MN128385.1 · 51,835–52,487 bp · −
atpE · MN128385.1 · 52,956–53,357 bp · −
atpB · MN128385.1 · 53,354–54,841 bp · −
pabJ · MN128385.1 · 64,469–64,591 bp · −
psbL · MN128385.1 · 64,725–64,841 bp · −
psbF · MN128385.1 · 64,865–64,984 bp · −
psbE · MN128385.1 · 64,999–65,250 bp · −
trnW-CCA · MN128385.1 · 66,662–66,735 bp · −
trnP-UGG · MN128385.1 · 66,905–66,978 bp · −
rpl20 · MN128385.1 · 68,772–69,158 bp · −
rps12 · MN128385.1 · 69,959–70,072 bp · −
rps12 · MN128385.1 · 97,257–98,050 bp · −
clpP · MN128385.1 · 70,215–72,147 bp · −
psbN · MN128385.1 · 74,485–74,616 bp · −
rpoA · MN128385.1 · 77,986–78,999 bp · −
rps11 · MN128385.1 · 79,071–79,487 bp · −
rps36 · MN128385.1 · 79,589–79,702 bp · −
infA · MN128385.1 · 79,798–80,031 bp · −
rps8 · MN128385.1 · 80,152–80,562 bp · −
rpl14 · MN128385.1 · 80,731–81,099 bp · −
rpl16 · MN128385.1 · 81,226–82,452 bp · −
rps3 · MN128385.1 · 82,607–83,269 bp · −
rpl22 · MN128385.1 · 83,271–83,726 bp · −
rps19 · MN128385.1 · 83,786–84,064 bp · −
rpl2 · MN128385.1 · 84,119–85,601 bp · −
rpl23 · MN128385.1 · 85,620–85,901 bp · −
trnI-GAU · MN128385.1 · 86,061–86,134 bp · −
trnL-CAA · MN128385.1 · 93,627–93,707 bp · −
ndhB · MN128385.1 · 94,250–96,461 bp · −
rps7 · MN128385.1 · 96,736–97,203 bp · −
trnN-GUU · MN128385.1 · 108,083–108,154 bp · −
ndhF · MN128385.1 · 109,231–111,471 bp · −
ndhD · MN128385.1 · 113,997–115,502 bp · −
psaC · MN128385.1 · 115,619–115,864 bp · −
ndhE · MN128385.1 · 116,121–116,426 bp · −
ndhG · MN128385.1 · 116,647–117,177 bp · −
ndhI · MN128385.1 · 117,542–118,042 bp · −
ndhA · MN128385.1 · 118,123–120,214 bp · −
ndhH · MN128385.1 · 120,216–121,397 bp · −
rps15 · MN128385.1 · 121,500–121,772 bp · −
ycf1 · MN128385.1 · 122,039–127,684 bp · −
trnR-ACC · MN128385.1 · 128,521–128,594 bp · −
rrn5 · MN128385.1 · 128,829–128,949 bp · −
rrn4.5 · MN128385.1 · 129,197–129,299 bp · −
rrn23 · MN128385.1 · 129,398–132,210 bp · −
trnA-UGC · MN128385.1 · 132,380–133,258 bp · −
trnI-GAU · MN128385.1 · 133,324–134,343 bp · −
rrn16 · MN128385.1 · 134,643–136,133 bp · −
trnV-GAC · MN128385.1 · 136,361–136,432 bp · −
ycf15 · MN128385.1 · 142,686–142,883 bp · −
ycf2 · MN128385.1 · 143,025–149,834 bp · −
psbK · MN128385.1 · 7,717–7,902 bp · +
psbI · MN128385.1 · 8,294–8,404 bp · +
trnG-CGA · MN128385.1 · 9,284–10,044 bp · +
trnR-UCU · MN128385.1 · 10,215–10,286 bp · +
trnC-GCA · MN128385.1 · 28,433–28,503 bp · +
petN · MN128385.1 · 29,207–29,296 bp · +
trnT-GGU · MN128385.1 · 31,898–31,969 bp · +
psbD · MN128385.1 · 33,275–34,336 bp · +
psbC · MN128385.1 · 34,284–35,705 bp · +
psbZ · MN128385.1 · 36,352–36,540 bp · +
trnG-GCC · MN128385.1 · 36,812–36,882 bp · +
trnS-GGA · MN128385.1 · 45,638–45,724 bp · +
trnL-UAA · MN128385.1 · 47,713–48,275 bp · +
trnF-GAA · MN128385.1 · 48,581–48,653 bp · +
trnM-CAU · MN128385.1 · 52,668–52,740 bp · +
rbcL · MN128385.1 · 55,614–57,056 bp · +
accD · MN128385.1 · 57,791–59,257 bp · +
psaI · MN128385.1 · 59,831–59,941 bp · +
ycf4 · MN128385.1 · 60,375–60,929 bp · +
cemA · MN128385.1 · 61,607–62,266 bp · +
petA · MN128385.1 · 62,473–63,435 bp · +
petL · MN128385.1 · 66,159–66,254 bp · +
petG · MN128385.1 · 66,430–66,543 bp · +
psaJ · MN128385.1 · 67,251–67,385 bp · +
rpl33 · MN128385.1 · 67,854–68,054 bp · +
rps18 · MN128385.1 · 68,229–68,534 bp · +
rps12 · MN128385.1 · 138,007–138,800 bp · +
psbB · MN128385.1 · 72,592–74,118 bp · +
psbT · MN128385.1 · 74,310–74,411 bp · +
psbH · MN128385.1 · 74,720–74,941 bp · +
petB · MN128385.1 · 75,066–76,433 bp · +
petD · MN128385.1 · 76,622–77,823 bp · +
ycf2 · MN128385.1 · 86,223–93,032 bp · +
ycf15 · MN128385.1 · 93,174–93,371 bp · +
trnV-GAC · MN128385.1 · 99,625–99,696 bp · +
rrn16 · MN128385.1 · 99,924–101,414 bp · +
trnI-GAU · MN128385.1 · 101,714–102,733 bp · +
trnA-UGC · MN128385.1 · 102,799–103,677 bp · +
rrn23 · MN128385.1 · 103,847–106,659 bp · +
rrn4.5 · MN128385.1 · 106,758–106,860 bp · +
rrn5 · MN128385.1 · 107,108–107,228 bp · +
trnR-ACG · MN128385.1 · 107,463–107,536 bp · +
ycf1 · MN128385.1 · 108,373–109,266 bp · +
rpl32 · MN128385.1 · 111,992–112,168 bp · +
trnL-UAG · MN128385.1 · 112,614–112,693 bp · +
ccsA · MN128385.1 · 112,790–113,764 bp · +
trnN-GUU · MN128385.1 · 127,903–127,974 bp · +
rps7 · MN128385.1 · 138,854–139,321 bp · +
ndhB · MN128385.1 · 139,596–141,807 bp · +
trnL-CAA · MN128385.1 · 142,350–142,430 bp · +
trnI-CAU · MN128385.1 · 149,923–149,996 bp · +
rpl23 · MN128385.1 · 150,156–150,437 bp · +
rpl2 · MN128385.1 · 150,456–151,938 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria calcarata
ANNOTATED PLASTOME
MN128385.1
152,033 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38008 76016 114025 152033 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1665 4245 2581 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5122 6284 1163 Locate
trnQ-UUC gene − 7321 7392 72 Locate
psbK gene + 7717 7902 186 Locate
psbI gene + 8294 8404 111 Locate
trnS-GCU gene − 8515 8602 88 Locate
trnG-CGA gene + 9284 10044 761 Locate
trnR-UCU gene + 10215 10286 72 Locate
atpA gene − 10383 11906 1524 Locate
atpF gene − 11989 13215 1227 Locate
atpH gene − 13575 13820 246 Locate
atpI gene − 14817 15560 744 Locate
rps2 gene − 15910 16620 711 Locate
rpoC2 gene − 16837 21042 4206 Locate
rpoC1 gene − 21205 24024 2820 Locate
rpoB gene − 24051 27263 3213 Locate
trnC-GCA gene + 28433 28503 71 Locate
petN gene + 29207 29296 90 Locate
psbM gene − 30289 30393 105 Locate
trnD-GUC gene − 30920 30993 74 Locate
trnY-GUA gene − 31107 31190 84 Locate
trnE-UUC gene − 31250 31322 73 Locate
trnT-GGU gene + 31898 31969 72 Locate
psbD gene + 33275 34336 1062 Locate
psbC gene + 34284 35705 1422 Locate
trnS-UCA gene − 35940 36032 93 Locate
psbZ gene + 36352 36540 189 Locate
trnG-GCC gene + 36812 36882 71 Locate
trnfM-GAU gene − 37035 37108 74 Locate
rps14 gene − 37258 37560 303 Locate
psaB gene − 37688 39892 2205 Locate
psaA gene − 39918 42170 2253 Locate
ycf3 gene − 42839 44761 1923 Locate
trnS-GGA gene + 45638 45724 87 Locate
rps4 gene − 46010 46615 606 Locate
trnT-UGU gene − 46956 47028 73 Locate
trnL-UAA gene + 47713 48275 563 Locate
trnF-GAA gene + 48581 48653 73 Locate
ndhJ gene − 49302 49778 477 Locate
ndhK gene − 49886 50563 678 Locate
ndhC gene − 50617 50979 363 Locate
trnV-UAC gene − 51835 52487 653 Locate
trnM-CAU gene + 52668 52740 73 Locate
atpE gene − 52956 53357 402 Locate
atpB gene − 53354 54841 1488 Locate
rbcL gene + 55614 57056 1443 Locate
accD gene + 57791 59257 1467 Locate
psaI gene + 59831 59941 111 Locate
ycf4 gene + 60375 60929 555 Locate
cemA gene + 61607 62266 660 Locate
petA gene + 62473 63435 963 Locate
pabJ gene − 64469 64591 123 Locate
psbL gene − 64725 64841 117 Locate
psbF gene − 64865 64984 120 Locate
psbE gene − 64999 65250 252 Locate
petL gene + 66159 66254 96 Locate
petG gene + 66430 66543 114 Locate
trnW-CCA gene − 66662 66735 74 Locate
trnP-UGG gene − 66905 66978 74 Locate
psaJ gene + 67251 67385 135 Locate
rpl33 gene + 67854 68054 201 Locate
rps18 gene + 68229 68534 306 Locate
rpl20 gene − 68772 69158 387 Locate
rps12 gene − 69959 70072 114 Locate
clpP gene − 70215 72147 1933 Locate
psbB gene + 72592 74118 1527 Locate
psbT gene + 74310 74411 102 Locate
psbN gene − 74485 74616 132 Locate
psbH gene + 74720 74941 222 Locate
petB gene + 75066 76433 1368 Locate
petD gene + 76622 77823 1202 Locate
rpoA gene − 77986 78999 1014 Locate
rps11 gene − 79071 79487 417 Locate
rps36 gene − 79589 79702 114 Locate
infA gene − 79798 80031 234 Locate
rps8 gene − 80152 80562 411 Locate
rpl14 gene − 80731 81099 369 Locate
rpl16 gene − 81226 82452 1227 Locate
rps3 gene − 82607 83269 663 Locate
rpl22 gene − 83271 83726 456 Locate
rps19 gene − 83786 84064 279 Locate
rpl2 gene − 84119 85601 1483 Locate
rpl23 gene − 85620 85901 282 Locate
trnI-GAU gene − 86061 86134 74 Locate
ycf2 gene + 86223 93032 6810 Locate
ycf15 gene + 93174 93371 198 Locate
trnL-CAA gene − 93627 93707 81 Locate
ndhB gene − 94250 96461 2212 Locate
rps7 gene − 96736 97203 468 Locate
rps12 gene − 97257 98050 794 Locate
trnV-GAC gene + 99625 99696 72 Locate
rrn16 gene + 99924 101414 1491 Locate
trnI-GAU gene + 101714 102733 1020 Locate
trnA-UGC gene + 102799 103677 879 Locate
rrn23 gene + 103847 106659 2813 Locate
rrn4.5 gene + 106758 106860 103 Locate
rrn5 gene + 107108 107228 121 Locate
trnR-ACG gene + 107463 107536 74 Locate
trnN-GUU gene − 108083 108154 72 Locate
ycf1 gene + 108373 109266 894 Locate
ndhF gene − 109231 111471 2241 Locate
rpl32 gene + 111992 112168 177 Locate
trnL-UAG gene + 112614 112693 80 Locate
ccsA gene + 112790 113764 975 Locate
ndhD gene − 113997 115502 1506 Locate
psaC gene − 115619 115864 246 Locate
ndhE gene − 116121 116426 306 Locate
ndhG gene − 116647 117177 531 Locate
ndhI gene − 117542 118042 501 Locate
ndhA gene − 118123 120214 2092 Locate
ndhH gene − 120216 121397 1182 Locate
rps15 gene − 121500 121772 273 Locate
ycf1 gene − 122039 127684 5646 Locate
trnN-GUU gene + 127903 127974 72 Locate
trnR-ACC gene − 128521 128594 74 Locate
rrn5 gene − 128829 128949 121 Locate
rrn4.5 gene − 129197 129299 103 Locate
rrn23 gene − 129398 132210 2813 Locate
trnA-UGC gene − 132380 133258 879 Locate
trnI-GAU gene − 133324 134343 1020 Locate
rrn16 gene − 134643 136133 1491 Locate
trnV-GAC gene − 136361 136432 72 Locate
rps12 gene + 138007 138800 794 Locate
rps7 gene + 138854 139321 468 Locate
ndhB gene + 139596 141807 2212 Locate
trnL-CAA gene + 142350 142430 81 Locate
ycf15 gene − 142686 142883 198 Locate
ycf2 gene − 143025 149834 6810 Locate
trnI-CAU gene + 149923 149996 74 Locate
rpl23 gene + 150156 150437 282 Locate
rpl2 gene + 150456 151938 1483 Locate
Status Available
Accession MN128385.1
Length 152,033 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources