Coordinate-aware organelle record

Scutellaria calcarata chloroplast genome

Available MN128385.1 152,033 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	368	1427	1059
trnK-UUU	gene	translation-rna	−	1664	4245	2581
matK	gene	other	−	1955	3491	1536
rps16	gene	ribosomal-protein	−	5121	6284	1163
trnQ-UUC	gene	translation-rna	−	7320	7392	72
psbK	gene	photosystem-ii	+	7716	7902	186
psbI	gene	photosystem-ii	+	8293	8404	111
trnS-GCU	gene	translation-rna	−	8514	8602	88
trnG-CGA	gene	translation-rna	+	9283	10044	761
trnR-UCU	gene	translation-rna	+	10214	10286	72
atpA	gene	atp-synthase	−	10382	11906	1524
atpF	gene	atp-synthase	−	11988	13215	1227
atpH	gene	atp-synthase	−	13574	13820	246
atpI	gene	atp-synthase	−	14816	15560	744
rps2	gene	ribosomal-protein	−	15909	16620	711
rpoC2	gene	rna-polymerase	−	16836	21042	4206
rpoC1	gene	rna-polymerase	−	21204	24024	2820
rpoB	gene	rna-polymerase	−	24050	27263	3213
trnC-GCA	gene	translation-rna	+	28432	28503	71
petN	gene	cytochrome	+	29206	29296	90
psbM	gene	photosystem-ii	−	30288	30393	105
trnD-GUC	gene	translation-rna	−	30919	30993	74
trnY-GUA	gene	translation-rna	−	31106	31190	84
trnE-UUC	gene	translation-rna	−	31249	31322	73
trnT-GGU	gene	translation-rna	+	31897	31969	72
psbD	gene	photosystem-ii	+	33274	34336	1062
psbC	gene	photosystem-ii	+	34283	35705	1422
trnS-UCA	gene	translation-rna	−	35939	36032	93
psbZ	gene	photosystem-ii	+	36351	36540	189
trnG-GCC	gene	translation-rna	+	36811	36882	71
trnfM-GAU	gene	translation-rna	−	37034	37108	74
rps14	gene	ribosomal-protein	−	37257	37560	303
psaB	gene	photosystem-i	−	37687	39892	2205
psaA	gene	photosystem-i	−	39917	42170	2253
ycf3	gene	other	−	42838	44761	1923
trnS-GGA	gene	translation-rna	+	45637	45724	87
rps4	gene	ribosomal-protein	−	46009	46615	606
trnT-UGU	gene	translation-rna	−	46955	47028	73
trnL-UAA	gene	translation-rna	+	47712	48275	563
trnF-GAA	gene	translation-rna	+	48580	48653	73
ndhJ	gene	nad-dehydrogenase	−	49301	49778	477
ndhK	gene	nad-dehydrogenase	−	49885	50563	678
ndhC	gene	nad-dehydrogenase	−	50616	50979	363
trnV-UAC	gene	translation-rna	−	51834	52487	653
trnM-CAU	gene	translation-rna	+	52667	52740	73
atpE	gene	atp-synthase	−	52955	53357	402
atpB	gene	atp-synthase	−	53353	54841	1488
rbcL	gene	other	+	55613	57056	1443
accD	gene	other	+	57790	59257	1467
psaI	gene	photosystem-i	+	59830	59941	111
ycf4	gene	other	+	60374	60929	555
cemA	gene	other	+	61606	62266	660
petA	gene	cytochrome	+	62472	63435	963
pabJ	gene	other	−	64468	64591	123
psbL	gene	photosystem-ii	−	64724	64841	117
psbF	gene	photosystem-ii	−	64864	64984	120
psbE	gene	photosystem-ii	−	64998	65250	252
petL	gene	cytochrome	+	66158	66254	96
petG	gene	cytochrome	+	66429	66543	114
trnW-CCA	gene	translation-rna	−	66661	66735	74
trnP-UGG	gene	translation-rna	−	66904	66978	74
psaJ	gene	photosystem-i	+	67250	67385	135
rpl33	gene	ribosomal-protein	+	67853	68054	201
rps18	gene	ribosomal-protein	+	68228	68534	306
rpl20	gene	ribosomal-protein	−	68771	69158	387
rps12	gene	ribosomal-protein	−	69958	98050	28092
rps12	gene	ribosomal-protein	+	69958	138800	68842
clpP	gene	other	−	70214	72147	1933
psbB	gene	photosystem-ii	+	72591	74118	1527
psbT	gene	photosystem-ii	+	74309	74411	102
psbN	gene	photosystem-ii	−	74484	74616	132
psbH	gene	photosystem-ii	+	74719	74941	222
petB	gene	cytochrome	+	75065	76433	1368
petD	gene	cytochrome	+	76621	77823	1202
rpoA	gene	rna-polymerase	−	77985	78999	1014
rps11	gene	ribosomal-protein	−	79070	79487	417
rps36	gene	ribosomal-protein	−	79588	79702	114
infA	gene	other	−	79797	80031	234
rps8	gene	ribosomal-protein	−	80151	80562	411
rpl14	gene	ribosomal-protein	−	80730	81099	369
rpl16	gene	ribosomal-protein	−	81225	82452	1227
rps3	gene	ribosomal-protein	−	82606	83269	663
rpl22	gene	ribosomal-protein	−	83270	83726	456
rps19	gene	ribosomal-protein	−	83785	84064	279
rpl2	gene	ribosomal-protein	−	84118	85601	1483
rpl23	gene	ribosomal-protein	−	85619	85901	282
trnI-GAU	gene	translation-rna	−	86060	86134	74
ycf2	gene	other	+	86222	93032	6810
ycf15	gene	other	+	93173	93371	198
trnL-CAA	gene	translation-rna	−	93626	93707	81
ndhB	gene	nad-dehydrogenase	−	94249	96461	2212
rps7	gene	ribosomal-protein	−	96735	97203	468
trnV-GAC	gene	translation-rna	+	99624	99696	72
rrn16	gene	ribosomal-rna	+	99923	101414	1491
trnI-GAU	gene	translation-rna	+	101713	102733	1020
trnA-UGC	gene	translation-rna	+	102798	103677	879
rrn23	gene	ribosomal-rna	+	103846	106659	2813
rrn4.5	gene	ribosomal-rna	+	106757	106860	103
rrn5	gene	ribosomal-rna	+	107107	107228	121
trnR-ACG	gene	translation-rna	+	107462	107536	74
trnN-GUU	gene	translation-rna	−	108082	108154	72
ycf1	gene	other	+	108372	109266	894
ndhF	gene	nad-dehydrogenase	−	109230	111471	2241
rpl32	gene	ribosomal-protein	+	111991	112168	177
trnL-UAG	gene	translation-rna	+	112613	112693	80
ccsA	gene	other	+	112789	113764	975
ndhD	gene	nad-dehydrogenase	−	113996	115502	1506
psaC	gene	photosystem-i	−	115618	115864	246
ndhE	gene	nad-dehydrogenase	−	116120	116426	306
ndhG	gene	nad-dehydrogenase	−	116646	117177	531
ndhI	gene	nad-dehydrogenase	−	117541	118042	501
ndhA	gene	nad-dehydrogenase	−	118122	120214	2092
ndhH	gene	nad-dehydrogenase	−	120215	121397	1182
rps15	gene	ribosomal-protein	−	121499	121772	273
ycf1	gene	other	−	122038	127684	5646
trnN-GUU	gene	translation-rna	+	127902	127974	72
trnR-ACC	gene	translation-rna	−	128520	128594	74
rrn5	gene	ribosomal-rna	−	128828	128949	121
rrn4.5	gene	ribosomal-rna	−	129196	129299	103
rrn23	gene	ribosomal-rna	−	129397	132210	2813
trnA-UGC	gene	translation-rna	−	132379	133258	879
trnI-GAU	gene	translation-rna	−	133323	134343	1020
rrn16	gene	ribosomal-rna	−	134642	136133	1491
trnV-GAC	gene	translation-rna	−	136360	136432	72
rps7	gene	ribosomal-protein	+	138853	139321	468
ndhB	gene	nad-dehydrogenase	+	139595	141807	2212
trnL-CAA	gene	translation-rna	+	142349	142430	81
ycf15	gene	other	−	142685	142883	198
ycf2	gene	other	−	143024	149834	6810
trnI-CAU	gene	translation-rna	+	149922	149996	74
rpl23	gene	ribosomal-protein	+	150155	150437	282
rpl2	gene	ribosomal-protein	+	150455	151938	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMN128385.1DNA · accDMN128385DNA · atpBMN128385DNA · matKMN128385DNA · ndhFMN128385DNA · psbAMN128385DNA · rbcLMN128385DNA · rps12MN128385DNA · ycf1MN128385