Scutellaria colpodea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130064.1 · 4–77 bp · −
psbA · PZ130064.1 · 374–1,432 bp · −
trnK-UUU · PZ130064.1 · 1,678–4,251 bp · −
matK · PZ130064.1 · 1,964–3,490 bp · −
rps16 · PZ130064.1 · 5,158–6,315 bp · −
trnQ-UUC · PZ130064.1 · 7,061–7,132 bp · −
trnS-GCU · PZ130064.1 · 8,262–8,349 bp · −
atpA · PZ130064.1 · 10,231–11,754 bp · −
atpF · PZ130064.1 · 11,836–13,065 bp · −
atpH · PZ130064.1 · 13,426–13,671 bp · −
atpI · PZ130064.1 · 14,659–15,402 bp · −
rps2 · PZ130064.1 · 15,748–16,458 bp · −
rpoC2 · PZ130064.1 · 16,673–20,878 bp · −
rpoC1 · PZ130064.1 · 21,033–23,869 bp · −
rpoB · PZ130064.1 · 23,896–27,108 bp · −
psbM · PZ130064.1 · 30,165–30,269 bp · −
trnD-GUC · PZ130064.1 · 30,795–30,868 bp · −
trnY-GUA · PZ130064.1 · 30,982–31,065 bp · −
trnE-UUC · PZ130064.1 · 31,125–31,197 bp · −
trnS-UCA · PZ130064.1 · 35,822–35,914 bp · −
trnfM-GAU · PZ130064.1 · 36,912–36,985 bp · −
rps14 · PZ130064.1 · 37,140–37,442 bp · −
psaB · PZ130064.1 · 37,571–39,775 bp · −
psaA · PZ130064.1 · 39,801–42,053 bp · −
ycf3 · PZ130064.1 · 42,750–44,670 bp · −
rps4 · PZ130064.1 · 45,922–46,527 bp · −
trnT-UGU · PZ130064.1 · 46,874–46,946 bp · −
ndhJ · PZ130064.1 · 49,203–49,679 bp · −
ndhK · PZ130064.1 · 49,788–50,465 bp · −
ndhC · PZ130064.1 · 50,519–50,881 bp · −
trnV-UAC · PZ130064.1 · 51,867–52,519 bp · −
atpE · PZ130064.1 · 52,974–53,375 bp · −
atpB · PZ130064.1 · 53,372–54,868 bp · −
pabJ · PZ130064.1 · 64,606–64,728 bp · −
psbL · PZ130064.1 · 64,862–64,978 bp · −
psbF · PZ130064.1 · 65,002–65,121 bp · −
psbE · PZ130064.1 · 65,136–65,387 bp · −
trnW-CCA · PZ130064.1 · 66,768–66,841 bp · −
trnP-UGG · PZ130064.1 · 67,011–67,084 bp · −
rpl20 · PZ130064.1 · 68,881–69,267 bp · −
rps12 · PZ130064.1 · 70,062–70,175 bp · −
rps12 · PZ130064.1 · 97,325–98,118 bp · −
clpP · PZ130064.1 · 70,317–72,245 bp · −
psbN · PZ130064.1 · 74,583–74,714 bp · −
rpoA · PZ130064.1 · 78,278–79,078 bp · −
rps11 · PZ130064.1 · 79,150–79,566 bp · −
rps36 · PZ130064.1 · 79,668–79,781 bp · −
infA · PZ130064.1 · 79,876–80,109 bp · −
rps8 · PZ130064.1 · 80,233–80,643 bp · −
rpl14 · PZ130064.1 · 80,797–81,165 bp · −
rpl16 · PZ130064.1 · 81,292–82,525 bp · −
rps3 · PZ130064.1 · 82,681–83,343 bp · −
rpl22 · PZ130064.1 · 83,345–83,800 bp · −
rps19 · PZ130064.1 · 83,860–84,138 bp · −
rpl2 · PZ130064.1 · 84,193–85,674 bp · −
rpl23 · PZ130064.1 · 85,693–85,974 bp · −
trnI-GAU · PZ130064.1 · 86,134–86,207 bp · −
trnL-CAA · PZ130064.1 · 93,695–93,775 bp · −
ndhB · PZ130064.1 · 94,318–96,529 bp · −
rps7 · PZ130064.1 · 96,804–97,271 bp · −
trnN-GUU · PZ130064.1 · 108,156–108,227 bp · −
ndhF · PZ130064.1 · 109,284–111,545 bp · −
ndhD · PZ130064.1 · 113,895–115,424 bp · −
psaC · PZ130064.1 · 115,525–115,770 bp · −
ndhE · PZ130064.1 · 116,026–116,331 bp · −
ndhG · PZ130064.1 · 116,548–117,078 bp · −
ndhI · PZ130064.1 · 117,445–117,945 bp · −
ndhA · PZ130064.1 · 118,031–120,152 bp · −
ndhH · PZ130064.1 · 120,154–121,335 bp · −
rps15 · PZ130064.1 · 121,432–121,704 bp · −
ycf1 · PZ130064.1 · 121,902–127,427 bp · −
trnR-ACC · PZ130064.1 · 128,377–128,450 bp · −
rrn5 · PZ130064.1 · 128,685–128,805 bp · −
rrn4.5 · PZ130064.1 · 129,053–129,155 bp · −
rrn23 · PZ130064.1 · 129,254–132,065 bp · −
trnA-UGC · PZ130064.1 · 132,235–133,125 bp · −
trnI-GAU · PZ130064.1 · 133,191–134,210 bp · −
rrn16 · PZ130064.1 · 134,509–135,999 bp · −
trnV-GAC · PZ130064.1 · 136,226–136,297 bp · −
ycf15 · PZ130064.1 · 142,549–142,746 bp · −
ycf2 · PZ130064.1 · 142,888–149,688 bp · −
psbK · PZ130064.1 · 7,457–7,642 bp · +
psbI · PZ130064.1 · 8,032–8,142 bp · +
trnG-CGA · PZ130064.1 · 9,132–9,888 bp · +
trnR-UCU · PZ130064.1 · 10,063–10,134 bp · +
trnC-GCA · PZ130064.1 · 28,269–28,339 bp · +
petN · PZ130064.1 · 29,057–29,146 bp · +
trnT-GGU · PZ130064.1 · 31,780–31,852 bp · +
psbD · PZ130064.1 · 33,157–34,218 bp · +
psbC · PZ130064.1 · 34,166–35,587 bp · +
psbZ · PZ130064.1 · 36,230–36,418 bp · +
trnG-GCC · PZ130064.1 · 36,695–36,765 bp · +
trnS-GGA · PZ130064.1 · 45,560–45,646 bp · +
trnL-UAA · PZ130064.1 · 47,622–48,182 bp · +
trnF-GAA · PZ130064.1 · 48,483–48,555 bp · +
trnM-CAU · PZ130064.1 · 52,708–52,780 bp · +
rbcL · PZ130064.1 · 55,641–57,083 bp · +
accD · PZ130064.1 · 57,797–59,275 bp · +
psaI · PZ130064.1 · 59,982–60,092 bp · +
ycf4 · PZ130064.1 · 60,526–61,080 bp · +
cemA · PZ130064.1 · 61,829–62,428 bp · +
petA · PZ130064.1 · 62,635–63,597 bp · +
petL · PZ130064.1 · 66,265–66,360 bp · +
petG · PZ130064.1 · 66,536–66,649 bp · +
psaJ · PZ130064.1 · 67,356–67,490 bp · +
rpl33 · PZ130064.1 · 67,966–68,166 bp · +
rps18 · PZ130064.1 · 68,341–68,646 bp · +
rps12 · PZ130064.1 · 137,866–138,659 bp · +
psbB · PZ130064.1 · 72,697–74,223 bp · +
psbT · PZ130064.1 · 74,415–74,522 bp · +
psbH · PZ130064.1 · 74,818–75,039 bp · +
petB · PZ130064.1 · 75,164–76,534 bp · +
petD · PZ130064.1 · 76,717–77,923 bp · +
ycf2 · PZ130064.1 · 86,296–93,096 bp · +
ycf15 · PZ130064.1 · 93,238–93,435 bp · +
trnV-GAC · PZ130064.1 · 99,687–99,758 bp · +
rrn16 · PZ130064.1 · 99,985–101,475 bp · +
trnI-GAU · PZ130064.1 · 101,774–102,793 bp · +
trnA-UGC · PZ130064.1 · 102,859–103,749 bp · +
rrn23 · PZ130064.1 · 103,919–106,730 bp · +
rrn4.5 · PZ130064.1 · 106,829–106,931 bp · +
rrn5 · PZ130064.1 · 107,179–107,299 bp · +
trnR-ACG · PZ130064.1 · 107,534–107,607 bp · +
ycf1 · PZ130064.1 · 108,557–109,411 bp · +
rpl32 · PZ130064.1 · 111,874–112,050 bp · +
trnL-UAG · PZ130064.1 · 112,496–112,575 bp · +
ccsA · PZ130064.1 · 112,664–113,638 bp · +
trnN-GUU · PZ130064.1 · 127,757–127,828 bp · +
rps7 · PZ130064.1 · 138,713–139,180 bp · +
ndhB · PZ130064.1 · 139,455–141,666 bp · +
trnL-CAA · PZ130064.1 · 142,209–142,289 bp · +
trnI-CAU · PZ130064.1 · 149,777–149,850 bp · +
rpl23 · PZ130064.1 · 150,010–150,291 bp · +
rpl2 · PZ130064.1 · 150,310–151,791 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria colpodea
ANNOTATED PLASTOME
PZ130064.1
151,891 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37973 75946 113918 151891 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4251 2574 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5158 6315 1158 Locate
trnQ-UUC gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8262 8349 88 Locate
trnG-CGA gene + 9132 9888 757 Locate
trnR-UCU gene + 10063 10134 72 Locate
atpA gene − 10231 11754 1524 Locate
atpF gene − 11836 13065 1230 Locate
atpH gene − 13426 13671 246 Locate
atpI gene − 14659 15402 744 Locate
rps2 gene − 15748 16458 711 Locate
rpoC2 gene − 16673 20878 4206 Locate
rpoC1 gene − 21033 23869 2837 Locate
rpoB gene − 23896 27108 3213 Locate
trnC-GCA gene + 28269 28339 71 Locate
petN gene + 29057 29146 90 Locate
psbM gene − 30165 30269 105 Locate
trnD-GUC gene − 30795 30868 74 Locate
trnY-GUA gene − 30982 31065 84 Locate
trnE-UUC gene − 31125 31197 73 Locate
trnT-GGU gene + 31780 31852 73 Locate
psbD gene + 33157 34218 1062 Locate
psbC gene + 34166 35587 1422 Locate
trnS-UCA gene − 35822 35914 93 Locate
psbZ gene + 36230 36418 189 Locate
trnG-GCC gene + 36695 36765 71 Locate
trnfM-GAU gene − 36912 36985 74 Locate
rps14 gene − 37140 37442 303 Locate
psaB gene − 37571 39775 2205 Locate
psaA gene − 39801 42053 2253 Locate
ycf3 gene − 42750 44670 1921 Locate
trnS-GGA gene + 45560 45646 87 Locate
rps4 gene − 45922 46527 606 Locate
trnT-UGU gene − 46874 46946 73 Locate
trnL-UAA gene + 47622 48182 561 Locate
trnF-GAA gene + 48483 48555 73 Locate
ndhJ gene − 49203 49679 477 Locate
ndhK gene − 49788 50465 678 Locate
ndhC gene − 50519 50881 363 Locate
trnV-UAC gene − 51867 52519 653 Locate
trnM-CAU gene + 52708 52780 73 Locate
atpE gene − 52974 53375 402 Locate
atpB gene − 53372 54868 1497 Locate
rbcL gene + 55641 57083 1443 Locate
accD gene + 57797 59275 1479 Locate
psaI gene + 59982 60092 111 Locate
ycf4 gene + 60526 61080 555 Locate
cemA gene + 61829 62428 600 Locate
petA gene + 62635 63597 963 Locate
pabJ gene − 64606 64728 123 Locate
psbL gene − 64862 64978 117 Locate
psbF gene − 65002 65121 120 Locate
psbE gene − 65136 65387 252 Locate
petL gene + 66265 66360 96 Locate
petG gene + 66536 66649 114 Locate
trnW-CCA gene − 66768 66841 74 Locate
trnP-UGG gene − 67011 67084 74 Locate
psaJ gene + 67356 67490 135 Locate
rpl33 gene + 67966 68166 201 Locate
rps18 gene + 68341 68646 306 Locate
rpl20 gene − 68881 69267 387 Locate
rps12 gene − 70062 70175 114 Locate
clpP gene − 70317 72245 1929 Locate
psbB gene + 72697 74223 1527 Locate
psbT gene + 74415 74522 108 Locate
psbN gene − 74583 74714 132 Locate
psbH gene + 74818 75039 222 Locate
petB gene + 75164 76534 1371 Locate
petD gene + 76717 77923 1207 Locate
rpoA gene − 78278 79078 801 Locate
rps11 gene − 79150 79566 417 Locate
rps36 gene − 79668 79781 114 Locate
infA gene − 79876 80109 234 Locate
rps8 gene − 80233 80643 411 Locate
rpl14 gene − 80797 81165 369 Locate
rpl16 gene − 81292 82525 1234 Locate
rps3 gene − 82681 83343 663 Locate
rpl22 gene − 83345 83800 456 Locate
rps19 gene − 83860 84138 279 Locate
rpl2 gene − 84193 85674 1482 Locate
rpl23 gene − 85693 85974 282 Locate
trnI-GAU gene − 86134 86207 74 Locate
ycf2 gene + 86296 93096 6801 Locate
ycf15 gene + 93238 93435 198 Locate
trnL-CAA gene − 93695 93775 81 Locate
ndhB gene − 94318 96529 2212 Locate
rps7 gene − 96804 97271 468 Locate
rps12 gene − 97325 98118 794 Locate
trnV-GAC gene + 99687 99758 72 Locate
rrn16 gene + 99985 101475 1491 Locate
trnI-GAU gene + 101774 102793 1020 Locate
trnA-UGC gene + 102859 103749 891 Locate
rrn23 gene + 103919 106730 2812 Locate
rrn4.5 gene + 106829 106931 103 Locate
rrn5 gene + 107179 107299 121 Locate
trnR-ACG gene + 107534 107607 74 Locate
trnN-GUU gene − 108156 108227 72 Locate
ycf1 gene + 108557 109411 855 Locate
ndhF gene − 109284 111545 2262 Locate
rpl32 gene + 111874 112050 177 Locate
trnL-UAG gene + 112496 112575 80 Locate
ccsA gene + 112664 113638 975 Locate
ndhD gene − 113895 115424 1530 Locate
psaC gene − 115525 115770 246 Locate
ndhE gene − 116026 116331 306 Locate
ndhG gene − 116548 117078 531 Locate
ndhI gene − 117445 117945 501 Locate
ndhA gene − 118031 120152 2122 Locate
ndhH gene − 120154 121335 1182 Locate
rps15 gene − 121432 121704 273 Locate
ycf1 gene − 121902 127427 5526 Locate
trnN-GUU gene + 127757 127828 72 Locate
trnR-ACC gene − 128377 128450 74 Locate
rrn5 gene − 128685 128805 121 Locate
rrn4.5 gene − 129053 129155 103 Locate
rrn23 gene − 129254 132065 2812 Locate
trnA-UGC gene − 132235 133125 891 Locate
trnI-GAU gene − 133191 134210 1020 Locate
rrn16 gene − 134509 135999 1491 Locate
trnV-GAC gene − 136226 136297 72 Locate
rps12 gene + 137866 138659 794 Locate
rps7 gene + 138713 139180 468 Locate
ndhB gene + 139455 141666 2212 Locate
trnL-CAA gene + 142209 142289 81 Locate
ycf15 gene − 142549 142746 198 Locate
ycf2 gene − 142888 149688 6801 Locate
trnI-CAU gene + 149777 149850 74 Locate
rpl23 gene + 150010 150291 282 Locate
rpl2 gene + 150310 151791 1482 Locate
Status Available
Accession PZ130064.1
Length 151,891 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources