Scutellaria glabrata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130067.1 · 4–77 bp · −
psbA · PZ130067.1 · 374–1,432 bp · −
trnK-UUU · PZ130067.1 · 1,678–4,251 bp · −
matK · PZ130067.1 · 1,964–3,490 bp · −
rps16 · PZ130067.1 · 5,152–6,310 bp · −
trnQ-UUC · PZ130067.1 · 7,050–7,121 bp · −
trnS-GCU · PZ130067.1 · 8,249–8,336 bp · −
atpA · PZ130067.1 · 10,135–11,658 bp · −
atpF · PZ130067.1 · 11,740–12,969 bp · −
atpH · PZ130067.1 · 13,326–13,571 bp · −
atpI · PZ130067.1 · 14,559–15,302 bp · −
rps2 · PZ130067.1 · 15,648–16,358 bp · −
rpoC2 · PZ130067.1 · 16,573–20,778 bp · −
rpoC1 · PZ130067.1 · 20,933–23,754 bp · −
rpoB · PZ130067.1 · 23,781–27,008 bp · −
psbM · PZ130067.1 · 30,075–30,179 bp · −
trnD-GUC · PZ130067.1 · 30,705–30,778 bp · −
trnY-GUA · PZ130067.1 · 30,892–30,975 bp · −
trnE-UUC · PZ130067.1 · 31,035–31,107 bp · −
trnS-UCA · PZ130067.1 · 35,725–35,817 bp · −
trnfM-GAU · PZ130067.1 · 36,813–36,886 bp · −
rps14 · PZ130067.1 · 37,041–37,343 bp · −
psaB · PZ130067.1 · 37,472–39,676 bp · −
psaA · PZ130067.1 · 39,702–41,954 bp · −
ycf3 · PZ130067.1 · 42,647–44,569 bp · −
rps4 · PZ130067.1 · 45,814–46,419 bp · −
trnT-UGU · PZ130067.1 · 46,764–46,836 bp · −
ndhJ · PZ130067.1 · 49,092–49,568 bp · −
ndhK · PZ130067.1 · 49,677–50,354 bp · −
ndhC · PZ130067.1 · 50,407–50,769 bp · −
trnV-UAC · PZ130067.1 · 51,755–52,407 bp · −
atpE · PZ130067.1 · 52,862–53,263 bp · −
atpB · PZ130067.1 · 53,260–54,756 bp · −
pabJ · PZ130067.1 · 64,483–64,605 bp · −
psbL · PZ130067.1 · 64,739–64,855 bp · −
psbF · PZ130067.1 · 64,879–64,998 bp · −
psbE · PZ130067.1 · 65,013–65,264 bp · −
trnW-CCA · PZ130067.1 · 66,644–66,717 bp · −
trnP-UGG · PZ130067.1 · 66,887–66,960 bp · −
rpl20 · PZ130067.1 · 68,757–69,143 bp · −
rps12 · PZ130067.1 · 69,938–70,051 bp · −
rps12 · PZ130067.1 · 97,199–97,992 bp · −
clpP · PZ130067.1 · 70,193–72,121 bp · −
psbN · PZ130067.1 · 74,460–74,591 bp · −
rpoA · PZ130067.1 · 78,153–78,953 bp · −
rps11 · PZ130067.1 · 79,025–79,441 bp · −
rps36 · PZ130067.1 · 79,543–79,656 bp · −
infA · PZ130067.1 · 79,751–79,984 bp · −
rps8 · PZ130067.1 · 80,108–80,518 bp · −
rpl14 · PZ130067.1 · 80,671–81,039 bp · −
rpl16 · PZ130067.1 · 81,166–82,399 bp · −
rps3 · PZ130067.1 · 82,555–83,217 bp · −
rpl22 · PZ130067.1 · 83,219–83,674 bp · −
rps19 · PZ130067.1 · 83,734–84,012 bp · −
rpl2 · PZ130067.1 · 84,067–85,548 bp · −
rpl23 · PZ130067.1 · 85,567–85,848 bp · −
trnI-GAU · PZ130067.1 · 86,008–86,081 bp · −
trnL-CAA · PZ130067.1 · 93,569–93,649 bp · −
ndhB · PZ130067.1 · 94,192–96,403 bp · −
rps7 · PZ130067.1 · 96,678–97,145 bp · −
trnN-GUU · PZ130067.1 · 108,029–108,100 bp · −
ndhF · PZ130067.1 · 109,157–111,418 bp · −
ndhD · PZ130067.1 · 113,781–115,310 bp · −
psaC · PZ130067.1 · 115,412–115,657 bp · −
ndhE · PZ130067.1 · 115,913–116,218 bp · −
ndhG · PZ130067.1 · 116,435–116,965 bp · −
ndhI · PZ130067.1 · 117,332–117,832 bp · −
ndhA · PZ130067.1 · 117,918–120,039 bp · −
ndhH · PZ130067.1 · 120,041–121,222 bp · −
rps15 · PZ130067.1 · 121,319–121,591 bp · −
ycf1 · PZ130067.1 · 121,789–127,308 bp · −
trnR-ACC · PZ130067.1 · 128,258–128,331 bp · −
rrn5 · PZ130067.1 · 128,566–128,686 bp · −
rrn4.5 · PZ130067.1 · 128,934–129,036 bp · −
rrn23 · PZ130067.1 · 129,135–131,946 bp · −
trnA-UGC · PZ130067.1 · 132,116–133,005 bp · −
trnI-GAU · PZ130067.1 · 133,071–134,090 bp · −
rrn16 · PZ130067.1 · 134,389–135,879 bp · −
trnV-GAC · PZ130067.1 · 136,106–136,177 bp · −
ycf15 · PZ130067.1 · 142,429–142,626 bp · −
ycf2 · PZ130067.1 · 142,768–149,568 bp · −
psbK · PZ130067.1 · 7,446–7,631 bp · +
psbI · PZ130067.1 · 8,021–8,131 bp · +
trnG-CGA · PZ130067.1 · 9,036–9,792 bp · +
trnR-UCU · PZ130067.1 · 9,967–10,038 bp · +
trnC-GCA · PZ130067.1 · 28,146–28,216 bp · +
petN · PZ130067.1 · 28,930–29,019 bp · +
trnT-GGU · PZ130067.1 · 31,683–31,754 bp · +
psbD · PZ130067.1 · 33,059–34,120 bp · +
psbC · PZ130067.1 · 34,068–35,489 bp · +
psbZ · PZ130067.1 · 36,133–36,321 bp · +
trnG-GCC · PZ130067.1 · 36,596–36,666 bp · +
trnS-GGA · PZ130067.1 · 45,452–45,538 bp · +
trnL-UAA · PZ130067.1 · 47,517–48,077 bp · +
trnF-GAA · PZ130067.1 · 48,380–48,452 bp · +
trnM-CAU · PZ130067.1 · 52,596–52,668 bp · +
rbcL · PZ130067.1 · 55,528–56,970 bp · +
accD · PZ130067.1 · 57,684–59,162 bp · +
psaI · PZ130067.1 · 59,869–59,979 bp · +
ycf4 · PZ130067.1 · 60,405–60,959 bp · +
cemA · PZ130067.1 · 61,708–62,307 bp · +
petA · PZ130067.1 · 62,514–63,476 bp · +
petL · PZ130067.1 · 66,141–66,236 bp · +
petG · PZ130067.1 · 66,412–66,525 bp · +
psaJ · PZ130067.1 · 67,232–67,366 bp · +
rpl33 · PZ130067.1 · 67,842–68,042 bp · +
rps18 · PZ130067.1 · 68,217–68,522 bp · +
rps12 · PZ130067.1 · 137,746–138,539 bp · +
psbB · PZ130067.1 · 72,573–74,099 bp · +
psbT · PZ130067.1 · 74,292–74,399 bp · +
psbH · PZ130067.1 · 74,695–74,916 bp · +
petB · PZ130067.1 · 75,041–76,409 bp · +
petD · PZ130067.1 · 76,592–77,798 bp · +
ycf2 · PZ130067.1 · 86,170–92,970 bp · +
ycf15 · PZ130067.1 · 93,112–93,309 bp · +
trnV-GAC · PZ130067.1 · 99,561–99,632 bp · +
rrn16 · PZ130067.1 · 99,859–101,349 bp · +
trnI-GAU · PZ130067.1 · 101,648–102,667 bp · +
trnA-UGC · PZ130067.1 · 102,733–103,622 bp · +
rrn23 · PZ130067.1 · 103,792–106,603 bp · +
rrn4.5 · PZ130067.1 · 106,702–106,804 bp · +
rrn5 · PZ130067.1 · 107,052–107,172 bp · +
trnR-ACG · PZ130067.1 · 107,407–107,480 bp · +
ycf1 · PZ130067.1 · 108,430–109,284 bp · +
rpl32 · PZ130067.1 · 111,746–111,922 bp · +
trnL-UAG · PZ130067.1 · 112,369–112,448 bp · +
ccsA · PZ130067.1 · 112,550–113,524 bp · +
trnN-GUU · PZ130067.1 · 127,638–127,709 bp · +
rps7 · PZ130067.1 · 138,593–139,060 bp · +
ndhB · PZ130067.1 · 139,335–141,546 bp · +
trnL-CAA · PZ130067.1 · 142,089–142,169 bp · +
trnI-CAU · PZ130067.1 · 149,657–149,730 bp · +
rpl23 · PZ130067.1 · 149,890–150,171 bp · +
rpl2 · PZ130067.1 · 150,190–151,671 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria glabrata
ANNOTATED PLASTOME
PZ130067.1
151,771 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37943 75886 113828 151771 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4251 2574 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5152 6310 1159 Locate
trnQ-UUC gene − 7050 7121 72 Locate
psbK gene + 7446 7631 186 Locate
psbI gene + 8021 8131 111 Locate
trnS-GCU gene − 8249 8336 88 Locate
trnG-CGA gene + 9036 9792 757 Locate
trnR-UCU gene + 9967 10038 72 Locate
atpA gene − 10135 11658 1524 Locate
atpF gene − 11740 12969 1230 Locate
atpH gene − 13326 13571 246 Locate
atpI gene − 14559 15302 744 Locate
rps2 gene − 15648 16358 711 Locate
rpoC2 gene − 16573 20778 4206 Locate
rpoC1 gene − 20933 23754 2822 Locate
rpoB gene − 23781 27008 3228 Locate
trnC-GCA gene + 28146 28216 71 Locate
petN gene + 28930 29019 90 Locate
psbM gene − 30075 30179 105 Locate
trnD-GUC gene − 30705 30778 74 Locate
trnY-GUA gene − 30892 30975 84 Locate
trnE-UUC gene − 31035 31107 73 Locate
trnT-GGU gene + 31683 31754 72 Locate
psbD gene + 33059 34120 1062 Locate
psbC gene + 34068 35489 1422 Locate
trnS-UCA gene − 35725 35817 93 Locate
psbZ gene + 36133 36321 189 Locate
trnG-GCC gene + 36596 36666 71 Locate
trnfM-GAU gene − 36813 36886 74 Locate
rps14 gene − 37041 37343 303 Locate
psaB gene − 37472 39676 2205 Locate
psaA gene − 39702 41954 2253 Locate
ycf3 gene − 42647 44569 1923 Locate
trnS-GGA gene + 45452 45538 87 Locate
rps4 gene − 45814 46419 606 Locate
trnT-UGU gene − 46764 46836 73 Locate
trnL-UAA gene + 47517 48077 561 Locate
trnF-GAA gene + 48380 48452 73 Locate
ndhJ gene − 49092 49568 477 Locate
ndhK gene − 49677 50354 678 Locate
ndhC gene − 50407 50769 363 Locate
trnV-UAC gene − 51755 52407 653 Locate
trnM-CAU gene + 52596 52668 73 Locate
atpE gene − 52862 53263 402 Locate
atpB gene − 53260 54756 1497 Locate
rbcL gene + 55528 56970 1443 Locate
accD gene + 57684 59162 1479 Locate
psaI gene + 59869 59979 111 Locate
ycf4 gene + 60405 60959 555 Locate
cemA gene + 61708 62307 600 Locate
petA gene + 62514 63476 963 Locate
pabJ gene − 64483 64605 123 Locate
psbL gene − 64739 64855 117 Locate
psbF gene − 64879 64998 120 Locate
psbE gene − 65013 65264 252 Locate
petL gene + 66141 66236 96 Locate
petG gene + 66412 66525 114 Locate
trnW-CCA gene − 66644 66717 74 Locate
trnP-UGG gene − 66887 66960 74 Locate
psaJ gene + 67232 67366 135 Locate
rpl33 gene + 67842 68042 201 Locate
rps18 gene + 68217 68522 306 Locate
rpl20 gene − 68757 69143 387 Locate
rps12 gene − 69938 70051 114 Locate
clpP gene − 70193 72121 1929 Locate
psbB gene + 72573 74099 1527 Locate
psbT gene + 74292 74399 108 Locate
psbN gene − 74460 74591 132 Locate
psbH gene + 74695 74916 222 Locate
petB gene + 75041 76409 1369 Locate
petD gene + 76592 77798 1207 Locate
rpoA gene − 78153 78953 801 Locate
rps11 gene − 79025 79441 417 Locate
rps36 gene − 79543 79656 114 Locate
infA gene − 79751 79984 234 Locate
rps8 gene − 80108 80518 411 Locate
rpl14 gene − 80671 81039 369 Locate
rpl16 gene − 81166 82399 1234 Locate
rps3 gene − 82555 83217 663 Locate
rpl22 gene − 83219 83674 456 Locate
rps19 gene − 83734 84012 279 Locate
rpl2 gene − 84067 85548 1482 Locate
rpl23 gene − 85567 85848 282 Locate
trnI-GAU gene − 86008 86081 74 Locate
ycf2 gene + 86170 92970 6801 Locate
ycf15 gene + 93112 93309 198 Locate
trnL-CAA gene − 93569 93649 81 Locate
ndhB gene − 94192 96403 2212 Locate
rps7 gene − 96678 97145 468 Locate
rps12 gene − 97199 97992 794 Locate
trnV-GAC gene + 99561 99632 72 Locate
rrn16 gene + 99859 101349 1491 Locate
trnI-GAU gene + 101648 102667 1020 Locate
trnA-UGC gene + 102733 103622 890 Locate
rrn23 gene + 103792 106603 2812 Locate
rrn4.5 gene + 106702 106804 103 Locate
rrn5 gene + 107052 107172 121 Locate
trnR-ACG gene + 107407 107480 74 Locate
trnN-GUU gene − 108029 108100 72 Locate
ycf1 gene + 108430 109284 855 Locate
ndhF gene − 109157 111418 2262 Locate
rpl32 gene + 111746 111922 177 Locate
trnL-UAG gene + 112369 112448 80 Locate
ccsA gene + 112550 113524 975 Locate
ndhD gene − 113781 115310 1530 Locate
psaC gene − 115412 115657 246 Locate
ndhE gene − 115913 116218 306 Locate
ndhG gene − 116435 116965 531 Locate
ndhI gene − 117332 117832 501 Locate
ndhA gene − 117918 120039 2122 Locate
ndhH gene − 120041 121222 1182 Locate
rps15 gene − 121319 121591 273 Locate
ycf1 gene − 121789 127308 5520 Locate
trnN-GUU gene + 127638 127709 72 Locate
trnR-ACC gene − 128258 128331 74 Locate
rrn5 gene − 128566 128686 121 Locate
rrn4.5 gene − 128934 129036 103 Locate
rrn23 gene − 129135 131946 2812 Locate
trnA-UGC gene − 132116 133005 890 Locate
trnI-GAU gene − 133071 134090 1020 Locate
rrn16 gene − 134389 135879 1491 Locate
trnV-GAC gene − 136106 136177 72 Locate
rps12 gene + 137746 138539 794 Locate
rps7 gene + 138593 139060 468 Locate
ndhB gene + 139335 141546 2212 Locate
trnL-CAA gene + 142089 142169 81 Locate
ycf15 gene − 142429 142626 198 Locate
ycf2 gene − 142768 149568 6801 Locate
trnI-CAU gene + 149657 149730 74 Locate
rpl23 gene + 149890 150171 282 Locate
rpl2 gene + 150190 151671 1482 Locate
Status Available
Accession PZ130067.1
Length 151,771 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources