Scutellaria hypericifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MW286270.1 · 1–73 bp · −
psbA · MW286270.1 · 376–1,434 bp · −
trnK-UUU · MW286270.1 · 1,675–4,262 bp · −
matK · MW286270.1 · 1,966–3,501 bp · −
rps16 · MW286270.1 · 5,156–6,326 bp · −
trnQ-UUG · MW286270.1 · 7,402–7,473 bp · −
trnS-GCU · MW286270.1 · 8,595–8,682 bp · −
atpA · MW286270.1 · 10,406–11,929 bp · −
atpF · MW286270.1 · 12,012–13,240 bp · −
atpH · MW286270.1 · 13,611–13,856 bp · −
atpI · MW286270.1 · 14,845–15,588 bp · −
rps2 · MW286270.1 · 15,942–16,652 bp · −
rpoC2 · MW286270.1 · 16,866–21,071 bp · −
rpoC1 · MW286270.1 · 21,226–24,049 bp · −
rpoB · MW286270.1 · 24,076–27,288 bp · −
psbM · MW286270.1 · 29,902–30,006 bp · −
trnD-GUC · MW286270.1 · 30,533–30,606 bp · −
trnY-GUA · MW286270.1 · 30,725–30,808 bp · −
trnE-UUC · MW286270.1 · 30,868–30,940 bp · −
trnS-UGA · MW286270.1 · 35,416–35,508 bp · −
trnM-CAU · MW286270.1 · 36,503–36,576 bp · −
rps14 · MW286270.1 · 36,731–37,033 bp · −
psaB · MW286270.1 · 37,161–39,365 bp · −
psaA · MW286270.1 · 39,391–41,643 bp · −
ycf3 · MW286270.1 · 42,331–44,255 bp · −
rps4 · MW286270.1 · 45,515–46,120 bp · −
trnT-UGU · MW286270.1 · 46,461–46,533 bp · −
ndhJ · MW286270.1 · 48,832–49,308 bp · −
ndhK · MW286270.1 · 49,417–50,094 bp · −
ndhC · MW286270.1 · 50,147–50,509 bp · −
atpE · MW286270.1 · 52,614–53,015 bp · −
atpB · MW286270.1 · 53,012–54,508 bp · −
psbJ · MW286270.1 · 64,237–64,359 bp · −
psbL · MW286270.1 · 64,493–64,609 bp · −
psbF · MW286270.1 · 64,633–64,752 bp · −
psbE · MW286270.1 · 64,767–65,018 bp · −
trnW-CCA · MW286270.1 · 66,399–66,472 bp · −
trnP-UGG · MW286270.1 · 66,642–66,715 bp · −
rpl20 · MW286270.1 · 68,509–68,895 bp · −
rps12 · MW286270.1 · 69,693–69,806 bp · −
rps12 · MW286270.1 · 97,535–97,777 bp · −
clpP · MW286270.1 · 69,941–71,879 bp · −
psbN · MW286270.1 · 74,223–74,354 bp · −
rpoA · MW286270.1 · 77,874–78,725 bp · −
rps11 · MW286270.1 · 78,797–79,213 bp · −
rpl36 · MW286270.1 · 79,315–79,428 bp · −
infA · MW286270.1 · 79,523–79,756 bp · −
rps8 · MW286270.1 · 79,881–80,291 bp · −
rpl14 · MW286270.1 · 80,454–80,822 bp · −
rpl16 · MW286270.1 · 80,949–82,180 bp · −
rps3 · MW286270.1 · 82,337–83,005 bp · −
rpl22 · MW286270.1 · 83,007–83,462 bp · −
rps19 · MW286270.1 · 83,522–83,746 bp · −
rpl2 · MW286270.1 · 83,855–85,336 bp · −
rpl23 · MW286270.1 · 85,355–85,636 bp · −
trnM-CAU · MW286270.1 · 85,796–85,869 bp · −
trnL-CAA · MW286270.1 · 93,354–93,434 bp · −
ndhB · MW286270.1 · 93,977–96,188 bp · −
rps7 · MW286270.1 · 96,463–96,930 bp · −
trnN-GUU · MW286270.1 · 107,823–107,894 bp · −
ndhF · MW286270.1 · 108,971–111,205 bp · −
ndhD · MW286270.1 · 113,560–115,089 bp · −
psaC · MW286270.1 · 115,189–115,434 bp · −
ndhE · MW286270.1 · 115,690–115,995 bp · −
ndhG · MW286270.1 · 116,218–116,748 bp · −
ndhI · MW286270.1 · 117,044–117,610 bp · −
ndhA · MW286270.1 · 117,691–119,798 bp · −
ndhH · MW286270.1 · 119,800–120,981 bp · −
rps15 · MW286270.1 · 121,078–121,410 bp · −
ycf1 · MW286270.1 · 121,547–127,093 bp · −
trnR-ACG · MW286270.1 · 128,051–128,124 bp · −
rrn5S · MW286270.1 · 128,349–128,479 bp · −
rrn4.5S · MW286270.1 · 128,606–128,829 bp · −
rrn23S · MW286270.1 · 128,928–131,739 bp · −
trnA-UGC · MW286270.1 · 131,909–132,799 bp · −
trnI · MW286270.1 · 132,864–133,884 bp · −
rrn16S · MW286270.1 · 134,183–135,673 bp · −
trnV-GAC · MW286270.1 · 135,900–135,971 bp · −
ycf15 · MW286270.1 · 142,223–142,420 bp · −
ycf2 · MW286270.1 · 142,562–149,359 bp · −
psbK · MW286270.1 · 7,798–7,983 bp · +
psbI · MW286270.1 · 8,372–8,482 bp · +
trnS-CGA · MW286270.1 · 9,308–10,064 bp · +
trnR-UCU · MW286270.1 · 10,238–10,309 bp · +
trnC-GCA · MW286270.1 · 28,443–28,513 bp · +
petN · MW286270.1 · 28,796–28,885 bp · +
trnT-GGU · MW286270.1 · 31,516–31,587 bp · +
psbD · MW286270.1 · 32,750–33,811 bp · +
psbC · MW286270.1 · 33,759–35,180 bp · +
psbZ · MW286270.1 · 35,824–36,012 bp · +
trnG-GCC · MW286270.1 · 36,287–36,357 bp · +
trnS-GGA · MW286270.1 · 45,147–45,233 bp · +
trnL-UAA · MW286270.1 · 47,237–47,803 bp · +
trnF-GAA · MW286270.1 · 48,112–48,184 bp · +
trnM-CAU · MW286270.1 · 52,333–52,405 bp · +
rbcL · MW286270.1 · 55,272–56,714 bp · +
accD · MW286270.1 · 57,432–58,910 bp · +
psaI · MW286270.1 · 59,623–59,733 bp · +
ycf4 · MW286270.1 · 60,167–60,721 bp · +
cemA · MW286270.1 · 61,465–62,064 bp · +
petA · MW286270.1 · 62,266–63,228 bp · +
petL · MW286270.1 · 65,897–65,992 bp · +
petG · MW286270.1 · 66,167–66,280 bp · +
psaJ · MW286270.1 · 66,986–67,120 bp · +
rpl33 · MW286270.1 · 67,595–67,795 bp · +
rps18 · MW286270.1 · 67,970–68,275 bp · +
rps12 · MW286270.1 · 137,540–137,782 bp · +
psbB · MW286270.1 · 72,337–73,863 bp · +
psbT · MW286270.1 · 74,055–74,162 bp · +
psbH · MW286270.1 · 74,458–74,679 bp · +
petB · MW286270.1 · 74,804–76,164 bp · +
petD · MW286270.1 · 76,353–77,549 bp · +
ycf2 · MW286270.1 · 85,958–92,755 bp · +
ycf15 · MW286270.1 · 92,897–93,094 bp · +
trnV-GAC · MW286270.1 · 99,346–99,417 bp · +
rrn16S · MW286270.1 · 99,644–101,134 bp · +
trnI · MW286270.1 · 101,433–102,453 bp · +
trnA-UGC · MW286270.1 · 102,518–103,408 bp · +
rrn23S · MW286270.1 · 103,578–106,389 bp · +
rrn4.5S · MW286270.1 · 106,488–106,711 bp · +
rrn5S · MW286270.1 · 106,838–106,968 bp · +
trnR-ACG · MW286270.1 · 107,193–107,266 bp · +
rpl32 · MW286270.1 · 111,719–111,895 bp · +
trnL-UAG · MW286270.1 · 112,181–112,260 bp · +
ccsA · MW286270.1 · 112,352–113,326 bp · +
trnN-GUU · MW286270.1 · 127,423–127,494 bp · +
rps7 · MW286270.1 · 138,387–138,854 bp · +
ndhB · MW286270.1 · 139,129–141,340 bp · +
trnL-CAA · MW286270.1 · 141,883–141,963 bp · +
trnM-CAU · MW286270.1 · 149,448–149,521 bp · +
rpl23 · MW286270.1 · 149,681–149,962 bp · +
rpl2 · MW286270.1 · 149,981–151,462 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria hypericifolia
ANNOTATED PLASTOME
MW286270.1
151,574 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37894 75787 113680 151574 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 73 73 Locate
psbA gene − 376 1434 1059 Locate
trnK-UUU gene − 1675 4262 2588 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5156 6326 1171 Locate
trnQ-UUG gene − 7402 7473 72 Locate
psbK gene + 7798 7983 186 Locate
psbI gene + 8372 8482 111 Locate
trnS-GCU gene − 8595 8682 88 Locate
trnS-CGA gene + 9308 10064 757 Locate
trnR-UCU gene + 10238 10309 72 Locate
atpA gene − 10406 11929 1524 Locate
atpF gene − 12012 13240 1229 Locate
atpH gene − 13611 13856 246 Locate
atpI gene − 14845 15588 744 Locate
rps2 gene − 15942 16652 711 Locate
rpoC2 gene − 16866 21071 4206 Locate
rpoC1 gene − 21226 24049 2824 Locate
rpoB gene − 24076 27288 3213 Locate
trnC-GCA gene + 28443 28513 71 Locate
petN gene + 28796 28885 90 Locate
psbM gene − 29902 30006 105 Locate
trnD-GUC gene − 30533 30606 74 Locate
trnY-GUA gene − 30725 30808 84 Locate
trnE-UUC gene − 30868 30940 73 Locate
trnT-GGU gene + 31516 31587 72 Locate
psbD gene + 32750 33811 1062 Locate
psbC gene + 33759 35180 1422 Locate
trnS-UGA gene − 35416 35508 93 Locate
psbZ gene + 35824 36012 189 Locate
trnG-GCC gene + 36287 36357 71 Locate
trnM-CAU gene − 36503 36576 74 Locate
rps14 gene − 36731 37033 303 Locate
psaB gene − 37161 39365 2205 Locate
psaA gene − 39391 41643 2253 Locate
ycf3 gene − 42331 44255 1925 Locate
trnS-GGA gene + 45147 45233 87 Locate
rps4 gene − 45515 46120 606 Locate
trnT-UGU gene − 46461 46533 73 Locate
trnL-UAA gene + 47237 47803 567 Locate
trnF-GAA gene + 48112 48184 73 Locate
ndhJ gene − 48832 49308 477 Locate
ndhK gene − 49417 50094 678 Locate
ndhC gene − 50147 50509 363 Locate
trnM-CAU gene + 52333 52405 73 Locate
atpE gene − 52614 53015 402 Locate
atpB gene − 53012 54508 1497 Locate
rbcL gene + 55272 56714 1443 Locate
accD gene + 57432 58910 1479 Locate
psaI gene + 59623 59733 111 Locate
ycf4 gene + 60167 60721 555 Locate
cemA gene + 61465 62064 600 Locate
petA gene + 62266 63228 963 Locate
psbJ gene − 64237 64359 123 Locate
psbL gene − 64493 64609 117 Locate
psbF gene − 64633 64752 120 Locate
psbE gene − 64767 65018 252 Locate
petL gene + 65897 65992 96 Locate
petG gene + 66167 66280 114 Locate
trnW-CCA gene − 66399 66472 74 Locate
trnP-UGG gene − 66642 66715 74 Locate
psaJ gene + 66986 67120 135 Locate
rpl33 gene + 67595 67795 201 Locate
rps18 gene + 67970 68275 306 Locate
rpl20 gene − 68509 68895 387 Locate
rps12 gene − 69693 69806 114 Locate
clpP gene − 69941 71879 1939 Locate
psbB gene + 72337 73863 1527 Locate
psbT gene + 74055 74162 108 Locate
psbN gene − 74223 74354 132 Locate
psbH gene + 74458 74679 222 Locate
petB gene + 74804 76164 1361 Locate
petD gene + 76353 77549 1197 Locate
rpoA gene − 77874 78725 852 Locate
rps11 gene − 78797 79213 417 Locate
rpl36 gene − 79315 79428 114 Locate
infA gene − 79523 79756 234 Locate
rps8 gene − 79881 80291 411 Locate
rpl14 gene − 80454 80822 369 Locate
rpl16 gene − 80949 82180 1232 Locate
rps3 gene − 82337 83005 669 Locate
rpl22 gene − 83007 83462 456 Locate
rps19 gene − 83522 83746 225 Locate
rpl2 gene − 83855 85336 1482 Locate
rpl23 gene − 85355 85636 282 Locate
trnM-CAU gene − 85796 85869 74 Locate
ycf2 gene + 85958 92755 6798 Locate
ycf15 gene + 92897 93094 198 Locate
trnL-CAA gene − 93354 93434 81 Locate
ndhB gene − 93977 96188 2212 Locate
rps7 gene − 96463 96930 468 Locate
rps12 gene − 97535 97777 243 Locate
trnV-GAC gene + 99346 99417 72 Locate
rrn16S gene + 99644 101134 1491 Locate
trnI gene + 101433 102453 1021 Locate
trnA-UGC gene + 102518 103408 891 Locate
rrn23S gene + 103578 106389 2812 Locate
rrn4.5S gene + 106488 106711 224 Locate
rrn5S gene + 106838 106968 131 Locate
trnR-ACG gene + 107193 107266 74 Locate
trnN-GUU gene − 107823 107894 72 Locate
ndhF gene − 108971 111205 2235 Locate
rpl32 gene + 111719 111895 177 Locate
trnL-UAG gene + 112181 112260 80 Locate
ccsA gene + 112352 113326 975 Locate
ndhD gene − 113560 115089 1530 Locate
psaC gene − 115189 115434 246 Locate
ndhE gene − 115690 115995 306 Locate
ndhG gene − 116218 116748 531 Locate
ndhI gene − 117044 117610 567 Locate
ndhA gene − 117691 119798 2108 Locate
ndhH gene − 119800 120981 1182 Locate
rps15 gene − 121078 121410 333 Locate
ycf1 gene − 121547 127093 5547 Locate
trnN-GUU gene + 127423 127494 72 Locate
trnR-ACG gene − 128051 128124 74 Locate
rrn5S gene − 128349 128479 131 Locate
rrn4.5S gene − 128606 128829 224 Locate
rrn23S gene − 128928 131739 2812 Locate
trnA-UGC gene − 131909 132799 891 Locate
trnI gene − 132864 133884 1021 Locate
rrn16S gene − 134183 135673 1491 Locate
trnV-GAC gene − 135900 135971 72 Locate
rps12 gene + 137540 137782 243 Locate
rps7 gene + 138387 138854 468 Locate
ndhB gene + 139129 141340 2212 Locate
trnL-CAA gene + 141883 141963 81 Locate
ycf15 gene − 142223 142420 198 Locate
ycf2 gene − 142562 149359 6798 Locate
trnM-CAU gene + 149448 149521 74 Locate
rpl23 gene + 149681 149962 282 Locate
rpl2 gene + 149981 151462 1482 Locate
Status Available
Accession MW286270.1
Length 151,574 bp
GC content 38.4%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources