Scutellaria indica var. coccinea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MN047312.1 · 3–76 bp · −
psbA · MN047312.1 · 375–1,433 bp · −
trnK-UUU · MN047312.1 · 1,679–4,259 bp · −
matK · MN047312.1 · 1,970–3,505 bp · −
rps16 · MN047312.1 · 5,128–6,297 bp · −
trnQ-UUC · MN047312.1 · 7,317–7,388 bp · −
trnS-GCU · MN047312.1 · 8,521–8,608 bp · −
atpA · MN047312.1 · 10,392–11,915 bp · −
atpF · MN047312.1 · 11,998–13,225 bp · −
atpH · MN047312.1 · 13,582–13,827 bp · −
atpI · MN047312.1 · 14,823–15,566 bp · −
rps2 · MN047312.1 · 15,915–16,625 bp · −
rpoC2 · MN047312.1 · 16,842–21,047 bp · −
rpoC1 · MN047312.1 · 21,202–24,031 bp · −
rpoB · MN047312.1 · 24,058–27,270 bp · −
psbM · MN047312.1 · 30,293–30,397 bp · −
trnD-GUC · MN047312.1 · 30,924–30,997 bp · −
trnY-GUA · MN047312.1 · 31,111–31,194 bp · −
trnE-UUC · MN047312.1 · 31,254–31,326 bp · −
trnS-UCA · MN047312.1 · 35,842–35,934 bp · −
trnfM-GAU · MN047312.1 · 36,938–37,011 bp · −
rps14 · MN047312.1 · 37,161–37,463 bp · −
psaB · MN047312.1 · 37,591–39,795 bp · −
psaA · MN047312.1 · 39,821–42,073 bp · −
ycf3 · MN047312.1 · 42,760–44,681 bp · −
rps4 · MN047312.1 · 45,941–46,546 bp · −
trnT-UGU · MN047312.1 · 46,888–46,960 bp · −
ndhJ · MN047312.1 · 49,234–49,710 bp · −
ndhK · MN047312.1 · 49,818–50,495 bp · −
ndhC · MN047312.1 · 50,548–50,910 bp · −
trnV-UAC · MN047312.1 · 51,766–52,418 bp · −
atpE · MN047312.1 · 52,887–53,288 bp · −
atpB · MN047312.1 · 53,285–54,772 bp · −
pabJ · MN047312.1 · 64,376–64,498 bp · −
psbL · MN047312.1 · 64,632–64,748 bp · −
psbF · MN047312.1 · 64,772–64,891 bp · −
psbE · MN047312.1 · 64,906–65,157 bp · −
trnW-CCA · MN047312.1 · 66,569–66,642 bp · −
trnP-UGG · MN047312.1 · 66,812–66,885 bp · −
rpl20 · MN047312.1 · 68,683–69,069 bp · −
rps12 · MN047312.1 · 69,869–69,982 bp · −
rps12 · MN047312.1 · 97,736–97,978 bp · −
clpP · MN047312.1 · 70,125–72,057 bp · −
psbN · MN047312.1 · 74,417–74,548 bp · −
rpoA · MN047312.1 · 77,918–78,931 bp · −
rps11 · MN047312.1 · 79,003–79,419 bp · −
rps36 · MN047312.1 · 79,521–79,634 bp · −
infA · MN047312.1 · 79,730–79,963 bp · −
rps8 · MN047312.1 · 80,083–80,493 bp · −
rpl14 · MN047312.1 · 80,662–81,030 bp · −
rpl16 · MN047312.1 · 81,158–82,380 bp · −
rps3 · MN047312.1 · 82,535–83,197 bp · −
rpl22 · MN047312.1 · 83,199–83,654 bp · −
rps19 · MN047312.1 · 83,714–83,992 bp · −
rpl2 · MN047312.1 · 84,047–85,529 bp · −
rpl23 · MN047312.1 · 85,548–85,829 bp · −
trnI-GAU · MN047312.1 · 85,989–86,062 bp · −
trnL-CAA · MN047312.1 · 93,555–93,635 bp · −
ndhB · MN047312.1 · 94,178–96,389 bp · −
rps7 · MN047312.1 · 96,664–97,131 bp · −
ndhF · MN047312.1 · 109,154–111,394 bp · −
ndhD · MN047312.1 · 113,920–115,425 bp · −
psaC · MN047312.1 · 115,542–115,787 bp · −
ndhE · MN047312.1 · 116,044–116,349 bp · −
ndhG · MN047312.1 · 116,580–117,110 bp · −
ndhI · MN047312.1 · 117,475–117,975 bp · −
ndhA · MN047312.1 · 118,056–120,151 bp · −
ndhH · MN047312.1 · 120,153–121,334 bp · −
rps15 · MN047312.1 · 121,437–121,709 bp · −
ycf1 · MN047312.1 · 121,976–127,501 bp · −
trnR-ACC · MN047312.1 · 128,449–128,522 bp · −
rrn5 · MN047312.1 · 128,757–128,877 bp · −
rrn4.5 · MN047312.1 · 129,125–129,227 bp · −
rrn23 · MN047312.1 · 129,326–132,138 bp · −
trnA-UGC · MN047312.1 · 132,308–133,190 bp · −
trnI-GAU · MN047312.1 · 133,256–134,275 bp · −
rrn16 · MN047312.1 · 134,574–136,064 bp · −
trnV-GAC · MN047312.1 · 136,292–136,363 bp · −
ycf15 · MN047312.1 · 142,609–142,857 bp · −
ycf2 · MN047312.1 · 142,948–149,757 bp · −
psbK · MN047312.1 · 7,713–7,898 bp · +
psbI · MN047312.1 · 8,292–8,402 bp · +
trnG-CGA · MN047312.1 · 9,293–10,053 bp · +
trnR-UCU · MN047312.1 · 10,224–10,295 bp · +
trnC-GCA · MN047312.1 · 28,429–28,499 bp · +
petN · MN047312.1 · 29,211–29,300 bp · +
trnT-GGU · MN047312.1 · 31,799–31,870 bp · +
psbD · MN047312.1 · 33,177–34,238 bp · +
psbC · MN047312.1 · 34,186–35,607 bp · +
psbZ · MN047312.1 · 36,254–36,442 bp · +
trnG-GCC · MN047312.1 · 36,714–36,784 bp · +
trnS-GGA · MN047312.1 · 45,569–45,655 bp · +
trnL-UAA · MN047312.1 · 47,645–48,207 bp · +
trnF-GAA · MN047312.1 · 48,513–48,585 bp · +
trnM-CAU · MN047312.1 · 52,599–52,671 bp · +
rbcL · MN047312.1 · 55,545–56,987 bp · +
accD · MN047312.1 · 57,721–59,187 bp · +
psaI · MN047312.1 · 59,745–59,855 bp · +
ycf4 · MN047312.1 · 60,281–60,835 bp · +
cemA · MN047312.1 · 61,484–62,173 bp · +
petA · MN047312.1 · 62,380–63,342 bp · +
petL · MN047312.1 · 66,066–66,161 bp · +
petG · MN047312.1 · 66,337–66,450 bp · +
psaJ · MN047312.1 · 67,158–67,292 bp · +
rpl33 · MN047312.1 · 67,766–67,966 bp · +
rps18 · MN047312.1 · 68,141–68,446 bp · +
rps12 · MN047312.1 · 137,930–138,172 bp · +
psbB · MN047312.1 · 72,524–74,050 bp · +
psbT · MN047312.1 · 74,242–74,343 bp · +
psbH · MN047312.1 · 74,652–74,873 bp · +
petB · MN047312.1 · 74,998–76,365 bp · +
petD · MN047312.1 · 76,554–77,755 bp · +
ycf2 · MN047312.1 · 86,151–92,960 bp · +
ycf15 · MN047312.1 · 93,051–93,299 bp · +
trnV-GAC · MN047312.1 · 99,545–99,616 bp · +
rrn16 · MN047312.1 · 99,844–101,334 bp · +
trnI-GAU · MN047312.1 · 101,633–102,652 bp · +
trnA-UGC · MN047312.1 · 102,718–103,600 bp · +
rrn23 · MN047312.1 · 103,770–106,582 bp · +
rrn4.5 · MN047312.1 · 106,681–106,783 bp · +
rrn5 · MN047312.1 · 107,031–107,151 bp · +
trnR-ACG · MN047312.1 · 107,386–107,459 bp · +
trnN-GUU · MN047312.1 · 108,006–108,077 bp · +
ycf1 · MN047312.1 · 108,407–109,189 bp · +
rpl32 · MN047312.1 · 111,915–112,091 bp · +
trnL-UAG · MN047312.1 · 112,537–112,616 bp · +
ccsA · MN047312.1 · 112,713–113,687 bp · +
trnN-GUU · MN047312.1 · 127,831–127,902 bp · +
rps7 · MN047312.1 · 138,777–139,244 bp · +
ndhB · MN047312.1 · 139,519–141,730 bp · +
trnL-CAA · MN047312.1 · 142,273–142,353 bp · +
trnI-CAU · MN047312.1 · 149,846–149,919 bp · +
rpl23 · MN047312.1 · 150,079–150,360 bp · +
rpl2 · MN047312.1 · 150,379–151,861 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria indica var. coccinea
ANNOTATED PLASTOME
MN047312.1
151,956 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37989 75978 113967 151956 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1970 3505 1536 Locate
rps16 gene − 5128 6297 1170 Locate
trnQ-UUC gene − 7317 7388 72 Locate
psbK gene + 7713 7898 186 Locate
psbI gene + 8292 8402 111 Locate
trnS-GCU gene − 8521 8608 88 Locate
trnG-CGA gene + 9293 10053 761 Locate
trnR-UCU gene + 10224 10295 72 Locate
atpA gene − 10392 11915 1524 Locate
atpF gene − 11998 13225 1228 Locate
atpH gene − 13582 13827 246 Locate
atpI gene − 14823 15566 744 Locate
rps2 gene − 15915 16625 711 Locate
rpoC2 gene − 16842 21047 4206 Locate
rpoC1 gene − 21202 24031 2830 Locate
rpoB gene − 24058 27270 3213 Locate
trnC-GCA gene + 28429 28499 71 Locate
petN gene + 29211 29300 90 Locate
psbM gene − 30293 30397 105 Locate
trnD-GUC gene − 30924 30997 74 Locate
trnY-GUA gene − 31111 31194 84 Locate
trnE-UUC gene − 31254 31326 73 Locate
trnT-GGU gene + 31799 31870 72 Locate
psbD gene + 33177 34238 1062 Locate
psbC gene + 34186 35607 1422 Locate
trnS-UCA gene − 35842 35934 93 Locate
psbZ gene + 36254 36442 189 Locate
trnG-GCC gene + 36714 36784 71 Locate
trnfM-GAU gene − 36938 37011 74 Locate
rps14 gene − 37161 37463 303 Locate
psaB gene − 37591 39795 2205 Locate
psaA gene − 39821 42073 2253 Locate
ycf3 gene − 42760 44681 1922 Locate
trnS-GGA gene + 45569 45655 87 Locate
rps4 gene − 45941 46546 606 Locate
trnT-UGU gene − 46888 46960 73 Locate
trnL-UAA gene + 47645 48207 563 Locate
trnF-GAA gene + 48513 48585 73 Locate
ndhJ gene − 49234 49710 477 Locate
ndhK gene − 49818 50495 678 Locate
ndhC gene − 50548 50910 363 Locate
trnV-UAC gene − 51766 52418 653 Locate
trnM-CAU gene + 52599 52671 73 Locate
atpE gene − 52887 53288 402 Locate
atpB gene − 53285 54772 1488 Locate
rbcL gene + 55545 56987 1443 Locate
accD gene + 57721 59187 1467 Locate
psaI gene + 59745 59855 111 Locate
ycf4 gene + 60281 60835 555 Locate
cemA gene + 61484 62173 690 Locate
petA gene + 62380 63342 963 Locate
pabJ gene − 64376 64498 123 Locate
psbL gene − 64632 64748 117 Locate
psbF gene − 64772 64891 120 Locate
psbE gene − 64906 65157 252 Locate
petL gene + 66066 66161 96 Locate
petG gene + 66337 66450 114 Locate
trnW-CCA gene − 66569 66642 74 Locate
trnP-UGG gene − 66812 66885 74 Locate
psaJ gene + 67158 67292 135 Locate
rpl33 gene + 67766 67966 201 Locate
rps18 gene + 68141 68446 306 Locate
rpl20 gene − 68683 69069 387 Locate
rps12 gene − 69869 69982 114 Locate
clpP gene − 70125 72057 1933 Locate
psbB gene + 72524 74050 1527 Locate
psbT gene + 74242 74343 102 Locate
psbN gene − 74417 74548 132 Locate
psbH gene + 74652 74873 222 Locate
petB gene + 74998 76365 1368 Locate
petD gene + 76554 77755 1202 Locate
rpoA gene − 77918 78931 1014 Locate
rps11 gene − 79003 79419 417 Locate
rps36 gene − 79521 79634 114 Locate
infA gene − 79730 79963 234 Locate
rps8 gene − 80083 80493 411 Locate
rpl14 gene − 80662 81030 369 Locate
rpl16 gene − 81158 82380 1223 Locate
rps3 gene − 82535 83197 663 Locate
rpl22 gene − 83199 83654 456 Locate
rps19 gene − 83714 83992 279 Locate
rpl2 gene − 84047 85529 1483 Locate
rpl23 gene − 85548 85829 282 Locate
trnI-GAU gene − 85989 86062 74 Locate
ycf2 gene + 86151 92960 6810 Locate
ycf15 gene + 93051 93299 249 Locate
trnL-CAA gene − 93555 93635 81 Locate
ndhB gene − 94178 96389 2212 Locate
rps7 gene − 96664 97131 468 Locate
rps12 gene − 97736 97978 243 Locate
trnV-GAC gene + 99545 99616 72 Locate
rrn16 gene + 99844 101334 1491 Locate
trnI-GAU gene + 101633 102652 1020 Locate
trnA-UGC gene + 102718 103600 883 Locate
rrn23 gene + 103770 106582 2813 Locate
rrn4.5 gene + 106681 106783 103 Locate
rrn5 gene + 107031 107151 121 Locate
trnR-ACG gene + 107386 107459 74 Locate
trnN-GUU gene + 108006 108077 72 Locate
ycf1 gene + 108407 109189 783 Locate
ndhF gene − 109154 111394 2241 Locate
rpl32 gene + 111915 112091 177 Locate
trnL-UAG gene + 112537 112616 80 Locate
ccsA gene + 112713 113687 975 Locate
ndhD gene − 113920 115425 1506 Locate
psaC gene − 115542 115787 246 Locate
ndhE gene − 116044 116349 306 Locate
ndhG gene − 116580 117110 531 Locate
ndhI gene − 117475 117975 501 Locate
ndhA gene − 118056 120151 2096 Locate
ndhH gene − 120153 121334 1182 Locate
rps15 gene − 121437 121709 273 Locate
ycf1 gene − 121976 127501 5526 Locate
trnN-GUU gene + 127831 127902 72 Locate
trnR-ACC gene − 128449 128522 74 Locate
rrn5 gene − 128757 128877 121 Locate
rrn4.5 gene − 129125 129227 103 Locate
rrn23 gene − 129326 132138 2813 Locate
trnA-UGC gene − 132308 133190 883 Locate
trnI-GAU gene − 133256 134275 1020 Locate
rrn16 gene − 134574 136064 1491 Locate
trnV-GAC gene − 136292 136363 72 Locate
rps12 gene + 137930 138172 243 Locate
rps7 gene + 138777 139244 468 Locate
ndhB gene + 139519 141730 2212 Locate
trnL-CAA gene + 142273 142353 81 Locate
ycf15 gene − 142609 142857 249 Locate
ycf2 gene − 142948 149757 6810 Locate
trnI-CAU gene + 149846 149919 74 Locate
rpl23 gene + 150079 150360 282 Locate
rpl2 gene + 150379 151861 1483 Locate
Status Available
Accession MN047312.1
Length 151,956 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources