Coordinate-aware organelle record

Scutellaria indica var. coccinea chloroplast genome

Available MN047312.1 151,956 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	2	76	74
psbA	gene	photosystem-ii	−	374	1433	1059
trnK-UUU	gene	translation-rna	−	1678	4259	2581
matK	gene	other	−	1969	3505	1536
rps16	gene	ribosomal-protein	−	5127	6297	1170
trnQ-UUC	gene	translation-rna	−	7316	7388	72
psbK	gene	photosystem-ii	+	7712	7898	186
psbI	gene	photosystem-ii	+	8291	8402	111
trnS-GCU	gene	translation-rna	−	8520	8608	88
trnG-CGA	gene	translation-rna	+	9292	10053	761
trnR-UCU	gene	translation-rna	+	10223	10295	72
atpA	gene	atp-synthase	−	10391	11915	1524
atpF	gene	atp-synthase	−	11997	13225	1228
atpH	gene	atp-synthase	−	13581	13827	246
atpI	gene	atp-synthase	−	14822	15566	744
rps2	gene	ribosomal-protein	−	15914	16625	711
rpoC2	gene	rna-polymerase	−	16841	21047	4206
rpoC1	gene	rna-polymerase	−	21201	24031	2830
rpoB	gene	rna-polymerase	−	24057	27270	3213
trnC-GCA	gene	translation-rna	+	28428	28499	71
petN	gene	cytochrome	+	29210	29300	90
psbM	gene	photosystem-ii	−	30292	30397	105
trnD-GUC	gene	translation-rna	−	30923	30997	74
trnY-GUA	gene	translation-rna	−	31110	31194	84
trnE-UUC	gene	translation-rna	−	31253	31326	73
trnT-GGU	gene	translation-rna	+	31798	31870	72
psbD	gene	photosystem-ii	+	33176	34238	1062
psbC	gene	photosystem-ii	+	34185	35607	1422
trnS-UCA	gene	translation-rna	−	35841	35934	93
psbZ	gene	photosystem-ii	+	36253	36442	189
trnG-GCC	gene	translation-rna	+	36713	36784	71
trnfM-GAU	gene	translation-rna	−	36937	37011	74
rps14	gene	ribosomal-protein	−	37160	37463	303
psaB	gene	photosystem-i	−	37590	39795	2205
psaA	gene	photosystem-i	−	39820	42073	2253
ycf3	gene	other	−	42759	44681	1922
trnS-GGA	gene	translation-rna	+	45568	45655	87
rps4	gene	ribosomal-protein	−	45940	46546	606
trnT-UGU	gene	translation-rna	−	46887	46960	73
trnL-UAA	gene	translation-rna	+	47644	48207	563
trnF-GAA	gene	translation-rna	+	48512	48585	73
ndhJ	gene	nad-dehydrogenase	−	49233	49710	477
ndhK	gene	nad-dehydrogenase	−	49817	50495	678
ndhC	gene	nad-dehydrogenase	−	50547	50910	363
trnV-UAC	gene	translation-rna	−	51765	52418	653
trnM-CAU	gene	translation-rna	+	52598	52671	73
atpE	gene	atp-synthase	−	52886	53288	402
atpB	gene	atp-synthase	−	53284	54772	1488
rbcL	gene	other	+	55544	56987	1443
accD	gene	other	+	57720	59187	1467
psaI	gene	photosystem-i	+	59744	59855	111
ycf4	gene	other	+	60280	60835	555
cemA	gene	other	+	61483	62173	690
petA	gene	cytochrome	+	62379	63342	963
pabJ	gene	other	−	64375	64498	123
psbL	gene	photosystem-ii	−	64631	64748	117
psbF	gene	photosystem-ii	−	64771	64891	120
psbE	gene	photosystem-ii	−	64905	65157	252
petL	gene	cytochrome	+	66065	66161	96
petG	gene	cytochrome	+	66336	66450	114
trnW-CCA	gene	translation-rna	−	66568	66642	74
trnP-UGG	gene	translation-rna	−	66811	66885	74
psaJ	gene	photosystem-i	+	67157	67292	135
rpl33	gene	ribosomal-protein	+	67765	67966	201
rps18	gene	ribosomal-protein	+	68140	68446	306
rpl20	gene	ribosomal-protein	−	68682	69069	387
rps12	gene	ribosomal-protein	−	69868	97978	28110
rps12	gene	ribosomal-protein	+	69868	138172	68304
clpP	gene	other	−	70124	72057	1933
psbB	gene	photosystem-ii	+	72523	74050	1527
psbT	gene	photosystem-ii	+	74241	74343	102
psbN	gene	photosystem-ii	−	74416	74548	132
psbH	gene	photosystem-ii	+	74651	74873	222
petB	gene	cytochrome	+	74997	76365	1368
petD	gene	cytochrome	+	76553	77755	1202
rpoA	gene	rna-polymerase	−	77917	78931	1014
rps11	gene	ribosomal-protein	−	79002	79419	417
rps36	gene	ribosomal-protein	−	79520	79634	114
infA	gene	other	−	79729	79963	234
rps8	gene	ribosomal-protein	−	80082	80493	411
rpl14	gene	ribosomal-protein	−	80661	81030	369
rpl16	gene	ribosomal-protein	−	81157	82380	1223
rps3	gene	ribosomal-protein	−	82534	83197	663
rpl22	gene	ribosomal-protein	−	83198	83654	456
rps19	gene	ribosomal-protein	−	83713	83992	279
rpl2	gene	ribosomal-protein	−	84046	85529	1483
rpl23	gene	ribosomal-protein	−	85547	85829	282
trnI-GAU	gene	translation-rna	−	85988	86062	74
ycf2	gene	other	+	86150	92960	6810
ycf15	gene	other	+	93050	93299	249
trnL-CAA	gene	translation-rna	−	93554	93635	81
ndhB	gene	nad-dehydrogenase	−	94177	96389	2212
rps7	gene	ribosomal-protein	−	96663	97131	468
trnV-GAC	gene	translation-rna	+	99544	99616	72
rrn16	gene	ribosomal-rna	+	99843	101334	1491
trnI-GAU	gene	translation-rna	+	101632	102652	1020
trnA-UGC	gene	translation-rna	+	102717	103600	883
rrn23	gene	ribosomal-rna	+	103769	106582	2813
rrn4.5	gene	ribosomal-rna	+	106680	106783	103
rrn5	gene	ribosomal-rna	+	107030	107151	121
trnR-ACG	gene	translation-rna	+	107385	107459	74
trnN-GUU	gene	translation-rna	+	108005	108077	72
ycf1	gene	other	+	108406	109189	783
ndhF	gene	nad-dehydrogenase	−	109153	111394	2241
rpl32	gene	ribosomal-protein	+	111914	112091	177
trnL-UAG	gene	translation-rna	+	112536	112616	80
ccsA	gene	other	+	112712	113687	975
ndhD	gene	nad-dehydrogenase	−	113919	115425	1506
psaC	gene	photosystem-i	−	115541	115787	246
ndhE	gene	nad-dehydrogenase	−	116043	116349	306
ndhG	gene	nad-dehydrogenase	−	116579	117110	531
ndhI	gene	nad-dehydrogenase	−	117474	117975	501
ndhA	gene	nad-dehydrogenase	−	118055	120151	2096
ndhH	gene	nad-dehydrogenase	−	120152	121334	1182
rps15	gene	ribosomal-protein	−	121436	121709	273
ycf1	gene	other	−	121975	127501	5526
trnN-GUU	gene	translation-rna	+	127830	127902	72
trnR-ACC	gene	translation-rna	−	128448	128522	74
rrn5	gene	ribosomal-rna	−	128756	128877	121
rrn4.5	gene	ribosomal-rna	−	129124	129227	103
rrn23	gene	ribosomal-rna	−	129325	132138	2813
trnA-UGC	gene	translation-rna	−	132307	133190	883
trnI-GAU	gene	translation-rna	−	133255	134275	1020
rrn16	gene	ribosomal-rna	−	134573	136064	1491
trnV-GAC	gene	translation-rna	−	136291	136363	72
rps7	gene	ribosomal-protein	+	138776	139244	468
ndhB	gene	nad-dehydrogenase	+	139518	141730	2212
trnL-CAA	gene	translation-rna	+	142272	142353	81
ycf15	gene	other	−	142608	142857	249
ycf2	gene	other	−	142947	149757	6810
trnI-CAU	gene	translation-rna	+	149845	149919	74
rpl23	gene	ribosomal-protein	+	150078	150360	282
rpl2	gene	ribosomal-protein	+	150378	151861	1483

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMN047312.1DNA · accDMN047312DNA · atpBMN047312DNA · matKMN047312DNA · ndhFMN047312DNA · psbAMN047312DNA · rbcLMN047312DNA · rps12MN047312DNA · ycf1MN047312