Scutellaria intermedia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130070.1 · 4–77 bp · −
psbA · PZ130070.1 · 384–1,442 bp · −
trnK-UUU · PZ130070.1 · 1,688–4,261 bp · −
matK · PZ130070.1 · 1,974–3,500 bp · −
rps16 · PZ130070.1 · 5,166–6,324 bp · −
trnQ-UUC · PZ130070.1 · 7,069–7,140 bp · −
trnS-GCU · PZ130070.1 · 8,269–8,356 bp · −
atpA · PZ130070.1 · 10,154–11,677 bp · −
atpF · PZ130070.1 · 11,759–12,987 bp · −
atpH · PZ130070.1 · 13,347–13,592 bp · −
atpI · PZ130070.1 · 14,580–15,323 bp · −
rps2 · PZ130070.1 · 15,669–16,379 bp · −
rpoC2 · PZ130070.1 · 16,594–20,799 bp · −
rpoC1 · PZ130070.1 · 20,954–23,790 bp · −
rpoB · PZ130070.1 · 23,817–27,029 bp · −
psbM · PZ130070.1 · 30,056–30,160 bp · −
trnD-GUC · PZ130070.1 · 30,686–30,759 bp · −
trnY-GUA · PZ130070.1 · 30,873–30,956 bp · −
trnE-UUC · PZ130070.1 · 31,016–31,088 bp · −
trnS-UCA · PZ130070.1 · 35,705–35,797 bp · −
trnfM-GAU · PZ130070.1 · 36,798–36,871 bp · −
rps14 · PZ130070.1 · 37,026–37,328 bp · −
psaB · PZ130070.1 · 37,458–39,662 bp · −
psaA · PZ130070.1 · 39,688–41,940 bp · −
ycf3 · PZ130070.1 · 42,650–44,570 bp · −
rps4 · PZ130070.1 · 45,815–46,420 bp · −
trnT-UGU · PZ130070.1 · 46,760–46,832 bp · −
ndhJ · PZ130070.1 · 49,088–49,564 bp · −
ndhK · PZ130070.1 · 49,673–50,350 bp · −
ndhC · PZ130070.1 · 50,404–50,766 bp · −
trnV-UAC · PZ130070.1 · 51,741–52,393 bp · −
atpE · PZ130070.1 · 52,848–53,249 bp · −
atpB · PZ130070.1 · 53,246–54,742 bp · −
pabJ · PZ130070.1 · 64,478–64,600 bp · −
psbL · PZ130070.1 · 64,734–64,850 bp · −
psbF · PZ130070.1 · 64,874–64,993 bp · −
psbE · PZ130070.1 · 65,008–65,259 bp · −
trnW-CCA · PZ130070.1 · 66,640–66,713 bp · −
trnP-UGG · PZ130070.1 · 66,883–66,956 bp · −
rpl20 · PZ130070.1 · 68,753–69,139 bp · −
rps12 · PZ130070.1 · 69,934–70,047 bp · −
rps12 · PZ130070.1 · 97,194–97,987 bp · −
clpP · PZ130070.1 · 70,189–72,117 bp · −
psbN · PZ130070.1 · 74,455–74,586 bp · −
rpoA · PZ130070.1 · 78,149–78,949 bp · −
rps11 · PZ130070.1 · 79,021–79,437 bp · −
rps36 · PZ130070.1 · 79,539–79,652 bp · −
infA · PZ130070.1 · 79,747–79,980 bp · −
rps8 · PZ130070.1 · 80,104–80,514 bp · −
rpl14 · PZ130070.1 · 80,666–81,034 bp · −
rpl16 · PZ130070.1 · 81,161–82,394 bp · −
rps3 · PZ130070.1 · 82,550–83,212 bp · −
rpl22 · PZ130070.1 · 83,214–83,669 bp · −
rps19 · PZ130070.1 · 83,729–84,007 bp · −
rpl2 · PZ130070.1 · 84,062–85,543 bp · −
rpl23 · PZ130070.1 · 85,562–85,843 bp · −
trnI-GAU · PZ130070.1 · 86,003–86,076 bp · −
trnL-CAA · PZ130070.1 · 93,564–93,644 bp · −
ndhB · PZ130070.1 · 94,187–96,398 bp · −
rps7 · PZ130070.1 · 96,673–97,140 bp · −
trnN-GUU · PZ130070.1 · 108,020–108,091 bp · −
ndhF · PZ130070.1 · 109,148–111,409 bp · −
ndhD · PZ130070.1 · 113,770–115,299 bp · −
psaC · PZ130070.1 · 115,400–115,645 bp · −
ndhE · PZ130070.1 · 115,901–116,206 bp · −
ndhG · PZ130070.1 · 116,423–116,953 bp · −
ndhI · PZ130070.1 · 117,324–117,824 bp · −
ndhA · PZ130070.1 · 117,910–120,031 bp · −
ndhH · PZ130070.1 · 120,033–121,214 bp · −
rps15 · PZ130070.1 · 121,311–121,583 bp · −
ycf1 · PZ130070.1 · 121,781–127,306 bp · −
trnR-ACC · PZ130070.1 · 128,256–128,329 bp · −
rrn5 · PZ130070.1 · 128,564–128,684 bp · −
rrn4.5 · PZ130070.1 · 128,932–129,034 bp · −
rrn23 · PZ130070.1 · 129,133–131,944 bp · −
trnA-UGC · PZ130070.1 · 132,114–133,000 bp · −
trnI-GAU · PZ130070.1 · 133,066–134,084 bp · −
rrn16 · PZ130070.1 · 134,383–135,873 bp · −
trnV-GAC · PZ130070.1 · 136,100–136,171 bp · −
ycf15 · PZ130070.1 · 142,423–142,620 bp · −
ycf2 · PZ130070.1 · 142,762–149,562 bp · −
psbK · PZ130070.1 · 7,465–7,650 bp · +
psbI · PZ130070.1 · 8,040–8,150 bp · +
trnG-CGA · PZ130070.1 · 9,055–9,811 bp · +
trnR-UCU · PZ130070.1 · 9,986–10,057 bp · +
trnC-GCA · PZ130070.1 · 28,190–28,260 bp · +
petN · PZ130070.1 · 28,976–29,065 bp · +
trnT-GGU · PZ130070.1 · 31,664–31,736 bp · +
psbD · PZ130070.1 · 33,040–34,101 bp · +
psbC · PZ130070.1 · 34,049–35,470 bp · +
psbZ · PZ130070.1 · 36,113–36,301 bp · +
trnG-GCC · PZ130070.1 · 36,577–36,647 bp · +
trnS-GGA · PZ130070.1 · 45,453–45,539 bp · +
trnL-UAA · PZ130070.1 · 47,504–48,064 bp · +
trnF-GAA · PZ130070.1 · 48,364–48,436 bp · +
trnM-CAU · PZ130070.1 · 52,582–52,654 bp · +
rbcL · PZ130070.1 · 55,514–56,956 bp · +
accD · PZ130070.1 · 57,670–59,148 bp · +
psaI · PZ130070.1 · 59,855–59,965 bp · +
ycf4 · PZ130070.1 · 60,399–60,953 bp · +
cemA · PZ130070.1 · 61,702–62,301 bp · +
petA · PZ130070.1 · 62,508–63,470 bp · +
petL · PZ130070.1 · 66,137–66,232 bp · +
petG · PZ130070.1 · 66,408–66,521 bp · +
psaJ · PZ130070.1 · 67,228–67,362 bp · +
rpl33 · PZ130070.1 · 67,838–68,038 bp · +
rps18 · PZ130070.1 · 68,213–68,518 bp · +
rps12 · PZ130070.1 · 137,740–138,533 bp · +
psbB · PZ130070.1 · 72,569–74,095 bp · +
psbT · PZ130070.1 · 74,287–74,394 bp · +
psbH · PZ130070.1 · 74,690–74,911 bp · +
petB · PZ130070.1 · 75,036–76,405 bp · +
petD · PZ130070.1 · 76,588–77,794 bp · +
ycf2 · PZ130070.1 · 86,165–92,965 bp · +
ycf15 · PZ130070.1 · 93,107–93,304 bp · +
trnV-GAC · PZ130070.1 · 99,556–99,627 bp · +
rrn16 · PZ130070.1 · 99,854–101,344 bp · +
trnI-GAU · PZ130070.1 · 101,643–102,661 bp · +
trnA-UGC · PZ130070.1 · 102,727–103,613 bp · +
rrn23 · PZ130070.1 · 103,783–106,594 bp · +
rrn4.5 · PZ130070.1 · 106,693–106,795 bp · +
rrn5 · PZ130070.1 · 107,043–107,163 bp · +
trnR-ACG · PZ130070.1 · 107,398–107,471 bp · +
ycf1 · PZ130070.1 · 108,421–109,275 bp · +
rpl32 · PZ130070.1 · 111,737–111,913 bp · +
trnL-UAG · PZ130070.1 · 112,357–112,436 bp · +
ccsA · PZ130070.1 · 112,538–113,512 bp · +
trnN-GUU · PZ130070.1 · 127,636–127,707 bp · +
rps7 · PZ130070.1 · 138,587–139,054 bp · +
ndhB · PZ130070.1 · 139,329–141,540 bp · +
trnL-CAA · PZ130070.1 · 142,083–142,163 bp · +
trnI-CAU · PZ130070.1 · 149,651–149,724 bp · +
rpl23 · PZ130070.1 · 149,884–150,165 bp · +
rpl2 · PZ130070.1 · 150,184–151,665 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria intermedia
ANNOTATED PLASTOME
PZ130070.1
151,765 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37941 75882 113824 151765 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 384 1442 1059 Locate
trnK-UUU gene − 1688 4261 2574 Locate
matK gene − 1974 3500 1527 Locate
rps16 gene − 5166 6324 1159 Locate
trnQ-UUC gene − 7069 7140 72 Locate
psbK gene + 7465 7650 186 Locate
psbI gene + 8040 8150 111 Locate
trnS-GCU gene − 8269 8356 88 Locate
trnG-CGA gene + 9055 9811 757 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10154 11677 1524 Locate
atpF gene − 11759 12987 1229 Locate
atpH gene − 13347 13592 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15669 16379 711 Locate
rpoC2 gene − 16594 20799 4206 Locate
rpoC1 gene − 20954 23790 2837 Locate
rpoB gene − 23817 27029 3213 Locate
trnC-GCA gene + 28190 28260 71 Locate
petN gene + 28976 29065 90 Locate
psbM gene − 30056 30160 105 Locate
trnD-GUC gene − 30686 30759 74 Locate
trnY-GUA gene − 30873 30956 84 Locate
trnE-UUC gene − 31016 31088 73 Locate
trnT-GGU gene + 31664 31736 73 Locate
psbD gene + 33040 34101 1062 Locate
psbC gene + 34049 35470 1422 Locate
trnS-UCA gene − 35705 35797 93 Locate
psbZ gene + 36113 36301 189 Locate
trnG-GCC gene + 36577 36647 71 Locate
trnfM-GAU gene − 36798 36871 74 Locate
rps14 gene − 37026 37328 303 Locate
psaB gene − 37458 39662 2205 Locate
psaA gene − 39688 41940 2253 Locate
ycf3 gene − 42650 44570 1921 Locate
trnS-GGA gene + 45453 45539 87 Locate
rps4 gene − 45815 46420 606 Locate
trnT-UGU gene − 46760 46832 73 Locate
trnL-UAA gene + 47504 48064 561 Locate
trnF-GAA gene + 48364 48436 73 Locate
ndhJ gene − 49088 49564 477 Locate
ndhK gene − 49673 50350 678 Locate
ndhC gene − 50404 50766 363 Locate
trnV-UAC gene − 51741 52393 653 Locate
trnM-CAU gene + 52582 52654 73 Locate
atpE gene − 52848 53249 402 Locate
atpB gene − 53246 54742 1497 Locate
rbcL gene + 55514 56956 1443 Locate
accD gene + 57670 59148 1479 Locate
psaI gene + 59855 59965 111 Locate
ycf4 gene + 60399 60953 555 Locate
cemA gene + 61702 62301 600 Locate
petA gene + 62508 63470 963 Locate
pabJ gene − 64478 64600 123 Locate
psbL gene − 64734 64850 117 Locate
psbF gene − 64874 64993 120 Locate
psbE gene − 65008 65259 252 Locate
petL gene + 66137 66232 96 Locate
petG gene + 66408 66521 114 Locate
trnW-CCA gene − 66640 66713 74 Locate
trnP-UGG gene − 66883 66956 74 Locate
psaJ gene + 67228 67362 135 Locate
rpl33 gene + 67838 68038 201 Locate
rps18 gene + 68213 68518 306 Locate
rpl20 gene − 68753 69139 387 Locate
rps12 gene − 69934 70047 114 Locate
clpP gene − 70189 72117 1929 Locate
psbB gene + 72569 74095 1527 Locate
psbT gene + 74287 74394 108 Locate
psbN gene − 74455 74586 132 Locate
psbH gene + 74690 74911 222 Locate
petB gene + 75036 76405 1370 Locate
petD gene + 76588 77794 1207 Locate
rpoA gene − 78149 78949 801 Locate
rps11 gene − 79021 79437 417 Locate
rps36 gene − 79539 79652 114 Locate
infA gene − 79747 79980 234 Locate
rps8 gene − 80104 80514 411 Locate
rpl14 gene − 80666 81034 369 Locate
rpl16 gene − 81161 82394 1234 Locate
rps3 gene − 82550 83212 663 Locate
rpl22 gene − 83214 83669 456 Locate
rps19 gene − 83729 84007 279 Locate
rpl2 gene − 84062 85543 1482 Locate
rpl23 gene − 85562 85843 282 Locate
trnI-GAU gene − 86003 86076 74 Locate
ycf2 gene + 86165 92965 6801 Locate
ycf15 gene + 93107 93304 198 Locate
trnL-CAA gene − 93564 93644 81 Locate
ndhB gene − 94187 96398 2212 Locate
rps7 gene − 96673 97140 468 Locate
rps12 gene − 97194 97987 794 Locate
trnV-GAC gene + 99556 99627 72 Locate
rrn16 gene + 99854 101344 1491 Locate
trnI-GAU gene + 101643 102661 1019 Locate
trnA-UGC gene + 102727 103613 887 Locate
rrn23 gene + 103783 106594 2812 Locate
rrn4.5 gene + 106693 106795 103 Locate
rrn5 gene + 107043 107163 121 Locate
trnR-ACG gene + 107398 107471 74 Locate
trnN-GUU gene − 108020 108091 72 Locate
ycf1 gene + 108421 109275 855 Locate
ndhF gene − 109148 111409 2262 Locate
rpl32 gene + 111737 111913 177 Locate
trnL-UAG gene + 112357 112436 80 Locate
ccsA gene + 112538 113512 975 Locate
ndhD gene − 113770 115299 1530 Locate
psaC gene − 115400 115645 246 Locate
ndhE gene − 115901 116206 306 Locate
ndhG gene − 116423 116953 531 Locate
ndhI gene − 117324 117824 501 Locate
ndhA gene − 117910 120031 2122 Locate
ndhH gene − 120033 121214 1182 Locate
rps15 gene − 121311 121583 273 Locate
ycf1 gene − 121781 127306 5526 Locate
trnN-GUU gene + 127636 127707 72 Locate
trnR-ACC gene − 128256 128329 74 Locate
rrn5 gene − 128564 128684 121 Locate
rrn4.5 gene − 128932 129034 103 Locate
rrn23 gene − 129133 131944 2812 Locate
trnA-UGC gene − 132114 133000 887 Locate
trnI-GAU gene − 133066 134084 1019 Locate
rrn16 gene − 134383 135873 1491 Locate
trnV-GAC gene − 136100 136171 72 Locate
rps12 gene + 137740 138533 794 Locate
rps7 gene + 138587 139054 468 Locate
ndhB gene + 139329 141540 2212 Locate
trnL-CAA gene + 142083 142163 81 Locate
ycf15 gene − 142423 142620 198 Locate
ycf2 gene − 142762 149562 6801 Locate
trnI-CAU gene + 149651 149724 74 Locate
rpl23 gene + 149884 150165 282 Locate
rpl2 gene + 150184 151665 1482 Locate
Status Available
Accession PZ130070.1
Length 151,765 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources