Scutellaria schachristanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130063.1 · 4–77 bp · −
psbA · PZ130063.1 · 374–1,432 bp · −
trnK-UUU · PZ130063.1 · 1,678–4,251 bp · −
matK · PZ130063.1 · 1,964–3,490 bp · −
rps16 · PZ130063.1 · 5,156–6,316 bp · −
trnQ-UUC · PZ130063.1 · 7,062–7,133 bp · −
trnS-GCU · PZ130063.1 · 8,262–8,349 bp · −
atpA · PZ130063.1 · 10,152–11,675 bp · −
atpF · PZ130063.1 · 11,757–12,986 bp · −
atpH · PZ130063.1 · 13,348–13,593 bp · −
atpI · PZ130063.1 · 14,581–15,324 bp · −
rps2 · PZ130063.1 · 15,670–16,380 bp · −
rpoC2 · PZ130063.1 · 16,595–20,800 bp · −
rpoC1 · PZ130063.1 · 20,955–23,791 bp · −
rpoB · PZ130063.1 · 23,818–27,030 bp · −
psbM · PZ130063.1 · 30,132–30,236 bp · −
trnD-GUC · PZ130063.1 · 30,762–30,835 bp · −
trnY-GUA · PZ130063.1 · 30,949–31,032 bp · −
trnE-UUC · PZ130063.1 · 31,092–31,164 bp · −
trnS-UCA · PZ130063.1 · 35,776–35,868 bp · −
trnfM-GAU · PZ130063.1 · 36,861–36,934 bp · −
rps14 · PZ130063.1 · 37,089–37,391 bp · −
psaB · PZ130063.1 · 37,519–39,723 bp · −
psaA · PZ130063.1 · 39,749–42,001 bp · −
ycf3 · PZ130063.1 · 42,694–44,617 bp · −
rps4 · PZ130063.1 · 45,862–46,467 bp · −
trnT-UGU · PZ130063.1 · 46,812–46,884 bp · −
ndhJ · PZ130063.1 · 49,115–49,591 bp · −
ndhK · PZ130063.1 · 49,700–50,377 bp · −
ndhC · PZ130063.1 · 50,431–50,793 bp · −
trnV-UAC · PZ130063.1 · 51,779–52,431 bp · −
atpE · PZ130063.1 · 52,886–53,287 bp · −
atpB · PZ130063.1 · 53,284–54,780 bp · −
pabJ · PZ130063.1 · 64,516–64,638 bp · −
psbL · PZ130063.1 · 64,772–64,888 bp · −
psbF · PZ130063.1 · 64,912–65,031 bp · −
psbE · PZ130063.1 · 65,046–65,297 bp · −
trnW-CCA · PZ130063.1 · 66,677–66,750 bp · −
trnP-UGG · PZ130063.1 · 66,920–66,993 bp · −
rpl20 · PZ130063.1 · 68,794–69,180 bp · −
rps12 · PZ130063.1 · 69,975–70,088 bp · −
rps12 · PZ130063.1 · 97,223–98,016 bp · −
clpP · PZ130063.1 · 70,230–72,158 bp · −
psbN · PZ130063.1 · 74,497–74,628 bp · −
rpoA · PZ130063.1 · 78,190–78,990 bp · −
rps11 · PZ130063.1 · 79,062–79,478 bp · −
rps36 · PZ130063.1 · 79,580–79,693 bp · −
infA · PZ130063.1 · 79,788–80,021 bp · −
rps8 · PZ130063.1 · 80,145–80,555 bp · −
rpl14 · PZ130063.1 · 80,707–81,075 bp · −
rpl16 · PZ130063.1 · 81,202–82,435 bp · −
rps3 · PZ130063.1 · 82,591–83,253 bp · −
rpl22 · PZ130063.1 · 83,255–83,710 bp · −
rps19 · PZ130063.1 · 83,770–84,048 bp · −
rpl2 · PZ130063.1 · 84,103–85,584 bp · −
rpl23 · PZ130063.1 · 85,603–85,884 bp · −
trnI-GAU · PZ130063.1 · 86,044–86,117 bp · −
trnL-CAA · PZ130063.1 · 93,593–93,673 bp · −
ndhB · PZ130063.1 · 94,216–96,427 bp · −
rps7 · PZ130063.1 · 96,702–97,169 bp · −
trnN-GUU · PZ130063.1 · 108,050–108,121 bp · −
ndhF · PZ130063.1 · 109,178–111,439 bp · −
ndhD · PZ130063.1 · 113,798–115,327 bp · −
psaC · PZ130063.1 · 115,428–115,673 bp · −
ndhE · PZ130063.1 · 115,929–116,234 bp · −
ndhG · PZ130063.1 · 116,451–116,981 bp · −
ndhI · PZ130063.1 · 117,348–117,848 bp · −
ndhA · PZ130063.1 · 117,934–120,055 bp · −
ndhH · PZ130063.1 · 120,057–121,238 bp · −
rps15 · PZ130063.1 · 121,335–121,607 bp · −
ycf1 · PZ130063.1 · 121,805–127,324 bp · −
trnR-ACC · PZ130063.1 · 128,274–128,347 bp · −
rrn5 · PZ130063.1 · 128,582–128,702 bp · −
rrn4.5 · PZ130063.1 · 128,950–129,052 bp · −
rrn23 · PZ130063.1 · 129,151–131,962 bp · −
trnA-UGC · PZ130063.1 · 132,132–133,016 bp · −
trnI-GAU · PZ130063.1 · 133,082–134,103 bp · −
rrn16 · PZ130063.1 · 134,402–135,892 bp · −
trnV-GAC · PZ130063.1 · 136,119–136,190 bp · −
ycf15 · PZ130063.1 · 142,442–142,639 bp · −
ycf2 · PZ130063.1 · 142,781–149,569 bp · −
psbK · PZ130063.1 · 7,458–7,643 bp · +
psbI · PZ130063.1 · 8,033–8,143 bp · +
trnG-CGA · PZ130063.1 · 9,053–9,809 bp · +
trnR-UCU · PZ130063.1 · 9,984–10,055 bp · +
trnC-GCA · PZ130063.1 · 28,182–28,252 bp · +
petN · PZ130063.1 · 28,966–29,055 bp · +
trnT-GGU · PZ130063.1 · 31,740–31,812 bp · +
psbD · PZ130063.1 · 33,111–34,172 bp · +
psbC · PZ130063.1 · 34,120–35,541 bp · +
psbZ · PZ130063.1 · 36,184–36,372 bp · +
trnG-GCC · PZ130063.1 · 36,646–36,716 bp · +
trnS-GGA · PZ130063.1 · 45,500–45,586 bp · +
trnL-UAA · PZ130063.1 · 47,543–48,103 bp · +
trnF-GAA · PZ130063.1 · 48,403–48,475 bp · +
trnM-CAU · PZ130063.1 · 52,620–52,692 bp · +
rbcL · PZ130063.1 · 55,552–56,994 bp · +
accD · PZ130063.1 · 57,708–59,186 bp · +
psaI · PZ130063.1 · 59,893–60,003 bp · +
ycf4 · PZ130063.1 · 60,437–60,991 bp · +
cemA · PZ130063.1 · 61,740–62,339 bp · +
petA · PZ130063.1 · 62,546–63,508 bp · +
petL · PZ130063.1 · 66,174–66,269 bp · +
petG · PZ130063.1 · 66,445–66,558 bp · +
psaJ · PZ130063.1 · 67,265–67,399 bp · +
rpl33 · PZ130063.1 · 67,877–68,077 bp · +
rps18 · PZ130063.1 · 68,252–68,557 bp · +
rps12 · PZ130063.1 · 137,759–138,552 bp · +
psbB · PZ130063.1 · 72,610–74,136 bp · +
psbT · PZ130063.1 · 74,329–74,436 bp · +
psbH · PZ130063.1 · 74,732–74,953 bp · +
petB · PZ130063.1 · 75,078–76,446 bp · +
petD · PZ130063.1 · 76,629–77,835 bp · +
ycf2 · PZ130063.1 · 86,206–92,994 bp · +
ycf15 · PZ130063.1 · 93,136–93,333 bp · +
trnV-GAC · PZ130063.1 · 99,585–99,656 bp · +
rrn16 · PZ130063.1 · 99,883–101,373 bp · +
trnI-GAU · PZ130063.1 · 101,672–102,693 bp · +
trnA-UGC · PZ130063.1 · 102,759–103,643 bp · +
rrn23 · PZ130063.1 · 103,813–106,624 bp · +
rrn4.5 · PZ130063.1 · 106,723–106,825 bp · +
rrn5 · PZ130063.1 · 107,073–107,193 bp · +
trnR-ACG · PZ130063.1 · 107,428–107,501 bp · +
ycf1 · PZ130063.1 · 108,451–109,305 bp · +
rpl32 · PZ130063.1 · 111,763–111,939 bp · +
trnL-UAG · PZ130063.1 · 112,386–112,465 bp · +
ccsA · PZ130063.1 · 112,567–113,541 bp · +
trnN-GUU · PZ130063.1 · 127,654–127,725 bp · +
rps7 · PZ130063.1 · 138,606–139,073 bp · +
ndhB · PZ130063.1 · 139,348–141,559 bp · +
trnL-CAA · PZ130063.1 · 142,102–142,182 bp · +
trnI-CAU · PZ130063.1 · 149,658–149,731 bp · +
rpl23 · PZ130063.1 · 149,891–150,172 bp · +
rpl2 · PZ130063.1 · 150,191–151,672 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria schachristanica
ANNOTATED PLASTOME
PZ130063.1
151,772 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37943 75886 113829 151772 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4251 2574 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5156 6316 1161 Locate
trnQ-UUC gene − 7062 7133 72 Locate
psbK gene + 7458 7643 186 Locate
psbI gene + 8033 8143 111 Locate
trnS-GCU gene − 8262 8349 88 Locate
trnG-CGA gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12986 1230 Locate
atpH gene − 13348 13593 246 Locate
atpI gene − 14581 15324 744 Locate
rps2 gene − 15670 16380 711 Locate
rpoC2 gene − 16595 20800 4206 Locate
rpoC1 gene − 20955 23791 2837 Locate
rpoB gene − 23818 27030 3213 Locate
trnC-GCA gene + 28182 28252 71 Locate
petN gene + 28966 29055 90 Locate
psbM gene − 30132 30236 105 Locate
trnD-GUC gene − 30762 30835 74 Locate
trnY-GUA gene − 30949 31032 84 Locate
trnE-UUC gene − 31092 31164 73 Locate
trnT-GGU gene + 31740 31812 73 Locate
psbD gene + 33111 34172 1062 Locate
psbC gene + 34120 35541 1422 Locate
trnS-UCA gene − 35776 35868 93 Locate
psbZ gene + 36184 36372 189 Locate
trnG-GCC gene + 36646 36716 71 Locate
trnfM-GAU gene − 36861 36934 74 Locate
rps14 gene − 37089 37391 303 Locate
psaB gene − 37519 39723 2205 Locate
psaA gene − 39749 42001 2253 Locate
ycf3 gene − 42694 44617 1924 Locate
trnS-GGA gene + 45500 45586 87 Locate
rps4 gene − 45862 46467 606 Locate
trnT-UGU gene − 46812 46884 73 Locate
trnL-UAA gene + 47543 48103 561 Locate
trnF-GAA gene + 48403 48475 73 Locate
ndhJ gene − 49115 49591 477 Locate
ndhK gene − 49700 50377 678 Locate
ndhC gene − 50431 50793 363 Locate
trnV-UAC gene − 51779 52431 653 Locate
trnM-CAU gene + 52620 52692 73 Locate
atpE gene − 52886 53287 402 Locate
atpB gene − 53284 54780 1497 Locate
rbcL gene + 55552 56994 1443 Locate
accD gene + 57708 59186 1479 Locate
psaI gene + 59893 60003 111 Locate
ycf4 gene + 60437 60991 555 Locate
cemA gene + 61740 62339 600 Locate
petA gene + 62546 63508 963 Locate
pabJ gene − 64516 64638 123 Locate
psbL gene − 64772 64888 117 Locate
psbF gene − 64912 65031 120 Locate
psbE gene − 65046 65297 252 Locate
petL gene + 66174 66269 96 Locate
petG gene + 66445 66558 114 Locate
trnW-CCA gene − 66677 66750 74 Locate
trnP-UGG gene − 66920 66993 74 Locate
psaJ gene + 67265 67399 135 Locate
rpl33 gene + 67877 68077 201 Locate
rps18 gene + 68252 68557 306 Locate
rpl20 gene − 68794 69180 387 Locate
rps12 gene − 69975 70088 114 Locate
clpP gene − 70230 72158 1929 Locate
psbB gene + 72610 74136 1527 Locate
psbT gene + 74329 74436 108 Locate
psbN gene − 74497 74628 132 Locate
psbH gene + 74732 74953 222 Locate
petB gene + 75078 76446 1369 Locate
petD gene + 76629 77835 1207 Locate
rpoA gene − 78190 78990 801 Locate
rps11 gene − 79062 79478 417 Locate
rps36 gene − 79580 79693 114 Locate
infA gene − 79788 80021 234 Locate
rps8 gene − 80145 80555 411 Locate
rpl14 gene − 80707 81075 369 Locate
rpl16 gene − 81202 82435 1234 Locate
rps3 gene − 82591 83253 663 Locate
rpl22 gene − 83255 83710 456 Locate
rps19 gene − 83770 84048 279 Locate
rpl2 gene − 84103 85584 1482 Locate
rpl23 gene − 85603 85884 282 Locate
trnI-GAU gene − 86044 86117 74 Locate
ycf2 gene + 86206 92994 6789 Locate
ycf15 gene + 93136 93333 198 Locate
trnL-CAA gene − 93593 93673 81 Locate
ndhB gene − 94216 96427 2212 Locate
rps7 gene − 96702 97169 468 Locate
rps12 gene − 97223 98016 794 Locate
trnV-GAC gene + 99585 99656 72 Locate
rrn16 gene + 99883 101373 1491 Locate
trnI-GAU gene + 101672 102693 1022 Locate
trnA-UGC gene + 102759 103643 885 Locate
rrn23 gene + 103813 106624 2812 Locate
rrn4.5 gene + 106723 106825 103 Locate
rrn5 gene + 107073 107193 121 Locate
trnR-ACG gene + 107428 107501 74 Locate
trnN-GUU gene − 108050 108121 72 Locate
ycf1 gene + 108451 109305 855 Locate
ndhF gene − 109178 111439 2262 Locate
rpl32 gene + 111763 111939 177 Locate
trnL-UAG gene + 112386 112465 80 Locate
ccsA gene + 112567 113541 975 Locate
ndhD gene − 113798 115327 1530 Locate
psaC gene − 115428 115673 246 Locate
ndhE gene − 115929 116234 306 Locate
ndhG gene − 116451 116981 531 Locate
ndhI gene − 117348 117848 501 Locate
ndhA gene − 117934 120055 2122 Locate
ndhH gene − 120057 121238 1182 Locate
rps15 gene − 121335 121607 273 Locate
ycf1 gene − 121805 127324 5520 Locate
trnN-GUU gene + 127654 127725 72 Locate
trnR-ACC gene − 128274 128347 74 Locate
rrn5 gene − 128582 128702 121 Locate
rrn4.5 gene − 128950 129052 103 Locate
rrn23 gene − 129151 131962 2812 Locate
trnA-UGC gene − 132132 133016 885 Locate
trnI-GAU gene − 133082 134103 1022 Locate
rrn16 gene − 134402 135892 1491 Locate
trnV-GAC gene − 136119 136190 72 Locate
rps12 gene + 137759 138552 794 Locate
rps7 gene + 138606 139073 468 Locate
ndhB gene + 139348 141559 2212 Locate
trnL-CAA gene + 142102 142182 81 Locate
ycf15 gene − 142442 142639 198 Locate
ycf2 gene − 142781 149569 6789 Locate
trnI-CAU gene + 149658 149731 74 Locate
rpl23 gene + 149891 150172 282 Locate
rpl2 gene + 150191 151672 1482 Locate
Status Available
Accession PZ130063.1
Length 151,772 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources