Scutellaria scordifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_052883.1 · 3–76 bp · −
psbA · NC_052883.1 · 380–1,438 bp · −
trnK-UUU · NC_052883.1 · 1,675–4,254 bp · −
matK · NC_052883.1 · 1,966–3,501 bp · −
rps16 · NC_052883.1 · 5,163–6,331 bp · −
trnQ-UUC · NC_052883.1 · 7,462–7,533 bp · −
trnS-GCU · NC_052883.1 · 8,655–8,742 bp · −
atpA · NC_052883.1 · 10,532–12,055 bp · −
atpF · NC_052883.1 · 12,129–13,356 bp · −
atpH · NC_052883.1 · 13,724–13,969 bp · −
atpI · NC_052883.1 · 14,966–15,709 bp · −
rps2 · NC_052883.1 · 16,058–16,768 bp · −
rpoC2 · NC_052883.1 · 16,984–21,189 bp · −
rpoC1 · NC_052883.1 · 21,344–24,180 bp · −
rpoB · NC_052883.1 · 24,207–27,419 bp · −
psbM · NC_052883.1 · 30,481–30,585 bp · −
trnD-GUC · NC_052883.1 · 31,111–31,184 bp · −
trnY-GUA · NC_052883.1 · 31,298–31,381 bp · −
trnE-UUC · NC_052883.1 · 31,441–31,513 bp · −
trnS-UCA · NC_052883.1 · 36,137–36,229 bp · −
trnfM-GAU · NC_052883.1 · 37,225–37,298 bp · −
rps14 · NC_052883.1 · 37,448–37,750 bp · −
psaB · NC_052883.1 · 37,878–40,082 bp · −
psaA · NC_052883.1 · 40,108–42,360 bp · −
ycf3 · NC_052883.1 · 43,038–44,960 bp · −
rps4 · NC_052883.1 · 46,220–46,825 bp · −
trnT-UGU · NC_052883.1 · 47,164–47,236 bp · −
ndhJ · NC_052883.1 · 49,518–49,994 bp · −
ndhK · NC_052883.1 · 50,102–50,779 bp · −
ndhC · NC_052883.1 · 50,832–51,194 bp · −
trnV-UAC · NC_052883.1 · 52,191–52,843 bp · −
atpE · NC_052883.1 · 53,306–53,707 bp · −
atpB · NC_052883.1 · 53,704–55,191 bp · −
pabJ · NC_052883.1 · 64,788–64,910 bp · −
psbL · NC_052883.1 · 65,044–65,160 bp · −
psbF · NC_052883.1 · 65,184–65,303 bp · −
psbE · NC_052883.1 · 65,318–65,569 bp · −
trnW-CCA · NC_052883.1 · 66,979–67,052 bp · −
trnP-UGG · NC_052883.1 · 67,222–67,295 bp · −
rpl20 · NC_052883.1 · 69,091–69,477 bp · −
rps12 · NC_052883.1 · 70,277–70,390 bp · −
rps12 · NC_052883.1 · 98,157–98,399 bp · −
clpP · NC_052883.1 · 70,533–72,467 bp · −
psbN · NC_052883.1 · 74,830–74,961 bp · −
rpoA · NC_052883.1 · 78,329–79,342 bp · −
rps11 · NC_052883.1 · 79,414–79,830 bp · −
rps36 · NC_052883.1 · 79,932–80,045 bp · −
infA · NC_052883.1 · 80,141–80,374 bp · −
rps8 · NC_052883.1 · 80,494–80,904 bp · −
rpl14 · NC_052883.1 · 81,063–81,431 bp · −
rpl16 · NC_052883.1 · 81,558–82,801 bp · −
rps3 · NC_052883.1 · 82,956–83,618 bp · −
rpl22 · NC_052883.1 · 83,620–84,075 bp · −
rps19 · NC_052883.1 · 84,135–84,413 bp · −
rpl2 · NC_052883.1 · 84,468–85,950 bp · −
rpl23 · NC_052883.1 · 85,969–86,250 bp · −
trnI-GAU · NC_052883.1 · 86,410–86,483 bp · −
trnL-CAA · NC_052883.1 · 93,976–94,056 bp · −
ndhB · NC_052883.1 · 94,599–96,810 bp · −
rps7 · NC_052883.1 · 97,085–97,552 bp · −
ndhF · NC_052883.1 · 109,578–111,818 bp · −
ndhD · NC_052883.1 · 114,340–115,845 bp · −
psaC · NC_052883.1 · 115,962–116,207 bp · −
ndhE · NC_052883.1 · 116,469–116,774 bp · −
ndhG · NC_052883.1 · 116,995–117,525 bp · −
ndhI · NC_052883.1 · 117,889–118,389 bp · −
ndhA · NC_052883.1 · 118,470–120,569 bp · −
ndhH · NC_052883.1 · 120,571–121,752 bp · −
rps15 · NC_052883.1 · 121,855–122,127 bp · −
ycf1 · NC_052883.1 · 122,398–127,941 bp · −
trnR-ACC · NC_052883.1 · 128,882–128,955 bp · −
rrn5 · NC_052883.1 · 129,190–129,310 bp · −
rrn4.5 · NC_052883.1 · 129,558–129,660 bp · −
rrn23 · NC_052883.1 · 129,759–132,571 bp · −
trnA-UGC · NC_052883.1 · 132,741–133,626 bp · −
trnI-GAU · NC_052883.1 · 133,692–134,711 bp · −
rrn16 · NC_052883.1 · 135,010–136,500 bp · −
trnV-GAC · NC_052883.1 · 136,728–136,799 bp · −
ycf15 · NC_052883.1 · 143,053–143,301 bp · −
ycf2 · NC_052883.1 · 143,392–150,201 bp · −
psbK · NC_052883.1 · 7,858–8,043 bp · +
psbI · NC_052883.1 · 8,435–8,545 bp · +
trnG-CGA · NC_052883.1 · 9,430–10,189 bp · +
trnR-UCU · NC_052883.1 · 10,364–10,435 bp · +
trnC-GCA · NC_052883.1 · 28,583–28,653 bp · +
petN · NC_052883.1 · 29,364–29,453 bp · +
trnT-GGU · NC_052883.1 · 32,096–32,167 bp · +
psbD · NC_052883.1 · 33,464–34,525 bp · +
psbC · NC_052883.1 · 34,473–35,894 bp · +
psbZ · NC_052883.1 · 36,549–36,737 bp · +
trnG-GCC · NC_052883.1 · 37,009–37,079 bp · +
trnS-GGA · NC_052883.1 · 45,848–45,934 bp · +
trnL-UAA · NC_052883.1 · 47,922–48,491 bp · +
trnF-GAA · NC_052883.1 · 48,797–48,869 bp · +
trnM-CAU · NC_052883.1 · 53,024–53,096 bp · +
rbcL · NC_052883.1 · 55,964–57,406 bp · +
rbcL · NC_052883.1 · 55,964–57,410 bp · +
accD · NC_052883.1 · 58,117–59,583 bp · +
psaI · NC_052883.1 · 60,155–60,265 bp · +
ycf4 · NC_052883.1 · 60,699–61,253 bp · +
cemA · NC_052883.1 · 61,913–62,601 bp · +
petA · NC_052883.1 · 62,808–63,770 bp · +
petL · NC_052883.1 · 66,477–66,572 bp · +
petG · NC_052883.1 · 66,747–66,860 bp · +
psaJ · NC_052883.1 · 67,567–67,701 bp · +
rpl33 · NC_052883.1 · 68,173–68,373 bp · +
rps18 · NC_052883.1 · 68,548–68,853 bp · +
rps12 · NC_052883.1 · 138,374–138,616 bp · +
psbB · NC_052883.1 · 72,937–74,463 bp · +
psbT · NC_052883.1 · 74,655–74,756 bp · +
psbH · NC_052883.1 · 75,065–75,286 bp · +
petB · NC_052883.1 · 75,411–76,776 bp · +
petD · NC_052883.1 · 76,965–78,166 bp · +
ycf2 · NC_052883.1 · 86,572–93,381 bp · +
ycf15 · NC_052883.1 · 93,472–93,720 bp · +
trnV-GAC · NC_052883.1 · 99,974–100,045 bp · +
rrn16 · NC_052883.1 · 100,273–101,763 bp · +
trnI-GAU · NC_052883.1 · 102,062–103,081 bp · +
trnA-UGC · NC_052883.1 · 103,147–104,031 bp · +
rrn23 · NC_052883.1 · 104,201–107,013 bp · +
rrn4.5 · NC_052883.1 · 107,112–107,214 bp · +
rrn5 · NC_052883.1 · 107,462–107,582 bp · +
trnR-ACG · NC_052883.1 · 107,817–107,890 bp · +
trnN-GUU · NC_052883.1 · 108,437–108,508 bp · +
ycf1 · NC_052883.1 · 108,831–109,613 bp · +
rpl32 · NC_052883.1 · 112,335–112,511 bp · +
trnL-UAG · NC_052883.1 · 112,957–113,036 bp · +
ccsA · NC_052883.1 · 113,133–114,107 bp · +
trnN-GUU · NC_052883.1 · 128,264–128,335 bp · +
rps7 · NC_052883.1 · 139,221–139,688 bp · +
ndhB · NC_052883.1 · 139,963–142,174 bp · +
trnL-CAA · NC_052883.1 · 142,717–142,797 bp · +
trnI-CAU · NC_052883.1 · 150,290–150,363 bp · +
rpl23 · NC_052883.1 · 150,523–150,804 bp · +
rpl2 · NC_052883.1 · 150,823–152,305 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria scordifolia
ANNOTATED PLASTOME
NC_052883.1
152,366 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38092 76183 114274 152366 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-GAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rps36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-GAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACC rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1675 4254 2580 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUC gene − 7462 7533 72 Locate
psbK gene + 7858 8043 186 Locate
psbI gene + 8435 8545 111 Locate
trnS-GCU gene − 8655 8742 88 Locate
trnG-CGA gene + 9430 10189 760 Locate
trnR-UCU gene + 10364 10435 72 Locate
atpA gene − 10532 12055 1524 Locate
atpF gene − 12129 13356 1228 Locate
atpH gene − 13724 13969 246 Locate
atpI gene − 14966 15709 744 Locate
rps2 gene − 16058 16768 711 Locate
rpoC2 gene − 16984 21189 4206 Locate
rpoC1 gene − 21344 24180 2837 Locate
rpoB gene − 24207 27419 3213 Locate
trnC-GCA gene + 28583 28653 71 Locate
petN gene + 29364 29453 90 Locate
psbM gene − 30481 30585 105 Locate
trnD-GUC gene − 31111 31184 74 Locate
trnY-GUA gene − 31298 31381 84 Locate
trnE-UUC gene − 31441 31513 73 Locate
trnT-GGU gene + 32096 32167 72 Locate
psbD gene + 33464 34525 1062 Locate
psbC gene + 34473 35894 1422 Locate
trnS-UCA gene − 36137 36229 93 Locate
psbZ gene + 36549 36737 189 Locate
trnG-GCC gene + 37009 37079 71 Locate
trnfM-GAU gene − 37225 37298 74 Locate
rps14 gene − 37448 37750 303 Locate
psaB gene − 37878 40082 2205 Locate
psaA gene − 40108 42360 2253 Locate
ycf3 gene − 43038 44960 1923 Locate
trnS-GGA gene + 45848 45934 87 Locate
rps4 gene − 46220 46825 606 Locate
trnT-UGU gene − 47164 47236 73 Locate
trnL-UAA gene + 47922 48491 570 Locate
trnF-GAA gene + 48797 48869 73 Locate
ndhJ gene − 49518 49994 477 Locate
ndhK gene − 50102 50779 678 Locate
ndhC gene − 50832 51194 363 Locate
trnV-UAC gene − 52191 52843 653 Locate
trnM-CAU gene + 53024 53096 73 Locate
atpE gene − 53306 53707 402 Locate
atpB gene − 53704 55191 1488 Locate
rbcL CDS + 55964 57406 1443 Locate
rbcL gene + 55964 57410 1447 Locate
accD gene + 58117 59583 1467 Locate
psaI gene + 60155 60265 111 Locate
ycf4 gene + 60699 61253 555 Locate
cemA gene + 61913 62601 689 Locate
petA gene + 62808 63770 963 Locate
pabJ gene − 64788 64910 123 Locate
psbL gene − 65044 65160 117 Locate
psbF gene − 65184 65303 120 Locate
psbE gene − 65318 65569 252 Locate
petL gene + 66477 66572 96 Locate
petG gene + 66747 66860 114 Locate
trnW-CCA gene − 66979 67052 74 Locate
trnP-UGG gene − 67222 67295 74 Locate
psaJ gene + 67567 67701 135 Locate
rpl33 gene + 68173 68373 201 Locate
rps18 gene + 68548 68853 306 Locate
rpl20 gene − 69091 69477 387 Locate
rps12 gene − 70277 70390 114 Locate
clpP gene − 70533 72467 1935 Locate
psbB gene + 72937 74463 1527 Locate
psbT gene + 74655 74756 102 Locate
psbN gene − 74830 74961 132 Locate
psbH gene + 75065 75286 222 Locate
petB gene + 75411 76776 1366 Locate
petD gene + 76965 78166 1202 Locate
rpoA gene − 78329 79342 1014 Locate
rps11 gene − 79414 79830 417 Locate
rps36 gene − 79932 80045 114 Locate
infA gene − 80141 80374 234 Locate
rps8 gene − 80494 80904 411 Locate
rpl14 gene − 81063 81431 369 Locate
rpl16 gene − 81558 82801 1244 Locate
rps3 gene − 82956 83618 663 Locate
rpl22 gene − 83620 84075 456 Locate
rps19 gene − 84135 84413 279 Locate
rpl2 gene − 84468 85950 1483 Locate
rpl23 gene − 85969 86250 282 Locate
trnI-GAU gene − 86410 86483 74 Locate
ycf2 gene + 86572 93381 6810 Locate
ycf15 gene + 93472 93720 249 Locate
trnL-CAA gene − 93976 94056 81 Locate
ndhB gene − 94599 96810 2212 Locate
rps7 gene − 97085 97552 468 Locate
rps12 gene − 98157 98399 243 Locate
trnV-GAC gene + 99974 100045 72 Locate
rrn16 gene + 100273 101763 1491 Locate
trnI-GAU gene + 102062 103081 1020 Locate
trnA-UGC gene + 103147 104031 885 Locate
rrn23 gene + 104201 107013 2813 Locate
rrn4.5 gene + 107112 107214 103 Locate
rrn5 gene + 107462 107582 121 Locate
trnR-ACG gene + 107817 107890 74 Locate
trnN-GUU gene + 108437 108508 72 Locate
ycf1 gene + 108831 109613 783 Locate
ndhF gene − 109578 111818 2241 Locate
rpl32 gene + 112335 112511 177 Locate
trnL-UAG gene + 112957 113036 80 Locate
ccsA gene + 113133 114107 975 Locate
ndhD gene − 114340 115845 1506 Locate
psaC gene − 115962 116207 246 Locate
ndhE gene − 116469 116774 306 Locate
ndhG gene − 116995 117525 531 Locate
ndhI gene − 117889 118389 501 Locate
ndhA gene − 118470 120569 2100 Locate
ndhH gene − 120571 121752 1182 Locate
rps15 gene − 121855 122127 273 Locate
ycf1 gene − 122398 127941 5544 Locate
trnN-GUU gene + 128264 128335 72 Locate
trnR-ACC gene − 128882 128955 74 Locate
rrn5 gene − 129190 129310 121 Locate
rrn4.5 gene − 129558 129660 103 Locate
rrn23 gene − 129759 132571 2813 Locate
trnA-UGC gene − 132741 133626 886 Locate
trnI-GAU gene − 133692 134711 1020 Locate
rrn16 gene − 135010 136500 1491 Locate
trnV-GAC gene − 136728 136799 72 Locate
rps12 gene + 138374 138616 243 Locate
rps7 gene + 139221 139688 468 Locate
ndhB gene + 139963 142174 2212 Locate
trnL-CAA gene + 142717 142797 81 Locate
ycf15 gene − 143053 143301 249 Locate
ycf2 gene − 143392 150201 6810 Locate
trnI-CAU gene + 150290 150363 74 Locate
rpl23 gene + 150523 150804 282 Locate
rpl2 gene + 150823 152305 1483 Locate
Status Available
Accession NC_052883.1
Length 152,366 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 17 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources