Scutellaria viscidula chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
psbM · MW286272.1 · 138–242 bp · −
trnD-GUC · MW286272.1 · 769–842 bp · −
trnY-GUA · MW286272.1 · 961–1,044 bp · −
trnE-UUC · MW286272.1 · 1,104–1,176 bp · −
trnS-UGA · MW286272.1 · 5,797–5,889 bp · −
trnM-CAU · MW286272.1 · 6,897–6,970 bp · −
rps14 · MW286272.1 · 7,120–7,422 bp · −
psaB · MW286272.1 · 7,551–9,755 bp · −
psaA · MW286272.1 · 9,781–12,033 bp · −
ycf3 · MW286272.1 · 12,722–14,646 bp · −
rps4 · MW286272.1 · 15,908–16,513 bp · −
trnT-UGU · MW286272.1 · 16,852–16,924 bp · −
ndhJ · MW286272.1 · 19,220–19,696 bp · −
ndhK · MW286272.1 · 19,805–20,482 bp · −
ndhC · MW286272.1 · 20,535–20,897 bp · −
atpE · MW286272.1 · 22,963–23,364 bp · −
atpB · MW286272.1 · 23,361–24,857 bp · −
psbJ · MW286272.1 · 34,586–34,708 bp · −
psbL · MW286272.1 · 34,842–34,958 bp · −
psbF · MW286272.1 · 34,982–35,101 bp · −
psbE · MW286272.1 · 35,116–35,367 bp · −
trnW-CCA · MW286272.1 · 36,739–36,812 bp · −
trnP-UGG · MW286272.1 · 36,982–37,055 bp · −
rpl20 · MW286272.1 · 38,850–39,236 bp · −
rps12 · MW286272.1 · 40,035–40,148 bp · −
rps12 · MW286272.1 · 67,895–68,137 bp · −
clpP · MW286272.1 · 40,290–42,230 bp · −
psbN · MW286272.1 · 44,574–44,705 bp · −
rps11 · MW286272.1 · 49,157–49,573 bp · −
rpl36 · MW286272.1 · 49,675–49,788 bp · −
infA · MW286272.1 · 49,883–50,116 bp · −
rps8 · MW286272.1 · 50,240–50,650 bp · −
rpl14 · MW286272.1 · 50,807–51,175 bp · −
rpl16 · MW286272.1 · 51,302–52,534 bp · −
rps3 · MW286272.1 · 52,690–53,352 bp · −
rpl22 · MW286272.1 · 53,354–53,809 bp · −
rps19 · MW286272.1 · 53,869–54,147 bp · −
rpl2 · MW286272.1 · 54,203–55,684 bp · −
rpl23 · MW286272.1 · 55,703–55,984 bp · −
trnM-CAU · MW286272.1 · 56,144–56,217 bp · −
trnL-CAA · MW286272.1 · 63,714–63,794 bp · −
ndhB · MW286272.1 · 64,337–66,548 bp · −
rps7 · MW286272.1 · 66,823–67,290 bp · −
trnN-GUU · MW286272.1 · 78,184–78,255 bp · −
ndhF · MW286272.1 · 79,332–81,572 bp · −
ndhD · MW286272.1 · 83,930–85,459 bp · −
psaC · MW286272.1 · 85,560–85,805 bp · −
ndhE · MW286272.1 · 86,061–86,366 bp · −
ndhG · MW286272.1 · 86,588–87,118 bp · −
ndhI · MW286272.1 · 87,481–87,981 bp · −
ndhA · MW286272.1 · 88,062–90,168 bp · −
ndhH · MW286272.1 · 90,170–91,351 bp · −
rps15 · MW286272.1 · 91,448–91,780 bp · −
ycf1 · MW286272.1 · 91,915–97,449 bp · −
trnR-ACG · MW286272.1 · 98,407–98,480 bp · −
rrn5S · MW286272.1 · 98,705–98,835 bp · −
rrn4.5S · MW286272.1 · 98,962–99,185 bp · −
rrn23S · MW286272.1 · 99,284–102,095 bp · −
trnA-UGC · MW286272.1 · 102,265–103,157 bp · −
trnI · MW286272.1 · 103,222–104,241 bp · −
rrn16S · MW286272.1 · 104,540–106,030 bp · −
trnV-GAC · MW286272.1 · 106,257–106,328 bp · −
ycf15 · MW286272.1 · 112,580–112,777 bp · −
ycf2 · MW286272.1 · 112,919–119,728 bp · −
trnH-GUG · MW286272.1 · 121,944–122,017 bp · −
psbA · MW286272.1 · 122,320–123,378 bp · −
trnK-UUU · MW286272.1 · 123,619–126,193 bp · −
matK · MW286272.1 · 123,909–125,438 bp · −
rps16 · MW286272.1 · 127,088–128,259 bp · −
trnQ-UUG · MW286272.1 · 129,364–129,435 bp · −
trnS-GCU · MW286272.1 · 130,569–130,656 bp · −
atpA · MW286272.1 · 132,380–133,903 bp · −
atpF · MW286272.1 · 133,993–135,221 bp · −
atpH · MW286272.1 · 135,583–135,828 bp · −
atpI · MW286272.1 · 136,803–137,546 bp · −
rps2 · MW286272.1 · 137,891–138,601 bp · −
rpoC2 · MW286272.1 · 138,815–143,020 bp · −
rpoC1 · MW286272.1 · 143,175–146,005 bp · −
rpoB · MW286272.1 · 146,032–149,244 bp · −
trnT-GGU · MW286272.1 · 1,745–1,816 bp · +
psbD · MW286272.1 · 3,133–4,194 bp · +
psbC · MW286272.1 · 4,142–5,563 bp · +
psbZ · MW286272.1 · 6,206–6,394 bp · +
trnG-GCC · MW286272.1 · 6,677–6,747 bp · +
trnS-GGA · MW286272.1 · 15,540–15,626 bp · +
trnL-UAA · MW286272.1 · 17,615–18,189 bp · +
trnF-GAA · MW286272.1 · 18,500–18,572 bp · +
trnM-CAU · MW286272.1 · 22,682–22,754 bp · +
rbcL · MW286272.1 · 25,623–27,065 bp · +
accD · MW286272.1 · 27,781–29,259 bp · +
psaI · MW286272.1 · 29,973–30,083 bp · +
ycf4 · MW286272.1 · 30,517–31,071 bp · +
cemA · MW286272.1 · 31,814–32,413 bp · +
petA · MW286272.1 · 32,615–33,577 bp · +
petL · MW286272.1 · 36,236–36,331 bp · +
petG · MW286272.1 · 36,507–36,620 bp · +
psaJ · MW286272.1 · 37,326–37,460 bp · +
rpl33 · MW286272.1 · 37,936–38,136 bp · +
rps18 · MW286272.1 · 38,311–38,616 bp · +
rps12 · MW286272.1 · 107,897–108,139 bp · +
psbB · MW286272.1 · 42,688–44,214 bp · +
psbT · MW286272.1 · 44,406–44,513 bp · +
psbH · MW286272.1 · 44,809–45,030 bp · +
petB · MW286272.1 · 45,155–46,524 bp · +
petD · MW286272.1 · 46,713–47,909 bp · +
ycf2 · MW286272.1 · 56,306–63,115 bp · +
ycf15 · MW286272.1 · 63,257–63,454 bp · +
trnV-GAC · MW286272.1 · 69,706–69,777 bp · +
rrn16S · MW286272.1 · 70,004–71,494 bp · +
trnI · MW286272.1 · 71,793–72,812 bp · +
trnA-UGC · MW286272.1 · 72,877–73,769 bp · +
rrn23S · MW286272.1 · 73,939–76,750 bp · +
rrn4.5S · MW286272.1 · 76,849–77,072 bp · +
rrn5S · MW286272.1 · 77,199–77,329 bp · +
trnR-ACG · MW286272.1 · 77,554–77,627 bp · +
rpl32 · MW286272.1 · 82,085–82,261 bp · +
trnL-UAG · MW286272.1 · 82,547–82,626 bp · +
ccsA · MW286272.1 · 82,722–83,696 bp · +
trnN-GUU · MW286272.1 · 97,779–97,850 bp · +
rps7 · MW286272.1 · 108,744–109,211 bp · +
ndhB · MW286272.1 · 109,486–111,697 bp · +
trnL-CAA · MW286272.1 · 112,240–112,320 bp · +
trnM-CAU · MW286272.1 · 119,817–119,890 bp · +
rpl23 · MW286272.1 · 120,050–120,331 bp · +
rpl2 · MW286272.1 · 120,350–121,831 bp · +
psbK · MW286272.1 · 129,757–129,942 bp · +
psbI · MW286272.1 · 130,345–130,455 bp · +
trnS-CGA · MW286272.1 · 131,284–132,038 bp · +
trnR-UCU · MW286272.1 · 132,212–132,283 bp · +
trnC-GCA · MW286272.1 · 150,406–150,476 bp · +
petN · MW286272.1 · 150,765–150,854 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria viscidula
ANNOTATED PLASTOME
MW286272.1
151,816 bp · 130 genes
Gene function
Photosystem II
Transfer RNA
Ribosomal protein
Photosystem I
Other
NADH dehydrogenase
ATP synthase
Cytochrome
Ribosomal RNA
RNA polymerase
0 37954 75908 113862 151816 bp
Forward strand 5′ → 3′
trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 psbK psbI trnS-CGA trnR-UCU trnC-GCA petN
psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2 trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
psbM gene − 138 242 105 Locate
trnD-GUC gene − 769 842 74 Locate
trnY-GUA gene − 961 1044 84 Locate
trnE-UUC gene − 1104 1176 73 Locate
trnT-GGU gene + 1745 1816 72 Locate
psbD gene + 3133 4194 1062 Locate
psbC gene + 4142 5563 1422 Locate
trnS-UGA gene − 5797 5889 93 Locate
psbZ gene + 6206 6394 189 Locate
trnG-GCC gene + 6677 6747 71 Locate
trnM-CAU gene − 6897 6970 74 Locate
rps14 gene − 7120 7422 303 Locate
psaB gene − 7551 9755 2205 Locate
psaA gene − 9781 12033 2253 Locate
ycf3 gene − 12722 14646 1925 Locate
trnS-GGA gene + 15540 15626 87 Locate
rps4 gene − 15908 16513 606 Locate
trnT-UGU gene − 16852 16924 73 Locate
trnL-UAA gene + 17615 18189 575 Locate
trnF-GAA gene + 18500 18572 73 Locate
ndhJ gene − 19220 19696 477 Locate
ndhK gene − 19805 20482 678 Locate
ndhC gene − 20535 20897 363 Locate
trnM-CAU gene + 22682 22754 73 Locate
atpE gene − 22963 23364 402 Locate
atpB gene − 23361 24857 1497 Locate
rbcL gene + 25623 27065 1443 Locate
accD gene + 27781 29259 1479 Locate
psaI gene + 29973 30083 111 Locate
ycf4 gene + 30517 31071 555 Locate
cemA gene + 31814 32413 600 Locate
petA gene + 32615 33577 963 Locate
psbJ gene − 34586 34708 123 Locate
psbL gene − 34842 34958 117 Locate
psbF gene − 34982 35101 120 Locate
psbE gene − 35116 35367 252 Locate
petL gene + 36236 36331 96 Locate
petG gene + 36507 36620 114 Locate
trnW-CCA gene − 36739 36812 74 Locate
trnP-UGG gene − 36982 37055 74 Locate
psaJ gene + 37326 37460 135 Locate
rpl33 gene + 37936 38136 201 Locate
rps18 gene + 38311 38616 306 Locate
rpl20 gene − 38850 39236 387 Locate
rps12 gene − 40035 40148 114 Locate
clpP gene − 40290 42230 1941 Locate
psbB gene + 42688 44214 1527 Locate
psbT gene + 44406 44513 108 Locate
psbN gene − 44574 44705 132 Locate
psbH gene + 44809 45030 222 Locate
petB gene + 45155 46524 1370 Locate
petD gene + 46713 47909 1197 Locate
rps11 gene − 49157 49573 417 Locate
rpl36 gene − 49675 49788 114 Locate
infA gene − 49883 50116 234 Locate
rps8 gene − 50240 50650 411 Locate
rpl14 gene − 50807 51175 369 Locate
rpl16 gene − 51302 52534 1233 Locate
rps3 gene − 52690 53352 663 Locate
rpl22 gene − 53354 53809 456 Locate
rps19 gene − 53869 54147 279 Locate
rpl2 gene − 54203 55684 1482 Locate
rpl23 gene − 55703 55984 282 Locate
trnM-CAU gene − 56144 56217 74 Locate
ycf2 gene + 56306 63115 6810 Locate
ycf15 gene + 63257 63454 198 Locate
trnL-CAA gene − 63714 63794 81 Locate
ndhB gene − 64337 66548 2212 Locate
rps7 gene − 66823 67290 468 Locate
rps12 gene − 67895 68137 243 Locate
trnV-GAC gene + 69706 69777 72 Locate
rrn16S gene + 70004 71494 1491 Locate
trnI gene + 71793 72812 1020 Locate
trnA-UGC gene + 72877 73769 893 Locate
rrn23S gene + 73939 76750 2812 Locate
rrn4.5S gene + 76849 77072 224 Locate
rrn5S gene + 77199 77329 131 Locate
trnR-ACG gene + 77554 77627 74 Locate
trnN-GUU gene − 78184 78255 72 Locate
ndhF gene − 79332 81572 2241 Locate
rpl32 gene + 82085 82261 177 Locate
trnL-UAG gene + 82547 82626 80 Locate
ccsA gene + 82722 83696 975 Locate
ndhD gene − 83930 85459 1530 Locate
psaC gene − 85560 85805 246 Locate
ndhE gene − 86061 86366 306 Locate
ndhG gene − 86588 87118 531 Locate
ndhI gene − 87481 87981 501 Locate
ndhA gene − 88062 90168 2107 Locate
ndhH gene − 90170 91351 1182 Locate
rps15 gene − 91448 91780 333 Locate
ycf1 gene − 91915 97449 5535 Locate
trnN-GUU gene + 97779 97850 72 Locate
trnR-ACG gene − 98407 98480 74 Locate
rrn5S gene − 98705 98835 131 Locate
rrn4.5S gene − 98962 99185 224 Locate
rrn23S gene − 99284 102095 2812 Locate
trnA-UGC gene − 102265 103157 893 Locate
trnI gene − 103222 104241 1020 Locate
rrn16S gene − 104540 106030 1491 Locate
trnV-GAC gene − 106257 106328 72 Locate
rps12 gene + 107897 108139 243 Locate
rps7 gene + 108744 109211 468 Locate
ndhB gene + 109486 111697 2212 Locate
trnL-CAA gene + 112240 112320 81 Locate
ycf15 gene − 112580 112777 198 Locate
ycf2 gene − 112919 119728 6810 Locate
trnM-CAU gene + 119817 119890 74 Locate
rpl23 gene + 120050 120331 282 Locate
rpl2 gene + 120350 121831 1482 Locate
trnH-GUG gene − 121944 122017 74 Locate
psbA gene − 122320 123378 1059 Locate
trnK-UUU gene − 123619 126193 2575 Locate
matK gene − 123909 125438 1530 Locate
rps16 gene − 127088 128259 1172 Locate
trnQ-UUG gene − 129364 129435 72 Locate
psbK gene + 129757 129942 186 Locate
psbI gene + 130345 130455 111 Locate
trnS-GCU gene − 130569 130656 88 Locate
trnS-CGA gene + 131284 132038 755 Locate
trnR-UCU gene + 132212 132283 72 Locate
atpA gene − 132380 133903 1524 Locate
atpF gene − 133993 135221 1229 Locate
atpH gene − 135583 135828 246 Locate
atpI gene − 136803 137546 744 Locate
rps2 gene − 137891 138601 711 Locate
rpoC2 gene − 138815 143020 4206 Locate
rpoC1 gene − 143175 146005 2831 Locate
rpoB gene − 146032 149244 3213 Locate
trnC-GCA gene + 150406 150476 71 Locate
petN gene + 150765 150854 90 Locate
Status Available
Accession MW286272.1
Length 151,816 bp
GC content 38.3%
Annotated genes 130
Gene sequence records 8
Photosystem Ii 15 Translation Rna 36 Ribosomal Protein 26 Photosystem I 5 Other 14 Nad Dehydrogenase 12 Atp Synthase 6 Cytochrome 6 Ribosomal Rna 8 Rna Polymerase 3
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources