Vitex agnus-castus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_088534.1 · 9–82 bp · −
psbA · NC_088534.1 · 432–1,490 bp · −
trnK-UUU · NC_088534.1 · 1,722–4,301 bp · −
matK · NC_088534.1 · 2,022–3,551 bp · −
rps16 · NC_088534.1 · 5,205–6,363 bp · −
trnQ-UUG · NC_088534.1 · 7,605–7,676 bp · −
trnS-GCU · NC_088534.1 · 8,817–8,904 bp · −
atpA · NC_088534.1 · 10,729–12,252 bp · −
atpF · NC_088534.1 · 12,333–13,600 bp · −
atpH · NC_088534.1 · 14,000–14,245 bp · −
atpI · NC_088534.1 · 15,280–16,023 bp · −
rps2 · NC_088534.1 · 16,273–16,983 bp · −
rpoC2 · NC_088534.1 · 17,217–21,398 bp · −
rpoC1 · NC_088534.1 · 21,553–24,393 bp · −
rpoB · NC_088534.1 · 24,420–27,608 bp · −
psbM · NC_088534.1 · 30,800–30,904 bp · −
trnD-GUC · NC_088534.1 · 31,432–31,505 bp · −
trnY-GUA · NC_088534.1 · 31,614–31,697 bp · −
trnE-UUC · NC_088534.1 · 31,757–31,829 bp · −
trnS-UGA · NC_088534.1 · 36,395–36,487 bp · −
trnM-CAU · NC_088534.1 · 37,506–37,579 bp · −
rps14 · NC_088534.1 · 37,729–38,031 bp · −
psaB · NC_088534.1 · 38,154–40,358 bp · −
psaA · NC_088534.1 · 40,384–42,636 bp · −
ycf3 · NC_088534.1 · 43,369–45,311 bp · −
rps4 · NC_088534.1 · 46,473–47,078 bp · −
trnT-UGU · NC_088534.1 · 47,443–47,515 bp · −
ndhJ · NC_088534.1 · 49,787–50,263 bp · −
ndhK · NC_088534.1 · 50,370–51,047 bp · −
ndhC · NC_088534.1 · 51,101–51,463 bp · −
atpE · NC_088534.1 · 53,637–54,038 bp · −
atpB · NC_088534.1 · 54,035–55,531 bp · −
psbJ · NC_088534.1 · 65,364–65,486 bp · −
psbL · NC_088534.1 · 65,620–65,736 bp · −
psbF · NC_088534.1 · 65,760–65,879 bp · −
psbE · NC_088534.1 · 65,894–66,145 bp · −
trnW-CCA · NC_088534.1 · 67,581–67,654 bp · −
trnP-UGG · NC_088534.1 · 67,810–67,883 bp · −
rpl20 · NC_088534.1 · 69,700–70,086 bp · −
rps12 · NC_088534.1 · 70,918–71,031 bp · −
rps12 · NC_088534.1 · 99,079–99,321 bp · −
clpP · NC_088534.1 · 71,164–73,149 bp · −
psbN · NC_088534.1 · 75,522–75,653 bp · −
rpoA · NC_088534.1 · 79,073–80,092 bp · −
rps11 · NC_088534.1 · 80,164–80,580 bp · −
rpl36 · NC_088534.1 · 80,682–80,795 bp · −
infA · NC_088534.1 · 80,891–81,124 bp · −
rps8 · NC_088534.1 · 81,249–81,653 bp · −
rpl14 · NC_088534.1 · 81,837–82,205 bp · −
rpl16 · NC_088534.1 · 82,332–82,742 bp · −
rps3 · NC_088534.1 · 83,799–84,461 bp · −
rpl22 · NC_088534.1 · 84,446–84,913 bp · −
rpl2 · NC_088534.1 · 85,307–86,788 bp · −
rpl23 · NC_088534.1 · 86,807–87,088 bp · −
trnM-CAU · NC_088534.1 · 87,254–87,327 bp · −
trnL-CAA · NC_088534.1 · 94,899–94,979 bp · −
ndhB · NC_088534.1 · 95,527–97,738 bp · −
rps7 · NC_088534.1 · 98,002–98,469 bp · −
rrn4.5S · NC_088534.1 · 108,046–108,310 bp · −
trnN-GUU · NC_088534.1 · 109,411–109,482 bp · −
ndhF · NC_088534.1 · 110,859–113,105 bp · −
ndhD · NC_088534.1 · 116,055–117,554 bp · −
psaC · NC_088534.1 · 117,683–117,928 bp · −
ndhE · NC_088534.1 · 118,191–118,496 bp · −
ndhG · NC_088534.1 · 118,710–119,240 bp · −
ndhI · NC_088534.1 · 119,597–120,103 bp · −
ndhA · NC_088534.1 · 120,186–122,361 bp · −
ndhH · NC_088534.1 · 122,363–123,544 bp · −
rps15 · NC_088534.1 · 123,643–123,915 bp · −
ycf1 · NC_088534.1 · 124,336–129,882 bp · −
trnR-ACG · NC_088534.1 · 130,855–130,928 bp · −
rrn5S · NC_088534.1 · 131,162–131,292 bp · −
rrn23S · NC_088534.1 · 131,749–134,559 bp · −
trnA-UGC · NC_088534.1 · 134,728–135,605 bp · −
trnI · NC_088534.1 · 135,670–136,688 bp · −
rrn16S · NC_088534.1 · 136,987–138,477 bp · −
trnV-GAC · NC_088534.1 · 138,705–138,776 bp · −
ycf15 · NC_088534.1 · 145,058–145,255 bp · −
ycf2 · NC_088534.1 · 145,397–152,260 bp · −
psbK · NC_088534.1 · 8,010–8,195 bp · +
psbI · NC_088534.1 · 8,578–8,688 bp · +
trnS-CGA · NC_088534.1 · 9,624–10,373 bp · +
trnR-UCU · NC_088534.1 · 10,554–10,625 bp · +
trnC-GCA · NC_088534.1 · 28,778–28,848 bp · +
petN · NC_088534.1 · 29,705–29,794 bp · +
trnT-GGU · NC_088534.1 · 32,264–32,335 bp · +
psbD · NC_088534.1 · 33,712–34,773 bp · +
psbC · NC_088534.1 · 34,721–36,142 bp · +
psbZ · NC_088534.1 · 36,821–37,009 bp · +
trnG-GCC · NC_088534.1 · 37,279–37,349 bp · +
trnS-GGA · NC_088534.1 · 46,105–46,191 bp · +
trnL-UAA · NC_088534.1 · 48,171–48,740 bp · +
trnF-GAA · NC_088534.1 · 49,046–49,118 bp · +
trnM-CAU · NC_088534.1 · 53,338–53,410 bp · +
rbcL · NC_088534.1 · 56,338–57,780 bp · +
accD · NC_088534.1 · 58,474–59,955 bp · +
psaI · NC_088534.1 · 60,681–60,791 bp · +
ycf4 · NC_088534.1 · 61,232–61,786 bp · +
cemA · NC_088534.1 · 62,449–63,138 bp · +
petA · NC_088534.1 · 63,353–64,315 bp · +
petL · NC_088534.1 · 67,075–67,170 bp · +
petG · NC_088534.1 · 67,345–67,458 bp · +
psaJ · NC_088534.1 · 68,161–68,295 bp · +
rpl33 · NC_088534.1 · 68,770–68,970 bp · +
rps18 · NC_088534.1 · 69,139–69,444 bp · +
rps12 · NC_088534.1 · 140,375–140,617 bp · +
psbB · NC_088534.1 · 73,619–75,145 bp · +
psbT · NC_088534.1 · 75,347–75,454 bp · +
psbH · NC_088534.1 · 75,741–75,980 bp · +
petB · NC_088534.1 · 76,105–77,492 bp · +
petD · NC_088534.1 · 78,387–78,911 bp · +
ycf2 · NC_088534.1 · 87,436–94,299 bp · +
ycf15 · NC_088534.1 · 94,441–94,638 bp · +
trnV-GAC · NC_088534.1 · 100,920–100,991 bp · +
rrn16S · NC_088534.1 · 101,219–102,709 bp · +
trnI · NC_088534.1 · 103,008–104,026 bp · +
trnA-UGC · NC_088534.1 · 104,091–104,968 bp · +
rrn23S · NC_088534.1 · 105,137–107,947 bp · +
rrn5S · NC_088534.1 · 108,404–108,534 bp · +
trnR-ACG · NC_088534.1 · 108,768–108,841 bp · +
ycf1 · NC_088534.1 · 109,814–110,965 bp · +
trnL-UAG · NC_088534.1 · 114,632–114,711 bp · +
ccsA · NC_088534.1 · 114,802–115,788 bp · +
trnN-GUU · NC_088534.1 · 130,214–130,285 bp · +
rrn4.5S · NC_088534.1 · 131,386–131,650 bp · +
rps7 · NC_088534.1 · 141,227–141,694 bp · +
ndhB · NC_088534.1 · 141,958–144,169 bp · +
trnL-CAA · NC_088534.1 · 144,717–144,797 bp · +
trnM-CAU · NC_088534.1 · 152,369–152,442 bp · +
rpl23 · NC_088534.1 · 152,608–152,889 bp · +
rpl2 · NC_088534.1 · 152,908–154,389 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex agnus-castus
ANNOTATED PLASTOME
NC_088534.1
154,495 bp · 130 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38624 77248 115871 154495 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG ycf1 trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 432 1490 1059 Locate
trnK-UUU gene − 1722 4301 2580 Locate
matK gene − 2022 3551 1530 Locate
rps16 gene − 5205 6363 1159 Locate
trnQ-UUG gene − 7605 7676 72 Locate
psbK gene + 8010 8195 186 Locate
psbI gene + 8578 8688 111 Locate
trnS-GCU gene − 8817 8904 88 Locate
trnS-CGA gene + 9624 10373 750 Locate
trnR-UCU gene + 10554 10625 72 Locate
atpA gene − 10729 12252 1524 Locate
atpF gene − 12333 13600 1268 Locate
atpH gene − 14000 14245 246 Locate
atpI gene − 15280 16023 744 Locate
rps2 gene − 16273 16983 711 Locate
rpoC2 gene − 17217 21398 4182 Locate
rpoC1 gene − 21553 24393 2841 Locate
rpoB gene − 24420 27608 3189 Locate
trnC-GCA gene + 28778 28848 71 Locate
petN gene + 29705 29794 90 Locate
psbM gene − 30800 30904 105 Locate
trnD-GUC gene − 31432 31505 74 Locate
trnY-GUA gene − 31614 31697 84 Locate
trnE-UUC gene − 31757 31829 73 Locate
trnT-GGU gene + 32264 32335 72 Locate
psbD gene + 33712 34773 1062 Locate
psbC gene + 34721 36142 1422 Locate
trnS-UGA gene − 36395 36487 93 Locate
psbZ gene + 36821 37009 189 Locate
trnG-GCC gene + 37279 37349 71 Locate
trnM-CAU gene − 37506 37579 74 Locate
rps14 gene − 37729 38031 303 Locate
psaB gene − 38154 40358 2205 Locate
psaA gene − 40384 42636 2253 Locate
ycf3 gene − 43369 45311 1943 Locate
trnS-GGA gene + 46105 46191 87 Locate
rps4 gene − 46473 47078 606 Locate
trnT-UGU gene − 47443 47515 73 Locate
trnL-UAA gene + 48171 48740 570 Locate
trnF-GAA gene + 49046 49118 73 Locate
ndhJ gene − 49787 50263 477 Locate
ndhK gene − 50370 51047 678 Locate
ndhC gene − 51101 51463 363 Locate
trnM-CAU gene + 53338 53410 73 Locate
atpE gene − 53637 54038 402 Locate
atpB gene − 54035 55531 1497 Locate
rbcL gene + 56338 57780 1443 Locate
accD gene + 58474 59955 1482 Locate
psaI gene + 60681 60791 111 Locate
ycf4 gene + 61232 61786 555 Locate
cemA gene + 62449 63138 690 Locate
petA gene + 63353 64315 963 Locate
psbJ gene − 65364 65486 123 Locate
psbL gene − 65620 65736 117 Locate
psbF gene − 65760 65879 120 Locate
psbE gene − 65894 66145 252 Locate
petL gene + 67075 67170 96 Locate
petG gene + 67345 67458 114 Locate
trnW-CCA gene − 67581 67654 74 Locate
trnP-UGG gene − 67810 67883 74 Locate
psaJ gene + 68161 68295 135 Locate
rpl33 gene + 68770 68970 201 Locate
rps18 gene + 69139 69444 306 Locate
rpl20 gene − 69700 70086 387 Locate
rps12 gene − 70918 71031 114 Locate
clpP gene − 71164 73149 1986 Locate
psbB gene + 73619 75145 1527 Locate
psbT gene + 75347 75454 108 Locate
psbN gene − 75522 75653 132 Locate
psbH gene + 75741 75980 240 Locate
petB gene + 76105 77492 1388 Locate
petD gene + 78387 78911 525 Locate
rpoA gene − 79073 80092 1020 Locate
rps11 gene − 80164 80580 417 Locate
rpl36 gene − 80682 80795 114 Locate
infA gene − 80891 81124 234 Locate
rps8 gene − 81249 81653 405 Locate
rpl14 gene − 81837 82205 369 Locate
rpl16 gene − 82332 82742 411 Locate
rps3 gene − 83799 84461 663 Locate
rpl22 gene − 84446 84913 468 Locate
rpl2 gene − 85307 86788 1482 Locate
rpl23 gene − 86807 87088 282 Locate
trnM-CAU gene − 87254 87327 74 Locate
ycf2 gene + 87436 94299 6864 Locate
ycf15 gene + 94441 94638 198 Locate
trnL-CAA gene − 94899 94979 81 Locate
ndhB gene − 95527 97738 2212 Locate
rps7 gene − 98002 98469 468 Locate
rps12 gene − 99079 99321 243 Locate
trnV-GAC gene + 100920 100991 72 Locate
rrn16S gene + 101219 102709 1491 Locate
trnI gene + 103008 104026 1019 Locate
trnA-UGC gene + 104091 104968 878 Locate
rrn23S gene + 105137 107947 2811 Locate
rrn4.5S gene − 108046 108310 265 Locate
rrn5S gene + 108404 108534 131 Locate
trnR-ACG gene + 108768 108841 74 Locate
trnN-GUU gene − 109411 109482 72 Locate
ycf1 gene + 109814 110965 1152 Locate
ndhF gene − 110859 113105 2247 Locate
trnL-UAG gene + 114632 114711 80 Locate
ccsA gene + 114802 115788 987 Locate
ndhD gene − 116055 117554 1500 Locate
psaC gene − 117683 117928 246 Locate
ndhE gene − 118191 118496 306 Locate
ndhG gene − 118710 119240 531 Locate
ndhI gene − 119597 120103 507 Locate
ndhA gene − 120186 122361 2176 Locate
ndhH gene − 122363 123544 1182 Locate
rps15 gene − 123643 123915 273 Locate
ycf1 gene − 124336 129882 5547 Locate
trnN-GUU gene + 130214 130285 72 Locate
trnR-ACG gene − 130855 130928 74 Locate
rrn5S gene − 131162 131292 131 Locate
rrn4.5S gene + 131386 131650 265 Locate
rrn23S gene − 131749 134559 2811 Locate
trnA-UGC gene − 134728 135605 878 Locate
trnI gene − 135670 136688 1019 Locate
rrn16S gene − 136987 138477 1491 Locate
trnV-GAC gene − 138705 138776 72 Locate
rps12 gene + 140375 140617 243 Locate
rps7 gene + 141227 141694 468 Locate
ndhB gene + 141958 144169 2212 Locate
trnL-CAA gene + 144717 144797 81 Locate
ycf15 gene − 145058 145255 198 Locate
ycf2 gene − 145397 152260 6864 Locate
trnM-CAU gene + 152369 152442 74 Locate
rpl23 gene + 152608 152889 282 Locate
rpl2 gene + 152908 154389 1482 Locate
Status Available
Accession NC_088534.1
Length 154,495 bp
GC content 38.3%
Annotated genes 130
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 24 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources