Coordinate-aware organelle record

Vitex agnus-castus chloroplast genome

Available NC_088534.1 154,495 bp 130 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

130 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	8	82	74
psbA	gene	photosystem-ii	−	431	1490	1059
trnK-UUU	gene	translation-rna	−	1721	4301	2580
matK	gene	other	−	2021	3551	1530
rps16	gene	ribosomal-protein	−	5204	6363	1159
trnQ-UUG	gene	translation-rna	−	7604	7676	72
psbK	gene	photosystem-ii	+	8009	8195	186
psbI	gene	photosystem-ii	+	8577	8688	111
trnS-GCU	gene	translation-rna	−	8816	8904	88
trnS-CGA	gene	translation-rna	+	9623	10373	750
trnR-UCU	gene	translation-rna	+	10553	10625	72
atpA	gene	atp-synthase	−	10728	12252	1524
atpF	gene	atp-synthase	−	12332	13600	1268
atpH	gene	atp-synthase	−	13999	14245	246
atpI	gene	atp-synthase	−	15279	16023	744
rps2	gene	ribosomal-protein	−	16272	16983	711
rpoC2	gene	rna-polymerase	−	17216	21398	4182
rpoC1	gene	rna-polymerase	−	21552	24393	2841
rpoB	gene	rna-polymerase	−	24419	27608	3189
trnC-GCA	gene	translation-rna	+	28777	28848	71
petN	gene	cytochrome	+	29704	29794	90
psbM	gene	photosystem-ii	−	30799	30904	105
trnD-GUC	gene	translation-rna	−	31431	31505	74
trnY-GUA	gene	translation-rna	−	31613	31697	84
trnE-UUC	gene	translation-rna	−	31756	31829	73
trnT-GGU	gene	translation-rna	+	32263	32335	72
psbD	gene	photosystem-ii	+	33711	34773	1062
psbC	gene	photosystem-ii	+	34720	36142	1422
trnS-UGA	gene	translation-rna	−	36394	36487	93
psbZ	gene	photosystem-ii	+	36820	37009	189
trnG-GCC	gene	translation-rna	+	37278	37349	71
trnM-CAU	gene	translation-rna	−	37505	37579	74
rps14	gene	ribosomal-protein	−	37728	38031	303
psaB	gene	photosystem-i	−	38153	40358	2205
psaA	gene	photosystem-i	−	40383	42636	2253
ycf3	gene	other	−	43368	45311	1943
trnS-GGA	gene	translation-rna	+	46104	46191	87
rps4	gene	ribosomal-protein	−	46472	47078	606
trnT-UGU	gene	translation-rna	−	47442	47515	73
trnL-UAA	gene	translation-rna	+	48170	48740	570
trnF-GAA	gene	translation-rna	+	49045	49118	73
ndhJ	gene	nad-dehydrogenase	−	49786	50263	477
ndhK	gene	nad-dehydrogenase	−	50369	51047	678
ndhC	gene	nad-dehydrogenase	−	51100	51463	363
trnM-CAU	gene	translation-rna	+	53337	53410	73
atpE	gene	atp-synthase	−	53636	54038	402
atpB	gene	atp-synthase	−	54034	55531	1497
rbcL	gene	other	+	56337	57780	1443
accD	gene	other	+	58473	59955	1482
psaI	gene	photosystem-i	+	60680	60791	111
ycf4	gene	other	+	61231	61786	555
cemA	gene	other	+	62448	63138	690
petA	gene	cytochrome	+	63352	64315	963
psbJ	gene	photosystem-ii	−	65363	65486	123
psbL	gene	photosystem-ii	−	65619	65736	117
psbF	gene	photosystem-ii	−	65759	65879	120
psbE	gene	photosystem-ii	−	65893	66145	252
petL	gene	cytochrome	+	67074	67170	96
petG	gene	cytochrome	+	67344	67458	114
trnW-CCA	gene	translation-rna	−	67580	67654	74
trnP-UGG	gene	translation-rna	−	67809	67883	74
psaJ	gene	photosystem-i	+	68160	68295	135
rpl33	gene	ribosomal-protein	+	68769	68970	201
rps18	gene	ribosomal-protein	+	69138	69444	306
rpl20	gene	ribosomal-protein	−	69699	70086	387
rps12	gene	ribosomal-protein	−	70917	99321	28404
rps12	gene	ribosomal-protein	+	70917	140617	69700
clpP	gene	other	−	71163	73149	1986
psbB	gene	photosystem-ii	+	73618	75145	1527
psbT	gene	photosystem-ii	+	75346	75454	108
psbN	gene	photosystem-ii	−	75521	75653	132
psbH	gene	photosystem-ii	+	75740	75980	240
petB	gene	cytochrome	+	76104	77492	1388
petD	gene	cytochrome	+	78386	78911	525
rpoA	gene	rna-polymerase	−	79072	80092	1020
rps11	gene	ribosomal-protein	−	80163	80580	417
rpl36	gene	ribosomal-protein	−	80681	80795	114
infA	gene	other	−	80890	81124	234
rps8	gene	ribosomal-protein	−	81248	81653	405
rpl14	gene	ribosomal-protein	−	81836	82205	369
rpl16	gene	ribosomal-protein	−	82331	82742	411
rps3	gene	ribosomal-protein	−	83798	84461	663
rpl22	gene	ribosomal-protein	−	84445	84913	468
rpl2	gene	ribosomal-protein	−	85306	86788	1482
rpl23	gene	ribosomal-protein	−	86806	87088	282
trnM-CAU	gene	translation-rna	−	87253	87327	74
ycf2	gene	other	+	87435	94299	6864
ycf15	gene	other	+	94440	94638	198
trnL-CAA	gene	translation-rna	−	94898	94979	81
ndhB	gene	nad-dehydrogenase	−	95526	97738	2212
rps7	gene	ribosomal-protein	−	98001	98469	468
trnV-GAC	gene	translation-rna	+	100919	100991	72
rrn16S	gene	ribosomal-rna	+	101218	102709	1491
trnI	gene	translation-rna	+	103007	104026	1019
trnA-UGC	gene	translation-rna	+	104090	104968	878
rrn23S	gene	ribosomal-rna	+	105136	107947	2811
rrn4.5S	gene	ribosomal-rna	−	108045	108310	265
rrn5S	gene	ribosomal-rna	+	108403	108534	131
trnR-ACG	gene	translation-rna	+	108767	108841	74
trnN-GUU	gene	translation-rna	−	109410	109482	72
ycf1	gene	other	+	109813	110965	1152
ndhF	gene	nad-dehydrogenase	−	110858	113105	2247
trnL-UAG	gene	translation-rna	+	114631	114711	80
ccsA	gene	other	+	114801	115788	987
ndhD	gene	nad-dehydrogenase	−	116054	117554	1500
psaC	gene	photosystem-i	−	117682	117928	246
ndhE	gene	nad-dehydrogenase	−	118190	118496	306
ndhG	gene	nad-dehydrogenase	−	118709	119240	531
ndhI	gene	nad-dehydrogenase	−	119596	120103	507
ndhA	gene	nad-dehydrogenase	−	120185	122361	2176
ndhH	gene	nad-dehydrogenase	−	122362	123544	1182
rps15	gene	ribosomal-protein	−	123642	123915	273
ycf1	gene	other	−	124335	129882	5547
trnN-GUU	gene	translation-rna	+	130213	130285	72
trnR-ACG	gene	translation-rna	−	130854	130928	74
rrn5S	gene	ribosomal-rna	−	131161	131292	131
rrn4.5S	gene	ribosomal-rna	+	131385	131650	265
rrn23S	gene	ribosomal-rna	−	131748	134559	2811
trnA-UGC	gene	translation-rna	−	134727	135605	878
trnI	gene	translation-rna	−	135669	136688	1019
rrn16S	gene	ribosomal-rna	−	136986	138477	1491
trnV-GAC	gene	translation-rna	−	138704	138776	72
rps7	gene	ribosomal-protein	+	141226	141694	468
ndhB	gene	nad-dehydrogenase	+	141957	144169	2212
trnL-CAA	gene	translation-rna	+	144716	144797	81
ycf15	gene	other	−	145057	145255	198
ycf2	gene	other	−	145396	152260	6864
trnM-CAU	gene	translation-rna	+	152368	152442	74
rpl23	gene	ribosomal-protein	+	152607	152889	282
rpl2	gene	ribosomal-protein	+	152907	154389	1482

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_088534.1DNA · accDNC_088534DNA · atpBNC_088534DNA · matKNC_088534DNA · ndhFNC_088534DNA · psbANC_088534DNA · rbcLNC_088534DNA · rps12NC_088534DNA · ycf1NC_088534