Vitex bicolor chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_065871.1 · 9–82 bp · −
psbA · NC_065871.1 · 434–1,492 bp · −
trnK-UUU · NC_065871.1 · 1,724–4,303 bp · −
matK · NC_065871.1 · 2,024–3,553 bp · −
rps16 · NC_065871.1 · 5,116–6,274 bp · −
trnQ-UUG · NC_065871.1 · 7,516–7,587 bp · −
trnS-GCU · NC_065871.1 · 8,728–8,815 bp · −
atpA · NC_065871.1 · 10,641–12,164 bp · −
atpF · NC_065871.1 · 12,245–13,513 bp · −
atpH · NC_065871.1 · 13,913–14,158 bp · −
atpI · NC_065871.1 · 15,194–15,937 bp · −
rps2 · NC_065871.1 · 16,187–16,897 bp · −
rpoC2 · NC_065871.1 · 17,133–21,314 bp · −
rpoC1 · NC_065871.1 · 21,469–24,309 bp · −
rpoB · NC_065871.1 · 24,336–27,524 bp · −
psbM · NC_065871.1 · 30,743–30,847 bp · −
trnD-GUC · NC_065871.1 · 31,374–31,447 bp · −
trnY-GUA · NC_065871.1 · 31,556–31,639 bp · −
trnE-UUC · NC_065871.1 · 31,699–31,771 bp · −
trnS-UGA · NC_065871.1 · 36,325–36,417 bp · −
trnM-CAU · NC_065871.1 · 37,437–37,510 bp · −
rps14 · NC_065871.1 · 37,660–37,962 bp · −
psaB · NC_065871.1 · 38,085–40,289 bp · −
psaA · NC_065871.1 · 40,315–42,567 bp · −
ycf3 · NC_065871.1 · 43,301–45,244 bp · −
rps4 · NC_065871.1 · 46,406–47,011 bp · −
trnT-UGU · NC_065871.1 · 47,380–47,452 bp · −
ndhJ · NC_065871.1 · 49,733–50,209 bp · −
ndhK · NC_065871.1 · 50,316–50,993 bp · −
ndhC · NC_065871.1 · 51,047–51,409 bp · −
atpE · NC_065871.1 · 53,581–53,982 bp · −
atpB · NC_065871.1 · 53,979–55,475 bp · −
psbJ · NC_065871.1 · 65,314–65,436 bp · −
psbL · NC_065871.1 · 65,570–65,686 bp · −
psbF · NC_065871.1 · 65,710–65,829 bp · −
psbE · NC_065871.1 · 65,844–66,095 bp · −
trnW-CCA · NC_065871.1 · 67,539–67,612 bp · −
trnP-UGG · NC_065871.1 · 67,768–67,841 bp · −
rpl20 · NC_065871.1 · 69,665–70,051 bp · −
rps12 · NC_065871.1 · 70,884–70,997 bp · −
rps12 · NC_065871.1 · 99,034–99,276 bp · −
clpP · NC_065871.1 · 71,130–73,112 bp · −
psbN · NC_065871.1 · 75,486–75,617 bp · −
rpoA · NC_065871.1 · 79,027–80,046 bp · −
rps11 · NC_065871.1 · 80,118–80,534 bp · −
rpl36 · NC_065871.1 · 80,636–80,749 bp · −
infA · NC_065871.1 · 80,845–81,078 bp · −
rps8 · NC_065871.1 · 81,203–81,607 bp · −
rpl14 · NC_065871.1 · 81,792–82,160 bp · −
rpl16 · NC_065871.1 · 82,287–82,697 bp · −
rps3 · NC_065871.1 · 83,757–84,419 bp · −
rpl22 · NC_065871.1 · 84,404–84,871 bp · −
rps19 · NC_065871.1 · 84,923–85,201 bp · −
rpl2 · NC_065871.1 · 85,262–86,743 bp · −
rpl23 · NC_065871.1 · 86,762–87,043 bp · −
trnM-CAU · NC_065871.1 · 87,209–87,282 bp · −
trnL-CAA · NC_065871.1 · 94,854–94,934 bp · −
ndhB · NC_065871.1 · 95,482–97,693 bp · −
rps7 · NC_065871.1 · 97,957–98,424 bp · −
rrn4.5S · NC_065871.1 · 108,001–108,265 bp · −
trnN-GUU · NC_065871.1 · 109,366–109,437 bp · −
ndhF · NC_065871.1 · 110,814–113,060 bp · −
ndhD · NC_065871.1 · 116,019–117,518 bp · −
psaC · NC_065871.1 · 117,647–117,892 bp · −
ndhE · NC_065871.1 · 118,155–118,460 bp · −
ndhG · NC_065871.1 · 118,674–119,204 bp · −
ndhI · NC_065871.1 · 119,565–120,071 bp · −
ndhA · NC_065871.1 · 120,154–122,335 bp · −
ndhH · NC_065871.1 · 122,337–123,518 bp · −
rps15 · NC_065871.1 · 123,617–123,889 bp · −
ycf1 · NC_065871.1 · 124,304–129,850 bp · −
trnR-ACG · NC_065871.1 · 130,823–130,896 bp · −
rrn5S · NC_065871.1 · 131,130–131,260 bp · −
rrn23S · NC_065871.1 · 131,717–134,527 bp · −
trnA-UGC · NC_065871.1 · 134,696–135,573 bp · −
trnI · NC_065871.1 · 135,638–136,656 bp · −
rrn16S · NC_065871.1 · 136,955–138,445 bp · −
trnV-GAC · NC_065871.1 · 138,673–138,744 bp · −
ycf15 · NC_065871.1 · 145,026–145,223 bp · −
ycf2 · NC_065871.1 · 145,365–152,228 bp · −
psbK · NC_065871.1 · 7,921–8,106 bp · +
psbI · NC_065871.1 · 8,489–8,599 bp · +
trnS-CGA · NC_065871.1 · 9,536–10,285 bp · +
trnR-UCU · NC_065871.1 · 10,466–10,537 bp · +
trnC-GCA · NC_065871.1 · 28,721–28,791 bp · +
petN · NC_065871.1 · 29,647–29,736 bp · +
trnT-GGU · NC_065871.1 · 32,198–32,269 bp · +
psbD · NC_065871.1 · 33,643–34,704 bp · +
psbC · NC_065871.1 · 34,652–36,073 bp · +
psbZ · NC_065871.1 · 36,751–36,939 bp · +
trnG-GCC · NC_065871.1 · 37,209–37,279 bp · +
trnS-GGA · NC_065871.1 · 46,038–46,124 bp · +
trnL-UAA · NC_065871.1 · 48,116–48,685 bp · +
trnF-GAA · NC_065871.1 · 48,991–49,063 bp · +
trnM-CAU · NC_065871.1 · 53,282–53,354 bp · +
rbcL · NC_065871.1 · 56,282–57,724 bp · +
accD · NC_065871.1 · 58,422–59,903 bp · +
psaI · NC_065871.1 · 60,629–60,739 bp · +
ycf4 · NC_065871.1 · 61,180–61,734 bp · +
cemA · NC_065871.1 · 62,397–63,086 bp · +
petA · NC_065871.1 · 63,301–64,263 bp · +
petL · NC_065871.1 · 67,033–67,128 bp · +
petG · NC_065871.1 · 67,303–67,416 bp · +
psaJ · NC_065871.1 · 68,119–68,253 bp · +
rpl33 · NC_065871.1 · 68,733–68,933 bp · +
rps18 · NC_065871.1 · 69,102–69,407 bp · +
rps12 · NC_065871.1 · 140,343–140,585 bp · +
psbB · NC_065871.1 · 73,582–75,108 bp · +
psbT · NC_065871.1 · 75,311–75,418 bp · +
psbH · NC_065871.1 · 75,705–75,944 bp · +
petB · NC_065871.1 · 76,069–77,454 bp · +
petD · NC_065871.1 · 78,341–78,865 bp · +
ycf2 · NC_065871.1 · 87,391–94,254 bp · +
ycf15 · NC_065871.1 · 94,396–94,593 bp · +
trnV-GAC · NC_065871.1 · 100,875–100,946 bp · +
rrn16S · NC_065871.1 · 101,174–102,664 bp · +
trnI · NC_065871.1 · 102,963–103,981 bp · +
trnA-UGC · NC_065871.1 · 104,046–104,923 bp · +
rrn23S · NC_065871.1 · 105,092–107,902 bp · +
rrn5S · NC_065871.1 · 108,359–108,489 bp · +
trnR-ACG · NC_065871.1 · 108,723–108,796 bp · +
ycf1 · NC_065871.1 · 109,769–110,920 bp · +
trnL-UAG · NC_065871.1 · 114,595–114,674 bp · +
ccsA · NC_065871.1 · 114,765–115,751 bp · +
trnN-GUU · NC_065871.1 · 130,182–130,253 bp · +
rrn4.5S · NC_065871.1 · 131,354–131,618 bp · +
rps7 · NC_065871.1 · 141,195–141,662 bp · +
ndhB · NC_065871.1 · 141,926–144,137 bp · +
trnL-CAA · NC_065871.1 · 144,685–144,765 bp · +
trnM-CAU · NC_065871.1 · 152,337–152,410 bp · +
rpl23 · NC_065871.1 · 152,576–152,857 bp · +
rpl2 · NC_065871.1 · 152,876–154,357 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex bicolor
ANNOTATED PLASTOME
NC_065871.1
154,460 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38615 77230 115845 154460 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI trnA-UGC rrn23S rrn5S trnR-ACG ycf1 trnL-UAG ccsA trnN-GUU rrn4.5S rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 rrn4.5S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn23S trnA-UGC trnI rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 434 1492 1059 Locate
trnK-UUU gene − 1724 4303 2580 Locate
matK gene − 2024 3553 1530 Locate
rps16 gene − 5116 6274 1159 Locate
trnQ-UUG gene − 7516 7587 72 Locate
psbK gene + 7921 8106 186 Locate
psbI gene + 8489 8599 111 Locate
trnS-GCU gene − 8728 8815 88 Locate
trnS-CGA gene + 9536 10285 750 Locate
trnR-UCU gene + 10466 10537 72 Locate
atpA gene − 10641 12164 1524 Locate
atpF gene − 12245 13513 1269 Locate
atpH gene − 13913 14158 246 Locate
atpI gene − 15194 15937 744 Locate
rps2 gene − 16187 16897 711 Locate
rpoC2 gene − 17133 21314 4182 Locate
rpoC1 gene − 21469 24309 2841 Locate
rpoB gene − 24336 27524 3189 Locate
trnC-GCA gene + 28721 28791 71 Locate
petN gene + 29647 29736 90 Locate
psbM gene − 30743 30847 105 Locate
trnD-GUC gene − 31374 31447 74 Locate
trnY-GUA gene − 31556 31639 84 Locate
trnE-UUC gene − 31699 31771 73 Locate
trnT-GGU gene + 32198 32269 72 Locate
psbD gene + 33643 34704 1062 Locate
psbC gene + 34652 36073 1422 Locate
trnS-UGA gene − 36325 36417 93 Locate
psbZ gene + 36751 36939 189 Locate
trnG-GCC gene + 37209 37279 71 Locate
trnM-CAU gene − 37437 37510 74 Locate
rps14 gene − 37660 37962 303 Locate
psaB gene − 38085 40289 2205 Locate
psaA gene − 40315 42567 2253 Locate
ycf3 gene − 43301 45244 1944 Locate
trnS-GGA gene + 46038 46124 87 Locate
rps4 gene − 46406 47011 606 Locate
trnT-UGU gene − 47380 47452 73 Locate
trnL-UAA gene + 48116 48685 570 Locate
trnF-GAA gene + 48991 49063 73 Locate
ndhJ gene − 49733 50209 477 Locate
ndhK gene − 50316 50993 678 Locate
ndhC gene − 51047 51409 363 Locate
trnM-CAU gene + 53282 53354 73 Locate
atpE gene − 53581 53982 402 Locate
atpB gene − 53979 55475 1497 Locate
rbcL gene + 56282 57724 1443 Locate
accD gene + 58422 59903 1482 Locate
psaI gene + 60629 60739 111 Locate
ycf4 gene + 61180 61734 555 Locate
cemA gene + 62397 63086 690 Locate
petA gene + 63301 64263 963 Locate
psbJ gene − 65314 65436 123 Locate
psbL gene − 65570 65686 117 Locate
psbF gene − 65710 65829 120 Locate
psbE gene − 65844 66095 252 Locate
petL gene + 67033 67128 96 Locate
petG gene + 67303 67416 114 Locate
trnW-CCA gene − 67539 67612 74 Locate
trnP-UGG gene − 67768 67841 74 Locate
psaJ gene + 68119 68253 135 Locate
rpl33 gene + 68733 68933 201 Locate
rps18 gene + 69102 69407 306 Locate
rpl20 gene − 69665 70051 387 Locate
rps12 gene − 70884 70997 114 Locate
clpP gene − 71130 73112 1983 Locate
psbB gene + 73582 75108 1527 Locate
psbT gene + 75311 75418 108 Locate
psbN gene − 75486 75617 132 Locate
psbH gene + 75705 75944 240 Locate
petB gene + 76069 77454 1386 Locate
petD gene + 78341 78865 525 Locate
rpoA gene − 79027 80046 1020 Locate
rps11 gene − 80118 80534 417 Locate
rpl36 gene − 80636 80749 114 Locate
infA gene − 80845 81078 234 Locate
rps8 gene − 81203 81607 405 Locate
rpl14 gene − 81792 82160 369 Locate
rpl16 gene − 82287 82697 411 Locate
rps3 gene − 83757 84419 663 Locate
rpl22 gene − 84404 84871 468 Locate
rps19 gene − 84923 85201 279 Locate
rpl2 gene − 85262 86743 1482 Locate
rpl23 gene − 86762 87043 282 Locate
trnM-CAU gene − 87209 87282 74 Locate
ycf2 gene + 87391 94254 6864 Locate
ycf15 gene + 94396 94593 198 Locate
trnL-CAA gene − 94854 94934 81 Locate
ndhB gene − 95482 97693 2212 Locate
rps7 gene − 97957 98424 468 Locate
rps12 gene − 99034 99276 243 Locate
trnV-GAC gene + 100875 100946 72 Locate
rrn16S gene + 101174 102664 1491 Locate
trnI gene + 102963 103981 1019 Locate
trnA-UGC gene + 104046 104923 878 Locate
rrn23S gene + 105092 107902 2811 Locate
rrn4.5S gene − 108001 108265 265 Locate
rrn5S gene + 108359 108489 131 Locate
trnR-ACG gene + 108723 108796 74 Locate
trnN-GUU gene − 109366 109437 72 Locate
ycf1 gene + 109769 110920 1152 Locate
ndhF gene − 110814 113060 2247 Locate
trnL-UAG gene + 114595 114674 80 Locate
ccsA gene + 114765 115751 987 Locate
ndhD gene − 116019 117518 1500 Locate
psaC gene − 117647 117892 246 Locate
ndhE gene − 118155 118460 306 Locate
ndhG gene − 118674 119204 531 Locate
ndhI gene − 119565 120071 507 Locate
ndhA gene − 120154 122335 2182 Locate
ndhH gene − 122337 123518 1182 Locate
rps15 gene − 123617 123889 273 Locate
ycf1 gene − 124304 129850 5547 Locate
trnN-GUU gene + 130182 130253 72 Locate
trnR-ACG gene − 130823 130896 74 Locate
rrn5S gene − 131130 131260 131 Locate
rrn4.5S gene + 131354 131618 265 Locate
rrn23S gene − 131717 134527 2811 Locate
trnA-UGC gene − 134696 135573 878 Locate
trnI gene − 135638 136656 1019 Locate
rrn16S gene − 136955 138445 1491 Locate
trnV-GAC gene − 138673 138744 72 Locate
rps12 gene + 140343 140585 243 Locate
rps7 gene + 141195 141662 468 Locate
ndhB gene + 141926 144137 2212 Locate
trnL-CAA gene + 144685 144765 81 Locate
ycf15 gene − 145026 145223 198 Locate
ycf2 gene − 145365 152228 6864 Locate
trnM-CAU gene + 152337 152410 74 Locate
rpl23 gene + 152576 152857 282 Locate
rpl2 gene + 152876 154357 1482 Locate
Status Available
Accession NC_065871.1
Length 154,460 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources